Wall clock time and date at job start Sat Apr 11 2020 06:59:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09003 * 109.47050 * 2 1
4 4 N 1.46902 * 109.47062 * 240.00336 * 2 1 3
5 5 C 1.46900 * 111.00018 * 85.00125 * 4 2 1
6 6 C 1.50702 * 109.47432 * 180.02562 * 5 4 2
7 7 O 1.21291 * 119.99577 * 359.97438 * 6 5 4
8 8 N 1.34769 * 120.00048 * 180.02562 * 6 5 4
9 9 C 1.37101 * 120.00058 * 179.97438 * 8 6 5
10 10 H 1.08002 * 119.99666 * 0.02562 * 9 8 6
11 11 C 1.38950 * 120.00203 * 179.97438 * 9 8 6
12 12 N 1.31409 * 120.00033 * 0.02562 * 11 9 8
13 13 Si 1.86802 * 119.99973 * 180.02562 * 11 9 8
14 14 H 1.48498 * 109.46951 * 89.99794 * 13 11 9
15 15 H 1.48496 * 109.47048 * 210.00147 * 13 11 9
16 16 H 1.48507 * 109.46959 * 330.00050 * 13 11 9
17 17 C 1.52995 * 109.47095 * 120.00354 * 2 1 3
18 18 H 1.09007 * 109.47080 * 184.99449 * 17 2 1
19 19 C 1.53000 * 109.47023 * 65.00125 * 17 2 1
20 20 N 1.46499 * 109.47455 * 305.00045 * 17 2 1
21 21 C 1.34777 * 120.00199 * 205.00257 * 20 17 2
22 22 O 1.21283 * 119.99750 * 359.97438 * 21 20 17
23 23 C 1.50702 * 119.99928 * 180.27479 * 21 20 17
24 24 C 1.52996 * 109.47159 * 179.72352 * 23 21 20
25 25 O 1.42970 * 109.46899 * 295.00180 * 24 23 21
26 26 C 1.43097 * 113.76701 * 181.20866 * 25 24 23
27 27 C 1.53259 * 108.94532 * 57.96615 * 26 25 24
28 28 C 1.53257 * 108.84172 * 305.47454 * 27 26 25
29 29 O 1.42960 * 109.47240 * 175.00030 * 24 23 21
30 30 H 1.09005 * 109.47027 * 59.99153 * 1 2 3
31 31 H 1.08994 * 109.47452 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.47135 * 299.99537 * 1 2 3
33 33 H 1.00893 * 111.00264 * 208.94969 * 4 2 1
34 34 H 1.09007 * 109.47063 * 300.00102 * 5 4 2
35 35 H 1.09005 * 109.47247 * 59.99711 * 5 4 2
36 36 H 0.96999 * 120.00488 * 359.97438 * 8 6 5
37 37 H 0.97003 * 120.00241 * 179.97438 * 12 11 9
38 38 H 1.09005 * 109.47473 * 179.97438 * 19 17 2
39 39 H 1.08998 * 109.46925 * 299.99562 * 19 17 2
40 40 H 1.08998 * 109.47598 * 59.99967 * 19 17 2
41 41 H 0.97000 * 119.99484 * 24.99354 * 20 17 2
42 42 H 1.09004 * 109.46965 * 299.72211 * 23 21 20
43 43 H 1.08994 * 109.46990 * 59.72065 * 23 21 20
44 44 H 1.09000 * 109.47017 * 54.99395 * 24 23 21
45 45 H 1.09000 * 109.55867 * 298.12281 * 26 25 24
46 46 H 1.09005 * 109.55314 * 177.80355 * 26 25 24
47 47 H 1.08994 * 109.57457 * 185.66822 * 27 26 25
48 48 H 1.09002 * 109.68210 * 65.34660 * 27 26 25
49 49 H 1.08999 * 109.56380 * 294.68159 * 28 27 26
50 50 H 1.09003 * 109.64659 * 174.41752 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0196 -0.6924 -1.1995
5 6 2.0824 0.2227 -2.3469
6 6 2.5873 -0.5216 -3.5561
7 8 2.8677 -1.6985 -3.4704
8 7 2.7282 0.1208 -4.7325
9 6 3.1880 -0.5562 -5.8325
10 1 3.4369 -1.6044 -5.7563
11 6 3.3328 0.1060 -7.0454
12 7 3.0295 1.3812 -7.1382
13 14 3.9585 -0.8167 -8.5443
14 1 2.8092 -1.3988 -9.2827
15 1 4.6934 0.1205 -9.4313
16 1 4.8706 -1.9053 -8.1103
17 6 2.0399 -0.7213 1.2492
18 1 3.1263 -0.6445 1.2950
19 6 1.6352 -2.1955 1.1877
20 7 1.4558 -0.1038 2.4424
21 6 2.0913 -0.1940 3.6275
22 8 3.1464 -0.7868 3.7062
23 6 1.4873 0.4359 4.8562
24 6 2.3985 0.1836 6.0590
25 8 2.4445 -1.2182 6.3363
26 6 3.2536 -1.5562 7.4671
27 6 2.7205 -0.8168 8.6991
28 6 2.6578 0.6825 8.3880
29 8 1.8865 0.8783 7.1987
30 1 -0.3633 0.5140 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 2.9172 -1.1204 -1.0289
34 1 1.0870 0.6165 -2.5525
35 1 2.7588 1.0464 -2.1182
36 1 2.5043 1.0621 -4.8010
37 1 3.1309 1.8436 -7.9849
38 1 1.9989 -2.7096 2.0775
39 1 0.5489 -2.2724 1.1419
40 1 2.0698 -2.6550 0.3000
41 1 0.6118 0.3700 2.3793
42 1 1.3814 1.5094 4.6994
43 1 0.5072 -0.0022 5.0446
44 1 3.4030 0.5428 5.8354
45 1 4.2850 -1.2574 7.2801
46 1 3.2090 -2.6316 7.6392
47 1 3.3877 -0.9869 9.5441
48 1 1.7225 -1.1813 8.9427
49 1 3.6667 1.0662 8.2360
50 1 2.1883 1.2098 9.2184
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733966381.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:17
Heat of formation + Delta-G solvation = -194.851332 kcal
Electronic energy + Delta-G solvation = -30001.988162 eV
Core-core repulsion = 25642.006031 eV
Total energy + Delta-G solvation = -4359.982130 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 343.199 amu
Computer time = 6.07 seconds
Orbital eigenvalues (eV)
-41.38751 -40.60466 -40.10961 -38.50444 -36.69019 -36.04798 -35.29735 -34.23323
-33.27451 -32.38396 -30.88749 -29.93442 -28.12433 -26.94391 -26.16647 -25.50069
-24.12617 -22.15871 -21.50404 -21.11594 -20.72514 -19.92223 -18.88026 -18.12426
-17.78017 -17.48949 -17.13918 -17.03036 -16.70447 -16.46767 -16.11914 -15.91983
-15.77996 -15.72088 -15.59751 -15.23069 -14.74909 -14.35990 -14.30529 -14.24642
-13.89080 -13.77596 -13.52067 -13.41523 -13.13696 -13.05066 -12.95314 -12.83052
-12.50237 -12.43386 -12.40659 -12.12700 -12.12056 -12.09305 -11.90910 -11.65009
-11.50012 -11.03584 -10.92918 -10.69146 -10.34491 -10.11067 -10.00687 -9.36023
-8.46235 -5.94785 1.38372 1.42166 1.54703 1.63378 1.87329 2.06441
2.29901 2.64522 2.70735 3.01997 3.21214 3.50032 3.64214 3.69161
3.77525 3.77891 3.85224 3.96376 4.11514 4.20999 4.24382 4.32125
4.39665 4.42808 4.47440 4.49200 4.51989 4.60298 4.67420 4.70915
4.82043 4.83260 4.85220 4.86849 5.01040 5.06254 5.09796 5.30121
5.41572 5.49699 5.53244 5.82465 5.89605 6.10472 6.13895 6.34445
6.54475 6.60974 7.13441 7.25886 7.57178 8.12775 8.71068
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.032303 B = 0.001571 C = 0.001556
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 866.587300 B =17816.098506 C =17993.378165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.082 3.918
3 H 0.061 0.939
4 N -0.669 5.669
5 C 0.066 3.934
6 C 0.437 3.563
7 O -0.623 6.623
8 N -0.573 5.573
9 C -0.335 4.335
10 H 0.078 0.922
11 C -0.012 4.012
12 N -0.919 5.919
13 Si 0.992 3.008
14 H -0.271 1.271
15 H -0.270 1.270
16 H -0.274 1.274
17 C 0.151 3.849
18 H 0.065 0.935
19 C -0.149 4.149
20 N -0.708 5.708
21 C 0.518 3.482
22 O -0.574 6.574
23 C -0.121 4.121
24 C 0.261 3.739
25 O -0.405 6.405
26 C 0.047 3.953
27 C -0.185 4.185
28 C 0.049 3.951
29 O -0.405 6.405
30 H 0.057 0.943
31 H 0.060 0.940
32 H 0.084 0.916
33 H 0.342 0.658
34 H 0.108 0.892
35 H 0.066 0.934
36 H 0.397 0.603
37 H 0.277 0.723
38 H 0.040 0.960
39 H 0.071 0.929
40 H 0.061 0.939
41 H 0.416 0.584
42 H 0.146 0.854
43 H 0.126 0.874
44 H 0.052 0.948
45 H 0.053 0.947
46 H 0.105 0.895
47 H 0.109 0.891
48 H 0.078 0.922
49 H 0.061 0.939
50 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.973 4.613 31.425 32.318
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.028 4.028
3 H 0.079 0.921
4 N -0.303 5.303
5 C -0.066 4.066
6 C 0.225 3.775
7 O -0.509 6.509
8 N -0.210 5.210
9 C -0.465 4.465
10 H 0.096 0.904
11 C -0.211 4.211
12 N -0.560 5.560
13 Si 0.816 3.184
14 H -0.196 1.196
15 H -0.195 1.195
16 H -0.199 1.199
17 C 0.045 3.955
18 H 0.083 0.917
19 C -0.208 4.208
20 N -0.363 5.363
21 C 0.305 3.695
22 O -0.453 6.453
23 C -0.161 4.161
24 C 0.165 3.835
25 O -0.326 6.326
26 C -0.029 4.029
27 C -0.223 4.223
28 C -0.027 4.027
29 O -0.326 6.326
30 H 0.076 0.924
31 H 0.079 0.921
32 H 0.103 0.897
33 H 0.162 0.838
34 H 0.126 0.874
35 H 0.083 0.917
36 H 0.231 0.769
37 H 0.087 0.913
38 H 0.059 0.941
39 H 0.090 0.910
40 H 0.080 0.920
41 H 0.256 0.744
42 H 0.164 0.836
43 H 0.144 0.856
44 H 0.070 0.930
45 H 0.071 0.929
46 H 0.123 0.877
47 H 0.127 0.873
48 H 0.096 0.904
49 H 0.079 0.921
50 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -5.912 3.291 31.080 31.808
hybrid contribution 1.215 0.586 -0.691 1.516
sum -4.697 3.877 30.389 30.993
Atomic orbital electron populations
1.21903 0.92760 1.02868 1.02509 1.21769 0.97640 0.95933 0.87437
0.92149 1.60223 1.34587 1.32164 1.03313 1.21587 1.02462 0.93578
0.88964 1.20891 0.83181 0.87989 0.85446 1.90499 1.56588 1.18265
1.85594 1.41918 1.58327 1.12565 1.08219 1.19669 1.42195 0.95953
0.88648 0.90406 1.26012 0.97226 0.96612 1.01300 1.69666 1.48637
1.09612 1.28102 0.84940 0.78416 0.77811 0.77237 1.19629 1.19514
1.19921 1.20802 0.97600 0.93096 0.83956 0.91681 1.22020 1.02524
0.95090 1.01129 1.45916 1.26434 1.56855 1.07050 1.20672 0.84347
0.79384 0.85066 1.90733 1.24652 1.43945 1.85974 1.21489 1.00892
1.05179 0.88521 1.22865 0.96157 0.78327 0.86128 1.88140 1.70548
1.24699 1.49236 1.22834 0.93651 1.01513 0.84945 1.22760 1.03932
0.96381 0.99237 1.22920 0.96540 0.95984 0.87256 1.88020 1.55059
1.70021 1.19533 0.92388 0.92096 0.89705 0.83833 0.87415 0.91650
0.76942 0.91308 0.94079 0.90990 0.91958 0.74426 0.83614 0.85608
0.93042 0.92881 0.87721 0.87264 0.90351 0.92075 0.86128
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.46 8.93 71.98 0.64 -1.82 16
2 C 0.08 1.75 2.66 44.91 0.12 1.87 16
3 H 0.06 1.18 7.80 -2.39 -0.02 1.16 16
4 N -0.67 -20.27 5.14 -495.56 -2.54 -22.81 16
5 C 0.07 2.20 5.96 85.56 0.51 2.71 16
6 C 0.44 20.72 7.82 87.66 0.69 21.41 16
7 O -0.62 -34.67 15.78 -3.06 -0.05 -34.72 16
8 N -0.57 -29.35 5.29 -306.99 -1.62 -30.97 16
9 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16
10 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16
11 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16
12 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16
13 Si 0.99 43.14 29.55 68.60 2.03 45.17 16
14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16
15 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16
16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16
17 C 0.15 3.33 2.30 44.99 0.10 3.43 16
18 H 0.06 1.75 7.58 -2.38 -0.02 1.73 16
19 C -0.15 -3.66 9.02 71.98 0.65 -3.01 16
20 N -0.71 -11.68 4.99 -442.53 -2.21 -13.89 16
21 C 0.52 10.65 7.67 87.66 0.67 11.32 16
22 O -0.57 -17.36 15.08 10.74 0.16 -17.19 16
23 C -0.12 -1.70 5.78 29.85 0.17 -1.53 16
24 C 0.26 4.86 2.80 71.98 0.20 5.06 16
25 O -0.41 -9.07 9.77 -120.75 -1.18 -10.25 16
26 C 0.05 0.73 6.96 72.07 0.50 1.23 16
27 C -0.19 -1.90 6.35 30.77 0.20 -1.71 16
28 C 0.05 0.53 6.96 72.07 0.50 1.03 16
29 O -0.41 -6.69 10.54 -126.22 -1.33 -8.02 16
30 H 0.06 1.07 7.45 -2.38 -0.02 1.05 16
31 H 0.06 1.19 6.57 -2.39 -0.02 1.18 16
32 H 0.08 0.86 6.29 -2.39 -0.02 0.84 16
33 H 0.34 11.43 7.62 -89.70 -0.68 10.75 16
34 H 0.11 3.16 7.44 -2.38 -0.02 3.14 16
35 H 0.07 1.91 8.06 -2.38 -0.02 1.89 16
36 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16
37 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16
38 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16
39 H 0.07 1.57 6.57 -2.39 -0.02 1.55 16
40 H 0.06 1.76 7.17 -2.39 -0.02 1.75 16
41 H 0.42 4.02 6.58 -92.71 -0.61 3.41 16
42 H 0.15 1.13 8.14 -2.38 -0.02 1.11 16
43 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16
44 H 0.05 1.06 7.96 -2.39 -0.02 1.04 16
45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16
46 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16
47 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16
48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16
49 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16
50 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16
Total: -1.00 -77.11 402.61 -1.27 -78.38
By element:
Atomic # 1 Polarization: 43.03 SS G_CDS: -1.04 Total: 41.98 kcal
Atomic # 6 Polarization: 15.29 SS G_CDS: 6.24 Total: 21.53 kcal
Atomic # 7 Polarization: -110.78 SS G_CDS: -6.09 Total: -116.87 kcal
Atomic # 8 Polarization: -67.79 SS G_CDS: -2.40 Total: -70.18 kcal
Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal
Total: -77.11 -1.27 -78.38 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733966381.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -116.475 kcal
(2) G-P(sol) polarization free energy of solvation -77.107 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) -194.851 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 6.07 seconds