Wall clock time and date at job start Sat Apr 11 2020 06:58:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86799 * 120.00130 * 2 1
4 4 H 1.48489 * 109.47406 * 179.97438 * 3 2 1
5 5 H 1.48509 * 109.46874 * 299.99942 * 3 2 1
6 6 H 1.48499 * 109.47144 * 59.99437 * 3 2 1
7 7 C 1.38814 * 119.99987 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99652 * 163.07670 * 7 2 1
9 9 N 1.36938 * 120.00043 * 343.08763 * 7 2 1
10 10 C 1.46921 * 120.63017 * 151.83323 * 9 7 2
11 11 C 1.53195 * 108.77447 * 126.36882 * 10 9 7
12 12 C 1.53035 * 109.31714 * 54.63101 * 11 10 9
13 13 N 1.46494 * 109.46183 * 178.62762 * 12 11 10
14 14 C 1.34775 * 119.99980 * 205.02425 * 13 12 11
15 15 O 1.21581 * 120.00079 * 0.02562 * 14 13 12
16 16 N 1.34781 * 119.99903 * 179.97438 * 14 13 12
17 17 C 1.46498 * 120.00095 * 180.02562 * 16 14 13
18 18 H 1.09002 * 115.55037 * 9.27883 * 17 16 14
19 19 C 1.52998 * 117.49965 * 223.61028 * 17 16 14
20 20 C 1.52993 * 59.99918 * 252.50831 * 19 17 16
21 21 H 1.09002 * 117.49968 * 252.50970 * 20 19 17
22 22 C 1.53002 * 117.50307 * 107.48979 * 20 19 17
23 23 C 1.50696 * 109.47466 * 116.37336 * 22 20 19
24 24 C 1.38233 * 120.00285 * 269.73564 * 23 22 20
25 25 C 1.38237 * 120.00070 * 179.79155 * 24 23 22
26 26 C 1.38232 * 119.99801 * 0.45406 * 25 24 23
27 27 C 1.38235 * 120.00377 * 359.77064 * 26 25 24
28 28 C 1.38234 * 119.99685 * 90.00315 * 23 22 20
29 29 C 1.53043 * 109.52823 * 298.64561 * 12 11 10
30 30 C 1.46926 * 120.62731 * 331.80308 * 9 7 2
31 31 H 0.96996 * 119.99377 * 0.02562 * 1 2 3
32 32 H 1.08996 * 109.58667 * 6.57753 * 10 9 7
33 33 H 1.09006 * 109.70058 * 246.22350 * 10 9 7
34 34 H 1.08996 * 109.49316 * 294.67921 * 11 10 9
35 35 H 1.09006 * 109.49349 * 174.58321 * 11 10 9
36 36 H 1.09006 * 109.46117 * 58.65432 * 12 11 10
37 37 H 0.96997 * 120.00243 * 25.02920 * 13 12 11
38 38 H 0.97003 * 120.00096 * 0.02562 * 16 14 13
39 39 H 1.09004 * 117.49788 * 359.97438 * 19 17 16
40 40 H 1.09006 * 117.50087 * 144.99566 * 19 17 16
41 41 H 1.08999 * 109.47157 * 236.37972 * 22 20 19
42 42 H 1.09006 * 109.46507 * 356.37403 * 22 20 19
43 43 H 1.08002 * 120.00071 * 359.97438 * 24 23 22
44 44 H 1.08002 * 119.99999 * 180.25073 * 25 24 23
45 45 H 1.08004 * 120.00155 * 179.79620 * 26 25 24
46 46 H 1.07996 * 120.00382 * 179.97438 * 27 26 25
47 47 H 1.08002 * 120.00180 * 359.97438 * 28 23 22
48 48 H 1.08998 * 109.50007 * 181.30693 * 29 12 11
49 49 H 1.09003 * 109.49438 * 301.40558 * 29 12 11
50 50 H 1.08997 * 109.59142 * 353.42466 * 30 9 7
51 51 H 1.09005 * 109.58436 * 113.70719 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7102 1.3464 0.0006
5 1 1.8915 2.3964 -1.2126
6 1 1.8915 2.3965 1.2124
7 6 2.0103 -1.2022 0.0005
8 1 3.0553 -1.2225 -0.2717
9 7 1.3701 -2.3623 0.3460
10 6 1.8141 -3.6529 -0.1979
11 6 2.0683 -4.6169 0.9653
12 6 0.8134 -4.7005 1.8371
13 7 1.0418 -5.6466 2.9320
14 6 -0.0026 -6.2692 3.5135
15 8 -1.1342 -6.0459 3.1292
16 7 0.2076 -7.1400 4.5205
17 6 -0.9275 -7.8172 5.1523
18 1 -1.8885 -7.6877 4.6545
19 6 -0.9304 -7.9162 6.6791
20 6 -0.6590 -9.1612 5.8322
21 1 -1.4435 -9.9163 5.7818
22 6 0.7744 -9.6953 5.8003
23 6 0.8106 -11.0738 6.4080
24 6 1.0356 -11.2260 7.7634
25 6 1.0645 -12.4903 8.3216
26 6 0.8777 -13.6029 7.5227
27 6 0.6573 -13.4510 6.1666
28 6 0.6242 -12.1864 5.6091
29 6 0.4987 -3.3186 2.4146
30 6 0.2265 -2.3400 1.2682
31 1 -0.4849 0.8401 -0.0004
32 1 2.7345 -3.5133 -0.7647
33 1 1.0420 -4.0621 -0.8496
34 1 2.9034 -4.2527 1.5637
35 1 2.3053 -5.6059 0.5729
36 1 -0.0270 -5.0411 1.2322
37 1 1.9446 -5.8250 3.2385
38 1 1.1105 -7.3184 4.8269
39 1 -0.0875 -7.4778 7.2134
40 1 -1.8934 -7.8518 7.1858
41 1 1.1210 -9.7440 4.7680
42 1 1.4228 -9.0297 6.3703
43 1 1.1859 -10.3569 8.3868
44 1 1.2363 -12.6090 9.3812
45 1 0.9035 -14.5909 7.9582
46 1 0.5117 -14.3202 5.5424
47 1 0.4523 -12.0677 4.5495
48 1 -0.3817 -3.3833 3.0540
49 1 1.3486 -2.9666 2.9994
50 1 0.0994 -1.3343 1.6687
51 1 -0.6772 -2.6386 0.7369
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000610350829.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:43
Heat of formation + Delta-G solvation = 33.828130 kcal
Electronic energy + Delta-G solvation = -28851.955397 eV
Core-core repulsion = 24945.031566 eV
Total energy + Delta-G solvation = -3906.923831 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-40.23984 -39.60682 -38.14247 -37.08665 -34.33973 -33.46768 -32.45647 -31.65438
-31.23895 -29.95107 -29.26038 -27.44326 -25.03368 -22.99969 -22.75697 -22.24421
-22.18383 -21.66733 -20.88471 -20.13109 -19.44244 -18.22478 -17.14965 -16.80145
-16.37626 -15.74623 -15.51449 -15.13468 -14.98607 -14.78716 -14.70135 -14.08228
-13.78289 -13.70983 -13.47226 -13.43446 -13.27798 -12.98485 -12.81779 -12.66219
-12.55619 -12.30480 -11.86871 -11.73491 -11.46009 -11.38917 -11.16243 -11.10601
-10.88445 -10.72576 -10.36600 -10.28127 -10.19613 -10.09106 -9.96606 -9.73549
-9.52543 -9.27859 -9.14108 -8.85959 -8.55274 -8.35923 -6.66071 -5.76548
-3.19680 0.99055 1.04411 2.70370 3.19403 3.38358 3.41864 3.46066
3.48137 3.72170 4.22476 4.26441 4.48216 4.50979 4.60816 4.65448
4.68764 4.74643 4.80024 4.99684 5.15864 5.16265 5.31770 5.39077
5.40591 5.42619 5.48522 5.54983 5.64210 5.67727 5.70514 5.71619
5.86708 5.89042 6.11368 6.12035 6.16131 6.26497 6.27767 6.38860
6.46150 6.48089 6.62315 6.65010 6.68217 6.79577 6.92352 6.97378
7.12326 7.42083 7.71845 7.81885 8.14113 8.47274 8.76690 9.23126
9.86474 10.43308 11.31959
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.028168 B = 0.001666 C = 0.001641
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 993.810751 B =16802.447332 C =17055.139837
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.901 5.901
2 C 0.002 3.998
3 Si 0.902 3.098
4 H -0.278 1.278
5 H -0.290 1.290
6 H -0.289 1.289
7 C -0.254 4.254
8 H 0.066 0.934
9 N -0.592 5.592
10 C 0.149 3.851
11 C -0.138 4.138
12 C 0.169 3.831
13 N -0.739 5.739
14 C 0.705 3.295
15 O -0.586 6.586
16 N -0.722 5.722
17 C 0.113 3.887
18 H 0.139 0.861
19 C -0.192 4.192
20 C -0.158 4.158
21 H 0.112 0.888
22 C -0.053 4.053
23 C -0.075 4.075
24 C -0.115 4.115
25 C -0.120 4.120
26 C -0.127 4.127
27 C -0.119 4.119
28 C -0.117 4.117
29 C -0.146 4.146
30 C 0.173 3.827
31 H 0.253 0.747
32 H 0.058 0.942
33 H 0.020 0.980
34 H 0.062 0.938
35 H 0.055 0.945
36 H 0.082 0.918
37 H 0.390 0.610
38 H 0.394 0.606
39 H 0.096 0.904
40 H 0.101 0.899
41 H 0.079 0.921
42 H 0.073 0.927
43 H 0.121 0.879
44 H 0.120 0.880
45 H 0.119 0.881
46 H 0.121 0.879
47 H 0.122 0.878
48 H 0.053 0.947
49 H 0.053 0.947
50 H 0.089 0.911
51 H 0.021 0.979
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.867 -25.770 16.335 30.645
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.545 5.545
2 C -0.196 4.196
3 Si 0.731 3.269
4 H -0.203 1.203
5 H -0.217 1.217
6 H -0.216 1.216
7 C -0.383 4.383
8 H 0.084 0.916
9 N -0.315 5.315
10 C 0.021 3.979
11 C -0.178 4.178
12 C 0.065 3.935
13 N -0.392 5.392
14 C 0.405 3.595
15 O -0.463 6.463
16 N -0.376 5.376
17 C 0.006 3.994
18 H 0.157 0.843
19 C -0.231 4.231
20 C -0.178 4.178
21 H 0.130 0.870
22 C -0.090 4.090
23 C -0.075 4.075
24 C -0.133 4.133
25 C -0.138 4.138
26 C -0.145 4.145
27 C -0.137 4.137
28 C -0.135 4.135
29 C -0.187 4.187
30 C 0.047 3.953
31 H 0.064 0.936
32 H 0.076 0.924
33 H 0.038 0.962
34 H 0.081 0.919
35 H 0.073 0.927
36 H 0.100 0.900
37 H 0.222 0.778
38 H 0.228 0.772
39 H 0.115 0.885
40 H 0.119 0.881
41 H 0.097 0.903
42 H 0.091 0.909
43 H 0.139 0.861
44 H 0.138 0.862
45 H 0.137 0.863
46 H 0.139 0.861
47 H 0.140 0.860
48 H 0.072 0.928
49 H 0.072 0.928
50 H 0.107 0.893
51 H 0.039 0.961
Dipole moment (debyes) X Y Z Total
from point charges 1.714 -25.360 15.898 29.980
hybrid contribution 1.250 0.586 0.527 1.478
sum 2.964 -24.774 16.425 29.871
Atomic orbital electron populations
1.70051 1.05264 1.25413 1.53761 1.25068 0.95274 0.98438 1.00863
0.86239 0.79318 0.84028 0.77266 1.20284 1.21727 1.21596 1.19214
0.92539 0.84794 1.41792 0.91625 1.44107 1.35921 1.01505 1.49983
1.20835 0.97993 0.86747 0.92296 1.22345 0.96760 0.99676 0.99058
1.20918 0.98563 0.88052 0.85956 1.45524 1.07673 1.46908 1.39087
1.15940 0.85336 0.78746 0.79469 1.90929 1.21486 1.67793 1.66108
1.44487 1.08864 1.46556 1.37693 1.21466 0.91860 0.94392 0.91679
0.84328 1.23622 1.03775 1.00930 0.94753 1.22820 0.97938 0.91697
1.05296 0.87015 1.20144 0.94945 0.92746 1.01191 1.19809 0.98991
0.94931 0.93751 1.21066 1.00273 0.97373 0.94541 1.21156 1.00142
0.92688 0.99798 1.21155 1.00569 0.98709 0.94071 1.21165 0.99978
0.97305 0.95261 1.21108 1.00259 0.92185 0.99913 1.22570 1.00440
0.95250 1.00432 1.20757 0.88672 0.98091 0.87789 0.93641 0.92371
0.96168 0.91930 0.92674 0.90037 0.77761 0.77238 0.88545 0.88056
0.90280 0.90852 0.86128 0.86186 0.86277 0.86138 0.86004 0.92807
0.92830 0.89333 0.96085
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.47 11.20 55.49 0.62 -25.85 16
2 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16
3 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16
4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16
8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16
9 N -0.59 -14.83 2.99 -172.34 -0.52 -15.35 16
10 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16
11 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16
12 C 0.17 2.96 2.42 -67.89 -0.16 2.80 16
13 N -0.74 -10.36 5.08 -58.64 -0.30 -10.65 16
14 C 0.71 10.63 8.53 -86.92 -0.74 9.89 16
15 O -0.59 -11.53 15.57 5.29 0.08 -11.45 16
16 N -0.72 -7.69 5.35 -58.68 -0.31 -8.00 16
17 C 0.11 1.13 6.41 -67.94 -0.44 0.69 16
18 H 0.14 1.65 7.40 -51.93 -0.38 1.27 16
19 C -0.19 -1.49 10.10 -26.74 -0.27 -1.76 16
20 C -0.16 -1.18 5.72 -90.63 -0.52 -1.70 16
21 H 0.11 0.84 8.07 -51.93 -0.42 0.43 16
22 C -0.05 -0.35 4.54 -27.88 -0.13 -0.48 16
23 C -0.07 -0.55 5.09 -104.63 -0.53 -1.08 16
24 C -0.11 -0.81 9.70 -39.58 -0.38 -1.20 16
25 C -0.12 -0.81 10.05 -39.58 -0.40 -1.20 16
26 C -0.13 -0.84 10.05 -39.58 -0.40 -1.24 16
27 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16
28 C -0.12 -0.86 9.70 -39.58 -0.38 -1.25 16
29 C -0.15 -2.97 5.65 -26.62 -0.15 -3.12 16
30 C 0.17 4.26 5.30 -3.73 -0.02 4.24 16
31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16
32 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16
33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16
35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
36 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16
37 H 0.39 4.21 8.62 -40.82 -0.35 3.86 16
38 H 0.39 3.08 7.85 -40.82 -0.32 2.76 16
39 H 0.10 0.70 8.03 -51.93 -0.42 0.28 16
40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
41 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16
42 H 0.07 0.43 7.73 -51.93 -0.40 0.02 16
43 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16
44 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16
45 H 0.12 0.57 8.06 -52.48 -0.42 0.14 16
46 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16
47 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16
48 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16
49 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16
50 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16
51 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16
LS Contribution 411.78 15.07 6.21 6.21
Total: -1.00 -32.97 411.78 -13.02 -46.00
By element:
Atomic # 1 Polarization: 14.01 SS G_CDS: -8.46 Total: 5.56 kcal
Atomic # 6 Polarization: 2.18 SS G_CDS: -5.32 Total: -3.14 kcal
Atomic # 7 Polarization: -59.34 SS G_CDS: -0.51 Total: -59.85 kcal
Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal
Total LS contribution 6.21 Total: 6.21 kcal
Total: -32.97 -13.02 -46.00 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610350829.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.825 kcal
(2) G-P(sol) polarization free energy of solvation -32.972 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.853 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds