Wall clock time and date at job start Sat Apr 11 2020 07:00:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86801 * 119.99614 * 2 1
4 4 H 1.48506 * 109.47105 * 239.99969 * 3 2 1
5 5 H 1.48494 * 109.47441 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.46681 * 120.00410 * 3 2 1
7 7 C 1.37871 * 119.99846 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99569 * 179.97438 * 7 2 1
9 9 C 1.50694 * 120.00327 * 359.97438 * 7 2 1
10 10 N 1.46902 * 109.47383 * 185.06734 * 9 7 2
11 11 C 1.46906 * 110.99805 * 295.05586 * 10 9 7
12 12 C 1.53233 * 109.33974 * 187.25386 * 11 10 9
13 13 N 1.47083 * 108.52182 * 306.16622 * 12 11 10
14 14 C 1.34773 * 120.88203 * 231.18773 * 13 12 11
15 15 O 1.21588 * 120.00206 * 354.98187 * 14 13 12
16 16 N 1.34780 * 119.99717 * 174.98168 * 14 13 12
17 17 C 1.46495 * 119.99903 * 185.10158 * 16 14 13
18 18 C 1.53007 * 115.55093 * 270.03976 * 17 16 14
19 19 C 1.50693 * 109.47049 * 304.77632 * 18 17 16
20 20 C 1.38243 * 120.00175 * 275.09415 * 19 18 17
21 21 C 1.38228 * 119.99951 * 179.78881 * 20 19 18
22 22 C 1.38231 * 120.00194 * 0.44401 * 21 20 19
23 23 C 1.38233 * 120.00084 * 359.81088 * 22 21 20
24 24 C 1.38231 * 119.99989 * 359.97438 * 23 22 21
25 25 C 1.53002 * 117.50137 * 124.33204 * 17 16 14
26 26 C 1.53001 * 60.00189 * 252.50927 * 25 17 16
27 27 C 1.47083 * 118.23066 * 51.46014 * 13 12 11
28 28 C 1.46896 * 111.00047 * 59.35391 * 10 9 7
29 29 H 0.97003 * 120.00406 * 0.02562 * 1 2 3
30 30 H 1.09000 * 109.47130 * 65.06517 * 9 7 2
31 31 H 1.09002 * 109.47410 * 305.06760 * 9 7 2
32 32 H 1.08998 * 109.49032 * 67.28959 * 11 10 9
33 33 H 1.09004 * 109.49091 * 307.21360 * 11 10 9
34 34 H 1.08997 * 109.62956 * 186.45933 * 12 11 10
35 35 H 1.08999 * 109.63096 * 65.87648 * 12 11 10
36 36 H 0.96999 * 120.00179 * 5.11002 * 16 14 13
37 37 H 1.09004 * 109.46962 * 64.77704 * 18 17 16
38 38 H 1.09005 * 109.47269 * 184.77277 * 18 17 16
39 39 H 1.07998 * 119.99375 * 0.02562 * 20 19 18
40 40 H 1.08005 * 119.99533 * 180.27609 * 21 20 19
41 41 H 1.08005 * 120.00180 * 179.83309 * 22 21 20
42 42 H 1.07995 * 120.00138 * 180.02562 * 23 22 21
43 43 H 1.08004 * 120.00254 * 180.02562 * 24 23 22
44 44 H 1.09004 * 117.49097 * 359.97438 * 25 17 16
45 45 H 1.08998 * 117.49746 * 145.02147 * 25 17 16
46 46 H 1.08996 * 117.49869 * 252.50887 * 26 25 17
47 47 H 1.08998 * 117.51745 * 107.47097 * 26 25 17
48 48 H 1.09003 * 109.63128 * 68.25599 * 27 13 12
49 49 H 1.08999 * 109.62228 * 188.82929 * 27 13 12
50 50 H 1.08996 * 109.49396 * 292.70457 * 28 10 9
51 51 H 1.08996 * 109.49345 * 52.79031 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2841 2.7465 -0.0006
6 1 3.1028 1.6964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 7 2.2010 -3.6130 0.1212
11 6 3.0768 -3.6889 -1.0558
12 6 3.9250 -4.9626 -0.9759
13 7 4.6214 -4.9797 0.3195
14 6 5.9523 -5.1805 0.3868
15 8 6.5796 -5.4412 -0.6216
16 7 6.5880 -5.0924 1.5720
17 6 8.0479 -5.1996 1.6299
18 6 8.5989 -6.6151 1.8139
19 6 7.9884 -7.2359 3.0438
20 6 8.5448 -6.9984 4.2868
21 6 7.9821 -7.5643 5.4154
22 6 6.8684 -8.3751 5.3002
23 6 6.3152 -8.6168 4.0567
24 6 6.8752 -8.0473 2.9285
25 6 8.8151 -4.0513 2.2885
26 6 8.8621 -4.2308 0.7698
27 6 3.8256 -4.7779 1.5399
28 6 2.9822 -3.5056 1.3606
29 1 -0.4851 0.8400 -0.0004
30 1 0.6938 -2.5969 -0.9322
31 1 0.5584 -2.5188 0.8408
32 1 3.7308 -2.8172 -1.0794
33 1 2.4691 -3.7127 -1.9604
34 1 4.6559 -4.9672 -1.7845
35 1 3.2801 -5.8377 -1.0565
36 1 6.0789 -4.9581 2.3867
37 1 8.3500 -7.2182 0.9407
38 1 9.6821 -6.5713 1.9284
39 1 9.4168 -6.3676 4.3764
40 1 8.4142 -7.3751 6.3870
41 1 6.4304 -8.8194 6.1818
42 1 5.4449 -9.2499 3.9667
43 1 6.4427 -8.2359 1.9570
44 1 8.2334 -3.2159 2.6784
45 1 9.7124 -4.3041 2.8532
46 1 9.7904 -4.6018 0.3354
47 1 8.3114 -3.5141 0.1607
48 1 3.1713 -5.6356 1.6965
49 1 4.4907 -4.6603 2.3954
50 1 3.6376 -2.6366 1.3033
51 1 2.3060 -3.3966 2.2084
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000603435112.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:09
Heat of formation + Delta-G solvation = 20.772671 kcal
Electronic energy + Delta-G solvation = -30678.017597 eV
Core-core repulsion = 26770.527639 eV
Total energy + Delta-G solvation = -3907.489958 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.62045 -40.27342 -39.31357 -38.13677 -35.98602 -34.50705 -33.65750 -33.19222
-31.83688 -31.67586 -29.76229 -28.01399 -27.12893 -24.65553 -24.36758 -23.60976
-23.24446 -22.82938 -22.21349 -20.96814 -20.20404 -19.22803 -18.35044 -17.79928
-17.17052 -16.86650 -16.64729 -16.42774 -15.99462 -15.97828 -15.72762 -15.57771
-15.43847 -15.25201 -14.94977 -14.42120 -14.20547 -14.18742 -13.93154 -13.70377
-13.54719 -13.20870 -13.08336 -12.97888 -12.93610 -12.56021 -12.48019 -12.42180
-12.27002 -12.13220 -11.98138 -11.86361 -11.85222 -11.66750 -11.58426 -11.15503
-10.75421 -10.63457 -10.28159 -9.74529 -9.65821 -9.44264 -9.05080 -8.19077
-6.38424 0.51616 0.57788 1.33491 1.34692 1.42783 1.57573 2.15396
2.33700 2.75447 2.81624 2.95170 3.05920 3.29033 3.67274 3.86976
3.95302 3.99015 4.08181 4.09865 4.15090 4.20520 4.24793 4.33887
4.36890 4.46964 4.53752 4.60294 4.71090 4.74794 4.75327 4.75460
4.85912 4.87623 4.95962 5.01142 5.03321 5.16010 5.19182 5.21435
5.21978 5.26954 5.29755 5.45754 5.64593 5.66899 5.70245 5.70941
5.83239 5.88943 6.01160 6.19619 6.20060 6.43573 6.81256 6.95481
7.33068 7.57824 8.83080
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.013434 B = 0.002786 C = 0.002698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2083.803895 B =10046.920831 C =10374.942314
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C 0.016 3.984
3 Si 0.952 3.048
4 H -0.275 1.275
5 H -0.279 1.279
6 H -0.270 1.270
7 C -0.558 4.558
8 H 0.049 0.951
9 C 0.202 3.798
10 N -0.535 5.535
11 C 0.055 3.945
12 C 0.147 3.853
13 N -0.628 5.628
14 C 0.708 3.292
15 O -0.623 6.623
16 N -0.704 5.704
17 C 0.111 3.889
18 C -0.043 4.043
19 C -0.080 4.080
20 C -0.117 4.117
21 C -0.124 4.124
22 C -0.132 4.132
23 C -0.129 4.129
24 C -0.126 4.126
25 C -0.149 4.149
26 C -0.169 4.169
27 C 0.129 3.871
28 C 0.054 3.946
29 H 0.266 0.734
30 H 0.005 0.995
31 H 0.014 0.986
32 H 0.012 0.988
33 H 0.076 0.924
34 H 0.083 0.917
35 H 0.081 0.919
36 H 0.404 0.596
37 H 0.058 0.942
38 H 0.105 0.895
39 H 0.140 0.860
40 H 0.141 0.859
41 H 0.136 0.864
42 H 0.127 0.873
43 H 0.102 0.898
44 H 0.095 0.905
45 H 0.133 0.867
46 H 0.114 0.886
47 H 0.067 0.933
48 H 0.087 0.913
49 H 0.096 0.904
50 H 0.018 0.982
51 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.722 -15.597 11.755 27.055
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.184 4.184
3 Si 0.777 3.223
4 H -0.201 1.201
5 H -0.204 1.204
6 H -0.195 1.195
7 C -0.597 4.597
8 H 0.067 0.933
9 C 0.075 3.925
10 N -0.258 5.258
11 C -0.074 4.074
12 C 0.023 3.977
13 N -0.365 5.365
14 C 0.410 3.590
15 O -0.504 6.504
16 N -0.360 5.360
17 C 0.023 3.977
18 C -0.082 4.082
19 C -0.080 4.080
20 C -0.135 4.135
21 C -0.142 4.142
22 C -0.150 4.150
23 C -0.146 4.146
24 C -0.144 4.144
25 C -0.186 4.186
26 C -0.207 4.207
27 C 0.005 3.995
28 C -0.076 4.076
29 H 0.075 0.925
30 H 0.024 0.976
31 H 0.033 0.967
32 H 0.030 0.970
33 H 0.094 0.906
34 H 0.101 0.899
35 H 0.099 0.901
36 H 0.242 0.758
37 H 0.077 0.923
38 H 0.123 0.877
39 H 0.158 0.842
40 H 0.159 0.841
41 H 0.154 0.846
42 H 0.145 0.855
43 H 0.120 0.880
44 H 0.113 0.887
45 H 0.151 0.849
46 H 0.132 0.868
47 H 0.086 0.914
48 H 0.105 0.895
49 H 0.114 0.886
50 H 0.036 0.964
51 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 18.729 -16.098 11.052 27.057
hybrid contribution -0.234 2.069 -0.209 2.093
sum 18.495 -14.029 10.843 25.621
Atomic orbital electron populations
1.70035 1.07367 1.27988 1.50770 1.25734 0.95571 1.02555 0.94495
0.85705 0.78521 0.79276 0.78770 1.20080 1.20407 1.19471 1.21896
0.93008 0.93182 1.51617 0.93281 1.19422 0.91069 0.86310 0.95702
1.62416 1.17286 1.44167 1.01956 1.22245 0.94675 0.95961 0.94532
1.21490 0.94332 0.97292 0.84592 1.47379 1.05305 1.75272 1.08567
1.15939 0.81278 0.77694 0.84080 1.90851 1.66218 1.57549 1.35745
1.44438 1.06176 1.78118 1.07298 1.20423 0.78144 0.91846 1.07286
1.20302 1.00510 0.92262 0.95105 1.19790 0.95895 0.97272 0.95054
1.21255 1.00708 1.00052 0.91479 1.21441 0.96226 0.97153 0.99347
1.21414 0.96807 0.99039 0.97697 1.21323 1.00343 1.00143 0.92839
1.21074 0.96573 0.98357 0.98387 1.23508 1.02232 0.98087 0.94822
1.23146 1.01784 1.01475 0.94294 1.21905 0.93795 0.97738 0.86015
1.22323 0.95877 0.95857 0.93519 0.92486 0.97648 0.96748 0.96956
0.90571 0.89889 0.90070 0.75792 0.92282 0.87653 0.84207 0.84121
0.84606 0.85480 0.87999 0.88678 0.84856 0.86776 0.91424 0.89471
0.88605 0.96365 0.90310
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.17 13.29 21.45 0.28 -53.88 16
2 C 0.02 0.92 5.46 84.65 0.46 1.38 16
3 Si 0.95 43.86 29.54 68.60 2.03 45.89 16
4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16
6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
7 C -0.56 -30.68 7.75 25.60 0.20 -30.48 16
8 H 0.05 2.72 5.88 -2.91 -0.02 2.70 16
9 C 0.20 10.36 5.11 85.55 0.44 10.80 16
10 N -0.53 -22.19 4.83 -898.90 -4.34 -26.53 16
11 C 0.06 2.16 5.24 86.38 0.45 2.61 16
12 C 0.15 4.80 6.58 86.35 0.57 5.37 16
13 N -0.63 -19.40 3.00 -835.05 -2.51 -21.91 16
14 C 0.71 22.25 8.15 179.05 1.46 23.71 16
15 O -0.62 -23.59 15.20 -3.99 -0.06 -23.66 16
16 N -0.70 -16.96 5.06 -437.99 -2.22 -19.18 16
17 C 0.11 2.26 1.84 3.61 0.01 2.26 16
18 C -0.04 -0.77 5.44 29.85 0.16 -0.61 16
19 C -0.08 -1.39 4.86 -19.87 -0.10 -1.48 16
20 C -0.12 -1.62 9.72 22.27 0.22 -1.41 16
21 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16
22 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16
23 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16
24 C -0.13 -2.44 9.68 22.27 0.22 -2.22 16
25 C -0.15 -2.32 10.15 30.60 0.31 -2.00 16
26 C -0.17 -3.63 9.21 30.60 0.28 -3.35 16
27 C 0.13 3.49 6.63 86.50 0.57 4.06 16
28 C 0.05 1.94 5.17 86.54 0.45 2.39 16
29 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16
30 H 0.01 0.30 8.07 -2.39 -0.02 0.28 16
31 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16
32 H 0.01 0.54 6.92 -2.39 -0.02 0.53 16
33 H 0.08 2.96 8.05 -2.38 -0.02 2.94 16
34 H 0.08 2.82 7.10 -2.39 -0.02 2.80 16
35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16
36 H 0.40 8.50 6.33 -92.71 -0.59 7.92 16
37 H 0.06 1.33 8.05 -2.38 -0.02 1.32 16
38 H 0.11 1.36 8.07 -2.38 -0.02 1.34 16
39 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16
40 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16
41 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16
42 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16
43 H 0.10 2.24 8.06 -2.91 -0.02 2.21 16
44 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16
45 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16
46 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16
47 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16
48 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16
49 H 0.10 2.06 5.63 -2.39 -0.01 2.04 16
50 H 0.02 0.75 6.79 -2.39 -0.02 0.73 16
51 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16
Total: -1.00 -68.78 407.95 -0.11 -68.89
By element:
Atomic # 1 Polarization: 24.03 SS G_CDS: 0.33 Total: 24.36 kcal
Atomic # 6 Polarization: -0.35 SS G_CDS: 6.37 Total: 6.01 kcal
Atomic # 7 Polarization: -112.72 SS G_CDS: -8.78 Total: -121.50 kcal
Atomic # 8 Polarization: -23.59 SS G_CDS: -0.06 Total: -23.66 kcal
Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal
Total: -68.78 -0.11 -68.89 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000603435112.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.663 kcal
(2) G-P(sol) polarization free energy of solvation -68.778 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.886 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.890 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.773 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds