Wall clock time and date at job start Sat Apr 11 2020 06:58:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86799 * 120.00130 * 2 1
4 4 H 1.48489 * 109.47406 * 179.97438 * 3 2 1
5 5 H 1.48509 * 109.46874 * 299.99942 * 3 2 1
6 6 H 1.48499 * 109.47144 * 59.99437 * 3 2 1
7 7 C 1.38814 * 119.99987 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99652 * 163.07670 * 7 2 1
9 9 N 1.36938 * 120.00043 * 343.08763 * 7 2 1
10 10 C 1.46921 * 120.63017 * 151.83323 * 9 7 2
11 11 C 1.53195 * 108.77447 * 126.36882 * 10 9 7
12 12 C 1.53035 * 109.31714 * 54.63101 * 11 10 9
13 13 N 1.46494 * 109.46183 * 178.62762 * 12 11 10
14 14 C 1.34775 * 119.99980 * 205.02425 * 13 12 11
15 15 O 1.21581 * 120.00079 * 0.02562 * 14 13 12
16 16 N 1.34781 * 119.99903 * 179.97438 * 14 13 12
17 17 C 1.46498 * 120.00095 * 180.02562 * 16 14 13
18 18 H 1.09002 * 115.55037 * 9.27883 * 17 16 14
19 19 C 1.52998 * 117.49965 * 223.61028 * 17 16 14
20 20 C 1.52993 * 59.99918 * 252.50831 * 19 17 16
21 21 H 1.09002 * 117.49968 * 252.50970 * 20 19 17
22 22 C 1.53002 * 117.50307 * 107.48979 * 20 19 17
23 23 C 1.50696 * 109.47466 * 116.37336 * 22 20 19
24 24 C 1.38233 * 120.00285 * 269.73564 * 23 22 20
25 25 C 1.38237 * 120.00070 * 179.79155 * 24 23 22
26 26 C 1.38232 * 119.99801 * 0.45406 * 25 24 23
27 27 C 1.38235 * 120.00377 * 359.77064 * 26 25 24
28 28 C 1.38234 * 119.99685 * 90.00315 * 23 22 20
29 29 C 1.53043 * 109.52823 * 298.64561 * 12 11 10
30 30 C 1.46926 * 120.62731 * 331.80308 * 9 7 2
31 31 H 0.96996 * 119.99377 * 0.02562 * 1 2 3
32 32 H 1.08996 * 109.58667 * 6.57753 * 10 9 7
33 33 H 1.09006 * 109.70058 * 246.22350 * 10 9 7
34 34 H 1.08996 * 109.49316 * 294.67921 * 11 10 9
35 35 H 1.09006 * 109.49349 * 174.58321 * 11 10 9
36 36 H 1.09006 * 109.46117 * 58.65432 * 12 11 10
37 37 H 0.96997 * 120.00243 * 25.02920 * 13 12 11
38 38 H 0.97003 * 120.00096 * 0.02562 * 16 14 13
39 39 H 1.09004 * 117.49788 * 359.97438 * 19 17 16
40 40 H 1.09006 * 117.50087 * 144.99566 * 19 17 16
41 41 H 1.08999 * 109.47157 * 236.37972 * 22 20 19
42 42 H 1.09006 * 109.46507 * 356.37403 * 22 20 19
43 43 H 1.08002 * 120.00071 * 359.97438 * 24 23 22
44 44 H 1.08002 * 119.99999 * 180.25073 * 25 24 23
45 45 H 1.08004 * 120.00155 * 179.79620 * 26 25 24
46 46 H 1.07996 * 120.00382 * 179.97438 * 27 26 25
47 47 H 1.08002 * 120.00180 * 359.97438 * 28 23 22
48 48 H 1.08998 * 109.50007 * 181.30693 * 29 12 11
49 49 H 1.09003 * 109.49438 * 301.40558 * 29 12 11
50 50 H 1.08997 * 109.59142 * 353.42466 * 30 9 7
51 51 H 1.09005 * 109.58436 * 113.70719 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7102 1.3464 0.0006
5 1 1.8915 2.3964 -1.2126
6 1 1.8915 2.3965 1.2124
7 6 2.0103 -1.2022 0.0005
8 1 3.0553 -1.2225 -0.2717
9 7 1.3701 -2.3623 0.3460
10 6 1.8141 -3.6529 -0.1979
11 6 2.0683 -4.6169 0.9653
12 6 0.8134 -4.7005 1.8371
13 7 1.0418 -5.6466 2.9320
14 6 -0.0026 -6.2692 3.5135
15 8 -1.1342 -6.0459 3.1292
16 7 0.2076 -7.1400 4.5205
17 6 -0.9275 -7.8172 5.1523
18 1 -1.8885 -7.6877 4.6545
19 6 -0.9304 -7.9162 6.6791
20 6 -0.6590 -9.1612 5.8322
21 1 -1.4435 -9.9163 5.7818
22 6 0.7744 -9.6953 5.8003
23 6 0.8106 -11.0738 6.4080
24 6 1.0356 -11.2260 7.7634
25 6 1.0645 -12.4903 8.3216
26 6 0.8777 -13.6029 7.5227
27 6 0.6573 -13.4510 6.1666
28 6 0.6242 -12.1864 5.6091
29 6 0.4987 -3.3186 2.4146
30 6 0.2265 -2.3400 1.2682
31 1 -0.4849 0.8401 -0.0004
32 1 2.7345 -3.5133 -0.7647
33 1 1.0420 -4.0621 -0.8496
34 1 2.9034 -4.2527 1.5637
35 1 2.3053 -5.6059 0.5729
36 1 -0.0270 -5.0411 1.2322
37 1 1.9446 -5.8250 3.2385
38 1 1.1105 -7.3184 4.8269
39 1 -0.0875 -7.4778 7.2134
40 1 -1.8934 -7.8518 7.1858
41 1 1.1210 -9.7440 4.7680
42 1 1.4228 -9.0297 6.3703
43 1 1.1859 -10.3569 8.3868
44 1 1.2363 -12.6090 9.3812
45 1 0.9035 -14.5909 7.9582
46 1 0.5117 -14.3202 5.5424
47 1 0.4523 -12.0677 4.5495
48 1 -0.3817 -3.3833 3.0540
49 1 1.3486 -2.9666 2.9994
50 1 0.0994 -1.3343 1.6687
51 1 -0.6772 -2.6386 0.7369
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000610350829.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:42
Heat of formation + Delta-G solvation = 14.823754 kcal
Electronic energy + Delta-G solvation = -28852.779489 eV
Core-core repulsion = 24945.031566 eV
Total energy + Delta-G solvation = -3907.747922 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.30956 -40.25468 -39.29416 -38.33749 -35.95032 -34.49019 -33.71053 -32.81488
-31.71297 -31.65872 -30.92279 -27.98095 -26.90610 -24.20435 -23.87391 -23.44296
-22.90626 -22.58699 -22.02057 -21.14720 -20.79473 -19.47678 -18.65879 -17.70822
-17.43014 -16.84481 -16.38929 -16.21784 -16.00973 -15.98424 -15.67967 -15.47375
-15.33755 -15.05526 -14.72637 -14.37583 -14.23705 -14.06543 -13.93020 -13.83916
-13.36457 -13.19955 -13.13719 -13.01824 -12.67408 -12.60562 -12.46973 -12.37216
-12.10590 -12.00771 -11.86294 -11.84655 -11.74715 -11.52351 -11.42730 -11.20703
-10.91936 -10.58364 -10.12973 -9.77089 -9.66861 -9.39966 -8.70238 -7.86450
-5.32917 0.49303 0.55160 1.47437 1.49218 1.60059 1.64253 2.10331
2.52392 2.89808 2.97349 3.22076 3.31533 3.61796 3.68426 3.89856
3.90857 4.03261 4.08927 4.11583 4.14027 4.24004 4.33854 4.36356
4.48031 4.49714 4.63767 4.68622 4.69642 4.71721 4.81945 4.88246
4.91398 4.95579 4.96203 5.08026 5.10579 5.15139 5.19441 5.23499
5.32003 5.33809 5.47423 5.58187 5.62010 5.63669 5.65547 5.68352
5.71127 5.77593 6.05112 6.18115 6.39762 7.13652 7.14968 7.63030
7.85442 8.38346 9.20779
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.028168 B = 0.001666 C = 0.001641
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 993.810751 B =16802.447332 C =17055.139837
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.939 5.939
2 C -0.055 4.055
3 Si 0.969 3.031
4 H -0.261 1.261
5 H -0.294 1.294
6 H -0.293 1.293
7 C -0.260 4.260
8 H 0.075 0.925
9 N -0.609 5.609
10 C 0.141 3.859
11 C -0.120 4.120
12 C 0.181 3.819
13 N -0.724 5.724
14 C 0.702 3.298
15 O -0.637 6.637
16 N -0.701 5.701
17 C 0.084 3.916
18 H 0.112 0.888
19 C -0.177 4.177
20 C -0.135 4.135
21 H 0.111 0.889
22 C -0.049 4.049
23 C -0.084 4.084
24 C -0.124 4.124
25 C -0.129 4.129
26 C -0.136 4.136
27 C -0.130 4.130
28 C -0.131 4.131
29 C -0.130 4.130
30 C 0.182 3.818
31 H 0.249 0.751
32 H 0.068 0.932
33 H 0.011 0.989
34 H 0.076 0.924
35 H 0.091 0.909
36 H 0.054 0.946
37 H 0.411 0.589
38 H 0.411 0.589
39 H 0.109 0.891
40 H 0.106 0.894
41 H 0.079 0.921
42 H 0.087 0.913
43 H 0.133 0.867
44 H 0.136 0.864
45 H 0.135 0.865
46 H 0.133 0.867
47 H 0.125 0.875
48 H 0.042 0.958
49 H 0.061 0.939
50 H 0.054 0.946
51 H -0.012 1.012
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.507 -27.569 18.045 33.407
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.585 5.585
2 C -0.250 4.250
3 Si 0.797 3.203
4 H -0.185 1.185
5 H -0.221 1.221
6 H -0.220 1.220
7 C -0.390 4.390
8 H 0.092 0.908
9 N -0.332 5.332
10 C 0.015 3.985
11 C -0.159 4.159
12 C 0.076 3.924
13 N -0.379 5.379
14 C 0.402 3.598
15 O -0.518 6.518
16 N -0.355 5.355
17 C -0.023 4.023
18 H 0.130 0.870
19 C -0.216 4.216
20 C -0.155 4.155
21 H 0.129 0.871
22 C -0.086 4.086
23 C -0.084 4.084
24 C -0.142 4.142
25 C -0.147 4.147
26 C -0.154 4.154
27 C -0.148 4.148
28 C -0.149 4.149
29 C -0.170 4.170
30 C 0.056 3.944
31 H 0.058 0.942
32 H 0.087 0.913
33 H 0.029 0.971
34 H 0.095 0.905
35 H 0.110 0.890
36 H 0.073 0.927
37 H 0.247 0.753
38 H 0.248 0.752
39 H 0.128 0.872
40 H 0.125 0.875
41 H 0.097 0.903
42 H 0.106 0.894
43 H 0.151 0.849
44 H 0.154 0.846
45 H 0.153 0.847
46 H 0.151 0.849
47 H 0.143 0.857
48 H 0.061 0.939
49 H 0.080 0.920
50 H 0.072 0.928
51 H 0.006 0.994
Dipole moment (debyes) X Y Z Total
from point charges 4.429 -27.232 17.653 32.754
hybrid contribution 0.385 1.030 0.005 1.099
sum 4.814 -26.202 17.658 31.961
Atomic orbital electron populations
1.70223 1.06943 1.25759 1.55621 1.25884 0.95983 1.01810 1.01336
0.85182 0.78824 0.79705 0.76579 1.18533 1.22113 1.21968 1.19617
0.93036 0.85779 1.40570 0.90768 1.44347 1.35652 1.02691 1.50532
1.21051 0.97908 0.85599 0.93976 1.22132 0.96168 1.00372 0.97277
1.20498 0.98403 0.86902 0.86611 1.45074 1.08659 1.45935 1.38182
1.16114 0.84559 0.79149 0.80022 1.90906 1.23641 1.69503 1.67781
1.44207 1.10094 1.45041 1.36141 1.21463 0.90790 0.96899 0.93151
0.86985 1.23694 1.04636 1.00393 0.92890 1.22777 0.98695 0.90755
1.03251 0.87129 1.20137 0.94265 0.92747 1.01465 1.19904 0.99401
0.95089 0.94041 1.21292 1.00205 0.98074 0.94631 1.21445 0.99800
0.92658 1.00785 1.21444 1.00190 0.99658 0.94107 1.21416 0.99908
0.97704 0.95793 1.21292 1.00701 0.92635 1.00319 1.22308 1.00195
0.96048 0.98453 1.20460 0.87843 0.97305 0.88824 0.94223 0.91308
0.97083 0.90524 0.89034 0.92741 0.75254 0.75151 0.87234 0.87532
0.90255 0.89434 0.84922 0.84579 0.84679 0.84901 0.85673 0.93902
0.92024 0.92761 0.99376
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.25 11.20 21.65 0.24 -57.01 16
2 C -0.06 -3.12 4.92 84.86 0.42 -2.70 16
3 Si 0.97 45.10 29.59 68.60 2.03 47.13 16
4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16
5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16
6 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16
7 C -0.26 -14.23 9.58 84.03 0.81 -13.43 16
8 H 0.07 3.87 7.89 -2.91 -0.02 3.85 16
9 N -0.61 -30.76 2.99 -699.15 -2.09 -32.85 16
10 C 0.14 5.65 6.52 86.36 0.56 6.21 16
11 C -0.12 -3.65 5.55 30.67 0.17 -3.48 16
12 C 0.18 6.20 2.42 45.02 0.11 6.31 16
13 N -0.72 -18.82 5.08 -457.70 -2.33 -21.14 16
14 C 0.70 20.53 8.53 179.05 1.53 22.06 16
15 O -0.64 -25.65 15.57 -3.97 -0.06 -25.71 16
16 N -0.70 -13.70 5.35 -457.83 -2.45 -16.15 16
17 C 0.08 1.59 6.41 44.99 0.29 1.88 16
18 H 0.11 2.77 7.40 -2.39 -0.02 2.75 16
19 C -0.18 -2.38 10.10 30.59 0.31 -2.07 16
20 C -0.14 -1.78 5.72 -10.80 -0.06 -1.84 16
21 H 0.11 1.52 8.07 -2.39 -0.02 1.50 16
22 C -0.05 -0.53 4.54 29.85 0.14 -0.39 16
23 C -0.08 -1.08 5.09 -19.87 -0.10 -1.18 16
24 C -0.12 -1.49 9.70 22.27 0.22 -1.27 16
25 C -0.13 -1.48 10.05 22.27 0.22 -1.25 16
26 C -0.14 -1.57 10.05 22.27 0.22 -1.35 16
27 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16
28 C -0.13 -1.77 9.70 22.27 0.22 -1.55 16
29 C -0.13 -5.30 5.65 30.66 0.17 -5.12 16
30 C 0.18 9.34 5.30 86.35 0.46 9.80 16
31 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16
32 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16
33 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16
34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16
35 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16
36 H 0.05 2.20 7.58 -2.38 -0.02 2.18 16
37 H 0.41 7.37 8.62 -92.71 -0.80 6.57 16
38 H 0.41 5.17 7.85 -92.71 -0.73 4.44 16
39 H 0.11 1.22 8.03 -2.38 -0.02 1.20 16
40 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16
41 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16
42 H 0.09 0.71 7.73 -2.38 -0.02 0.69 16
43 H 0.13 1.19 8.06 -2.91 -0.02 1.16 16
44 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16
45 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16
46 H 0.13 1.20 8.06 -2.91 -0.02 1.17 16
47 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16
48 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16
49 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16
50 H 0.05 3.13 6.06 -2.39 -0.01 3.12 16
51 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16
Total: -1.00 -74.70 411.78 0.64 -74.06
By element:
Atomic # 1 Polarization: 23.05 SS G_CDS: -0.60 Total: 22.46 kcal
Atomic # 6 Polarization: 3.32 SS G_CDS: 5.90 Total: 9.22 kcal
Atomic # 7 Polarization: -120.53 SS G_CDS: -6.62 Total: -127.15 kcal
Atomic # 8 Polarization: -25.65 SS G_CDS: -0.06 Total: -25.71 kcal
Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal
Total: -74.70 0.64 -74.06 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610350829.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.886 kcal
(2) G-P(sol) polarization free energy of solvation -74.705 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.181 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.062 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.824 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds