Wall clock time and date at job start Sat Apr 11 2020 07:00:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86801 * 119.99614 * 2 1
4 4 H 1.48506 * 109.47105 * 239.99969 * 3 2 1
5 5 H 1.48494 * 109.47441 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.46681 * 120.00410 * 3 2 1
7 7 C 1.37871 * 119.99846 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99569 * 179.97438 * 7 2 1
9 9 C 1.50694 * 120.00327 * 359.97438 * 7 2 1
10 10 N 1.46902 * 109.47383 * 185.06734 * 9 7 2
11 11 C 1.46906 * 110.99805 * 295.05586 * 10 9 7
12 12 C 1.53233 * 109.33974 * 187.25386 * 11 10 9
13 13 N 1.47083 * 108.52182 * 306.16622 * 12 11 10
14 14 C 1.34773 * 120.88203 * 231.18773 * 13 12 11
15 15 O 1.21588 * 120.00206 * 354.98187 * 14 13 12
16 16 N 1.34780 * 119.99717 * 174.98168 * 14 13 12
17 17 C 1.46495 * 119.99903 * 185.10158 * 16 14 13
18 18 C 1.53007 * 115.55093 * 270.03976 * 17 16 14
19 19 C 1.50693 * 109.47049 * 304.77632 * 18 17 16
20 20 C 1.38243 * 120.00175 * 275.09415 * 19 18 17
21 21 C 1.38228 * 119.99951 * 179.78881 * 20 19 18
22 22 C 1.38231 * 120.00194 * 0.44401 * 21 20 19
23 23 C 1.38233 * 120.00084 * 359.81088 * 22 21 20
24 24 C 1.38231 * 119.99989 * 359.97438 * 23 22 21
25 25 C 1.53002 * 117.50137 * 124.33204 * 17 16 14
26 26 C 1.53001 * 60.00189 * 252.50927 * 25 17 16
27 27 C 1.47083 * 118.23066 * 51.46014 * 13 12 11
28 28 C 1.46896 * 111.00047 * 59.35391 * 10 9 7
29 29 H 0.97003 * 120.00406 * 0.02562 * 1 2 3
30 30 H 1.09000 * 109.47130 * 65.06517 * 9 7 2
31 31 H 1.09002 * 109.47410 * 305.06760 * 9 7 2
32 32 H 1.08998 * 109.49032 * 67.28959 * 11 10 9
33 33 H 1.09004 * 109.49091 * 307.21360 * 11 10 9
34 34 H 1.08997 * 109.62956 * 186.45933 * 12 11 10
35 35 H 1.08999 * 109.63096 * 65.87648 * 12 11 10
36 36 H 0.96999 * 120.00179 * 5.11002 * 16 14 13
37 37 H 1.09004 * 109.46962 * 64.77704 * 18 17 16
38 38 H 1.09005 * 109.47269 * 184.77277 * 18 17 16
39 39 H 1.07998 * 119.99375 * 0.02562 * 20 19 18
40 40 H 1.08005 * 119.99533 * 180.27609 * 21 20 19
41 41 H 1.08005 * 120.00180 * 179.83309 * 22 21 20
42 42 H 1.07995 * 120.00138 * 180.02562 * 23 22 21
43 43 H 1.08004 * 120.00254 * 180.02562 * 24 23 22
44 44 H 1.09004 * 117.49097 * 359.97438 * 25 17 16
45 45 H 1.08998 * 117.49746 * 145.02147 * 25 17 16
46 46 H 1.08996 * 117.49869 * 252.50887 * 26 25 17
47 47 H 1.08998 * 117.51745 * 107.47097 * 26 25 17
48 48 H 1.09003 * 109.63128 * 68.25599 * 27 13 12
49 49 H 1.08999 * 109.62228 * 188.82929 * 27 13 12
50 50 H 1.08996 * 109.49396 * 292.70457 * 28 10 9
51 51 H 1.08996 * 109.49345 * 52.79031 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2841 2.7465 -0.0006
6 1 3.1028 1.6964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 7 2.2010 -3.6130 0.1212
11 6 3.0768 -3.6889 -1.0558
12 6 3.9250 -4.9626 -0.9759
13 7 4.6214 -4.9797 0.3195
14 6 5.9523 -5.1805 0.3868
15 8 6.5796 -5.4412 -0.6216
16 7 6.5880 -5.0924 1.5720
17 6 8.0479 -5.1996 1.6299
18 6 8.5989 -6.6151 1.8139
19 6 7.9884 -7.2359 3.0438
20 6 8.5448 -6.9984 4.2868
21 6 7.9821 -7.5643 5.4154
22 6 6.8684 -8.3751 5.3002
23 6 6.3152 -8.6168 4.0567
24 6 6.8752 -8.0473 2.9285
25 6 8.8151 -4.0513 2.2885
26 6 8.8621 -4.2308 0.7698
27 6 3.8256 -4.7779 1.5399
28 6 2.9822 -3.5056 1.3606
29 1 -0.4851 0.8400 -0.0004
30 1 0.6938 -2.5969 -0.9322
31 1 0.5584 -2.5188 0.8408
32 1 3.7308 -2.8172 -1.0794
33 1 2.4691 -3.7127 -1.9604
34 1 4.6559 -4.9672 -1.7845
35 1 3.2801 -5.8377 -1.0565
36 1 6.0789 -4.9581 2.3867
37 1 8.3500 -7.2182 0.9407
38 1 9.6821 -6.5713 1.9284
39 1 9.4168 -6.3676 4.3764
40 1 8.4142 -7.3751 6.3870
41 1 6.4304 -8.8194 6.1818
42 1 5.4449 -9.2499 3.9667
43 1 6.4427 -8.2359 1.9570
44 1 8.2334 -3.2159 2.6784
45 1 9.7124 -4.3041 2.8532
46 1 9.7904 -4.6018 0.3354
47 1 8.3114 -3.5141 0.1607
48 1 3.1713 -5.6356 1.6965
49 1 4.4907 -4.6603 2.3954
50 1 3.6376 -2.6366 1.3033
51 1 2.3060 -3.3966 2.2084
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000603435112.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:10
Heat of formation + Delta-G solvation = 38.512411 kcal
Electronic energy + Delta-G solvation = -30677.248344 eV
Core-core repulsion = 26770.527639 eV
Total energy + Delta-G solvation = -3906.720705 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.48705 -39.41890 -38.13714 -36.93358 -34.39880 -32.89319 -32.50848 -32.11368
-31.05202 -30.43153 -28.02701 -27.26992 -25.33596 -23.23636 -22.90491 -22.73106
-22.45493 -21.84068 -21.05848 -19.72307 -19.00851 -17.88402 -17.04733 -16.38056
-16.26876 -15.57680 -15.39402 -15.26355 -14.98737 -14.77754 -14.51107 -14.38367
-13.88627 -13.81417 -13.61538 -13.45022 -13.36813 -13.15288 -12.77038 -12.45222
-12.37635 -12.08983 -11.83654 -11.64067 -11.46441 -11.20132 -11.16606 -11.09956
-11.00142 -10.79867 -10.67746 -10.61537 -10.28337 -10.07450 -9.93922 -9.76710
-9.63219 -9.23891 -9.09166 -8.77995 -8.48619 -8.27073 -7.26999 -6.08441
-4.18044 1.16998 1.22619 2.72472 3.24554 3.29982 3.32473 3.39587
3.54762 3.63761 3.94099 4.35822 4.45871 4.62886 4.69030 4.79546
4.83744 4.88076 4.92201 5.00074 5.21045 5.21979 5.33584 5.33989
5.45362 5.48124 5.50075 5.54849 5.55406 5.67919 5.75897 5.82845
5.86849 5.90794 5.93635 5.99990 6.04010 6.14955 6.28583 6.34336
6.41102 6.46108 6.60328 6.65610 6.71432 6.75134 6.82904 7.13796
7.18853 7.45342 7.83015 7.93803 8.12885 8.17668 8.22283 8.80426
8.91680 9.49318 10.96598
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.013434 B = 0.002786 C = 0.002698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2083.803895 B =10046.920831 C =10374.942314
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.067 3.933
3 Si 0.889 3.111
4 H -0.277 1.277
5 H -0.286 1.286
6 H -0.278 1.278
7 C -0.552 4.552
8 H 0.055 0.945
9 C 0.188 3.812
10 N -0.539 5.539
11 C 0.049 3.951
12 C 0.135 3.865
13 N -0.623 5.623
14 C 0.710 3.290
15 O -0.591 6.591
16 N -0.715 5.715
17 C 0.126 3.874
18 C -0.051 4.051
19 C -0.072 4.072
20 C -0.116 4.116
21 C -0.121 4.121
22 C -0.126 4.126
23 C -0.118 4.118
24 C -0.109 4.109
25 C -0.177 4.177
26 C -0.152 4.152
27 C 0.116 3.884
28 C 0.052 3.948
29 H 0.263 0.737
30 H 0.029 0.971
31 H 0.036 0.964
32 H 0.040 0.960
33 H 0.078 0.922
34 H 0.086 0.914
35 H 0.065 0.935
36 H 0.397 0.603
37 H 0.082 0.918
38 H 0.082 0.918
39 H 0.119 0.881
40 H 0.119 0.881
41 H 0.118 0.882
42 H 0.120 0.880
43 H 0.118 0.882
44 H 0.098 0.902
45 H 0.101 0.899
46 H 0.100 0.900
47 H 0.099 0.901
48 H 0.071 0.929
49 H 0.067 0.933
50 H 0.043 0.957
51 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.583 -15.209 9.450 24.405
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.136 4.136
3 Si 0.716 3.284
4 H -0.202 1.202
5 H -0.211 1.211
6 H -0.203 1.203
7 C -0.591 4.591
8 H 0.073 0.927
9 C 0.063 3.937
10 N -0.264 5.264
11 C -0.081 4.081
12 C 0.012 3.988
13 N -0.360 5.360
14 C 0.412 3.588
15 O -0.470 6.470
16 N -0.372 5.372
17 C 0.037 3.963
18 C -0.090 4.090
19 C -0.072 4.072
20 C -0.134 4.134
21 C -0.139 4.139
22 C -0.144 4.144
23 C -0.136 4.136
24 C -0.127 4.127
25 C -0.215 4.215
26 C -0.190 4.190
27 C -0.008 4.008
28 C -0.077 4.077
29 H 0.073 0.927
30 H 0.047 0.953
31 H 0.054 0.946
32 H 0.059 0.941
33 H 0.096 0.904
34 H 0.105 0.895
35 H 0.083 0.917
36 H 0.234 0.766
37 H 0.101 0.899
38 H 0.100 0.900
39 H 0.137 0.863
40 H 0.137 0.863
41 H 0.136 0.864
42 H 0.138 0.862
43 H 0.136 0.864
44 H 0.116 0.884
45 H 0.120 0.880
46 H 0.118 0.882
47 H 0.118 0.882
48 H 0.089 0.911
49 H 0.085 0.915
50 H 0.061 0.939
51 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 16.571 -15.697 8.711 24.431
hybrid contribution 0.425 1.988 0.494 2.092
sum 16.996 -13.709 9.205 23.697
Atomic orbital electron populations
1.69927 1.05986 1.27026 1.49875 1.24947 0.94760 0.99122 0.94811
0.86714 0.79705 0.83309 0.78644 1.20249 1.21120 1.20312 1.21691
0.93198 0.92137 1.52069 0.92720 1.19758 0.90705 0.85317 0.97948
1.62481 1.16913 1.46520 1.00444 1.22286 0.95206 0.95527 0.95060
1.21683 0.94686 0.98478 0.83955 1.47349 1.05011 1.75176 1.08506
1.15804 0.81489 0.77913 0.83569 1.90876 1.65641 1.56093 1.34362
1.44512 1.05212 1.79272 1.08236 1.20118 0.79230 0.90576 1.06339
1.20377 0.99212 0.93582 0.95818 1.19781 0.95847 0.96987 0.94622
1.21015 1.00259 1.00058 0.92055 1.21114 0.96538 0.97843 0.98393
1.21132 0.96684 0.99135 0.97475 1.21160 0.99881 0.99926 0.92666
1.21085 0.95739 0.97154 0.98690 1.23421 1.01974 0.99692 0.96413
1.23170 1.01346 1.01514 0.92982 1.21928 0.93738 0.99441 0.85667
1.22278 0.96148 0.94597 0.94721 0.92683 0.95289 0.94620 0.94139
0.90406 0.89528 0.91689 0.76561 0.89930 0.89967 0.86287 0.86308
0.86351 0.86216 0.86377 0.88376 0.88045 0.88172 0.88232 0.91114
0.91513 0.93864 0.90499
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16
2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16
3 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16
4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
7 C -0.55 -14.84 7.75 -34.45 -0.27 -15.10 16
8 H 0.05 1.48 5.88 -52.49 -0.31 1.17 16
9 C 0.19 4.68 5.11 -4.98 -0.03 4.65 16
10 N -0.54 -11.01 4.83 -235.47 -1.14 -12.15 16
11 C 0.05 0.93 5.24 -3.70 -0.02 0.91 16
12 C 0.14 2.22 6.58 -3.60 -0.02 2.19 16
13 N -0.62 -9.80 3.00 -177.91 -0.53 -10.33 16
14 C 0.71 11.27 8.15 -86.92 -0.71 10.56 16
15 O -0.59 -11.07 15.20 5.29 0.08 -10.99 16
16 N -0.72 -9.01 5.06 -52.41 -0.27 -9.28 16
17 C 0.13 1.38 1.84 -131.81 -0.24 1.14 16
18 C -0.05 -0.50 5.44 -27.88 -0.15 -0.65 16
19 C -0.07 -0.70 4.86 -104.62 -0.51 -1.20 16
20 C -0.12 -0.99 9.72 -39.58 -0.38 -1.38 16
21 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16
22 C -0.13 -1.07 10.05 -39.59 -0.40 -1.46 16
23 C -0.12 -1.09 10.05 -39.59 -0.40 -1.48 16
24 C -0.11 -1.10 9.68 -39.58 -0.38 -1.48 16
25 C -0.18 -1.62 10.15 -26.73 -0.27 -1.90 16
26 C -0.15 -1.71 9.21 -26.73 -0.25 -1.95 16
27 C 0.12 1.66 6.63 -3.36 -0.02 1.64 16
28 C 0.05 0.95 5.17 -3.47 -0.02 0.93 16
29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
30 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16
31 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16
32 H 0.04 0.87 6.92 -51.93 -0.36 0.51 16
33 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16
34 H 0.09 1.45 7.10 -51.93 -0.37 1.08 16
35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
36 H 0.40 4.57 6.33 -40.82 -0.26 4.31 16
37 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16
38 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16
39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16
40 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16
41 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16
42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16
43 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16
44 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16
45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16
46 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16
47 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16
48 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
49 H 0.07 0.79 5.63 -51.93 -0.29 0.50 16
50 H 0.04 0.89 6.79 -51.93 -0.35 0.53 16
51 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16
LS Contribution 407.95 15.07 6.15 6.15
Total: -1.00 -31.02 407.95 -12.80 -43.82
By element:
Atomic # 1 Polarization: 14.02 SS G_CDS: -8.24 Total: 5.77 kcal
Atomic # 6 Polarization: 0.32 SS G_CDS: -4.56 Total: -4.24 kcal
Atomic # 7 Polarization: -55.55 SS G_CDS: -1.20 Total: -56.75 kcal
Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -31.02 -12.80 -43.82 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000603435112.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.331 kcal
(2) G-P(sol) polarization free energy of solvation -31.019 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.312 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.800 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.512 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds