Wall clock time and date at job start Sat Apr 11 2020 06:59:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13596 * 1
3 3 C 1.47200 * 179.97438 * 2 1
4 4 C 1.52992 * 109.47388 * 344.43374 * 3 2 1
5 5 N 1.46897 * 109.47291 * 179.71325 * 4 3 2
6 6 C 1.46901 * 111.00308 * 288.19399 * 5 4 3
7 7 C 1.50701 * 109.47297 * 160.34939 * 6 5 4
8 8 H 1.08003 * 119.99822 * 4.64983 * 7 6 5
9 9 C 1.37875 * 120.00226 * 184.64390 * 7 6 5
10 10 N 1.31510 * 119.99847 * 0.02562 * 9 7 6
11 11 Si 1.86795 * 120.00232 * 179.97438 * 9 7 6
12 12 H 1.48511 * 109.47106 * 90.00374 * 11 9 7
13 13 H 1.48491 * 109.47520 * 210.00275 * 11 9 7
14 14 H 1.48501 * 109.47158 * 330.00690 * 11 9 7
15 15 C 1.46903 * 111.00043 * 164.23955 * 5 4 3
16 16 C 1.50702 * 109.46955 * 293.95620 * 15 5 4
17 17 C 1.38291 * 119.92205 * 269.72425 * 16 15 5
18 18 C 1.38100 * 120.06856 * 179.72949 * 17 16 15
19 19 C 1.38915 * 119.92534 * 0.54684 * 18 17 16
20 20 N 1.39680 * 120.07373 * 179.70757 * 19 18 17
21 21 C 1.46850 * 111.00015 * 124.23126 * 20 19 18
22 22 C 1.53035 * 109.52164 * 174.15990 * 21 20 19
23 23 C 1.53122 * 109.27823 * 59.18047 * 22 21 20
24 24 O 1.42898 * 109.52158 * 182.43852 * 23 22 21
25 25 C 1.53122 * 109.16220 * 302.34126 * 23 22 21
26 26 C 1.46846 * 111.00058 * 0.02562 * 20 19 18
27 27 C 1.38902 * 119.85338 * 359.72669 * 19 18 17
28 28 C 1.38106 * 119.92602 * 0.02562 * 27 19 18
29 29 H 1.08999 * 109.47126 * 224.43158 * 3 2 1
30 30 H 1.09002 * 109.46726 * 104.43918 * 3 2 1
31 31 H 1.09002 * 109.47278 * 59.71881 * 4 3 2
32 32 H 1.08996 * 109.47279 * 299.72006 * 4 3 2
33 33 H 1.08995 * 109.47184 * 280.34946 * 6 5 4
34 34 H 1.09002 * 109.47169 * 40.35679 * 6 5 4
35 35 H 0.97001 * 119.99936 * 179.97438 * 10 9 7
36 36 H 1.08998 * 109.47132 * 53.95557 * 15 5 4
37 37 H 1.09007 * 109.47131 * 173.95894 * 15 5 4
38 38 H 1.07994 * 119.96281 * 359.97438 * 17 16 15
39 39 H 1.08003 * 120.03906 * 180.27490 * 18 17 16
40 40 H 1.09002 * 109.46070 * 294.17698 * 21 20 19
41 41 H 1.08999 * 109.46041 * 54.14399 * 21 20 19
42 42 H 1.09004 * 109.50568 * 299.23997 * 22 21 20
43 43 H 1.08994 * 109.53573 * 179.13823 * 22 21 20
44 44 H 1.08996 * 109.57384 * 62.27950 * 23 22 21
45 45 H 0.96701 * 114.00211 * 299.68434 * 24 23 22
46 46 H 1.08992 * 109.50490 * 297.72216 * 25 23 22
47 47 H 1.09001 * 109.53723 * 177.61155 * 25 23 22
48 48 H 1.08998 * 109.46386 * 305.86339 * 26 20 19
49 49 H 1.09009 * 109.46081 * 65.83632 * 26 20 19
50 50 H 1.07994 * 120.04201 * 180.02562 * 27 19 18
51 51 H 1.07998 * 119.96828 * 180.02562 * 28 27 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1186 -1.3886 0.3871
5 7 4.5876 -1.3898 0.3804
6 6 5.1079 -1.3296 -0.9921
7 6 6.5376 -0.8539 -0.9669
8 1 7.0362 -0.6917 -0.0226
9 6 7.2093 -0.6259 -2.1492
10 7 6.6021 -0.8231 -3.2989
11 14 8.9812 -0.0356 -2.1180
12 1 9.8934 -1.2075 -2.1145
13 1 9.2475 0.7952 -3.3195
14 1 9.2116 0.7746 -0.8950
15 6 5.1163 -2.5605 1.0930
16 6 4.7645 -2.4599 2.5549
17 6 5.6301 -1.8310 3.4311
18 6 5.3081 -1.7322 4.7704
19 6 4.1185 -2.2753 5.2390
20 7 3.7926 -2.1825 6.5941
21 6 2.4847 -1.5406 6.7780
22 6 2.0958 -1.5869 8.2574
23 6 3.1619 -0.8616 9.0833
24 8 2.8332 -0.9507 10.4711
25 6 4.5225 -1.5192 8.8365
26 6 4.8409 -1.4748 7.3402
27 6 3.2540 -2.9113 4.3572
28 6 3.5797 -3.0022 3.0182
29 1 2.9710 0.7347 0.7194
30 1 2.9711 0.2571 -0.9952
31 1 2.7515 -2.1234 -0.3295
32 1 2.7596 -1.6429 1.3843
33 1 5.0629 -2.3216 -1.4415
34 1 4.5049 -0.6369 -1.5792
35 1 7.0745 -0.6624 -4.1307
36 1 4.6794 -3.4678 0.6757
37 1 6.2002 -2.5947 0.9817
38 1 6.5570 -1.4133 3.0668
39 1 5.9824 -1.2370 5.4534
40 1 2.5400 -0.5028 6.4493
41 1 1.7350 -2.0686 6.1887
42 1 2.0269 -2.6248 8.5833
43 1 1.1322 -1.0971 8.3965
44 1 3.2042 0.1860 8.7855
45 1 1.9819 -0.5531 10.7000
46 1 4.4917 -2.5560 9.1713
47 1 5.2930 -0.9811 9.3886
48 1 5.8026 -1.9548 7.1592
49 1 4.8849 -0.4372 7.0090
50 1 2.3283 -3.3343 4.7182
51 1 2.9079 -3.4962 2.3319
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000877138700.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:57
Heat of formation + Delta-G solvation = 10.589784 kcal
Electronic energy + Delta-G solvation = -29581.648728 eV
Core-core repulsion = 25673.717207 eV
Total energy + Delta-G solvation = -3907.931521 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.56862 -38.81440 -37.49131 -36.53131 -35.80853 -32.95237 -32.62075 -31.83176
-31.13776 -30.45162 -29.31720 -26.84932 -25.27718 -24.24540 -23.71142 -23.04945
-21.78339 -21.09015 -20.16767 -19.81888 -17.86184 -17.41676 -17.25224 -16.53949
-15.79885 -15.45867 -15.22094 -15.08790 -14.91758 -14.68086 -14.55545 -14.23864
-13.98514 -13.96586 -13.74920 -13.45659 -13.06122 -12.97618 -12.72387 -12.53671
-12.39980 -12.13729 -12.10372 -11.99204 -11.82590 -11.62737 -11.57299 -11.36239
-11.11933 -10.93317 -10.86220 -10.80245 -10.69809 -10.56019 -10.34626 -10.22625
-9.81278 -9.63418 -9.29630 -8.74861 -8.48668 -7.74410 -7.40487 -6.08596
-4.09958 1.48611 1.58433 2.96142 3.01756 3.28267 3.35692 3.38551
3.45046 3.74600 3.92746 4.22024 4.35160 4.37235 4.40224 4.67402
4.76088 4.89933 4.97430 5.03399 5.06846 5.11393 5.19497 5.26638
5.28930 5.35371 5.36097 5.39043 5.46085 5.52425 5.53617 5.61687
5.63531 5.73147 5.82466 5.86615 5.92501 5.95753 6.18529 6.21576
6.27732 6.33005 6.39699 6.53261 6.83383 6.90993 6.93389 7.11873
7.21809 7.22450 7.33485 7.72697 7.77694 7.97011 8.07252 8.42073
8.97334 9.54737 11.01809
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.011486 B = 0.002558 C = 0.002231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2437.142019 B =10944.112621 C =12544.760875
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.461 5.461
2 C 0.221 3.779
3 C -0.027 4.027
4 C 0.055 3.945
5 N -0.527 5.527
6 C 0.188 3.812
7 C -0.505 4.505
8 H 0.064 0.936
9 C 0.056 3.944
10 N -0.898 5.898
11 Si 0.895 3.105
12 H -0.282 1.282
13 H -0.288 1.288
14 H -0.273 1.273
15 C 0.101 3.899
16 C -0.084 4.084
17 C -0.070 4.070
18 C -0.170 4.170
19 C 0.098 3.902
20 N -0.489 5.489
21 C 0.060 3.940
22 C -0.151 4.151
23 C 0.102 3.898
24 O -0.567 6.567
25 C -0.111 4.111
26 C 0.054 3.946
27 C -0.141 4.141
28 C -0.095 4.095
29 H 0.114 0.886
30 H 0.116 0.884
31 H 0.032 0.968
32 H 0.073 0.927
33 H -0.008 1.008
34 H 0.038 0.962
35 H 0.262 0.738
36 H 0.031 0.969
37 H 0.093 0.907
38 H 0.127 0.873
39 H 0.122 0.878
40 H 0.044 0.956
41 H 0.085 0.915
42 H 0.081 0.919
43 H 0.072 0.928
44 H 0.054 0.946
45 H 0.377 0.623
46 H 0.080 0.920
47 H 0.077 0.923
48 H 0.091 0.909
49 H 0.048 0.952
50 H 0.118 0.882
51 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.071 -1.195 21.552 22.423
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.139 5.139
2 C -0.097 4.097
3 C -0.068 4.068
4 C -0.075 4.075
5 N -0.251 5.251
6 C 0.063 3.937
7 C -0.544 4.544
8 H 0.082 0.918
9 C -0.145 4.145
10 N -0.538 5.538
11 Si 0.723 3.277
12 H -0.208 1.208
13 H -0.214 1.214
14 H -0.198 1.198
15 C -0.026 4.026
16 C -0.086 4.086
17 C -0.089 4.089
18 C -0.191 4.191
19 C 0.001 3.999
20 N -0.205 5.205
21 C -0.066 4.066
22 C -0.189 4.189
23 C 0.043 3.957
24 O -0.373 6.373
25 C -0.149 4.149
26 C -0.073 4.073
27 C -0.161 4.161
28 C -0.114 4.114
29 H 0.132 0.868
30 H 0.134 0.866
31 H 0.050 0.950
32 H 0.092 0.908
33 H 0.010 0.990
34 H 0.056 0.944
35 H 0.071 0.929
36 H 0.049 0.951
37 H 0.111 0.889
38 H 0.145 0.855
39 H 0.140 0.860
40 H 0.062 0.938
41 H 0.103 0.897
42 H 0.100 0.900
43 H 0.090 0.910
44 H 0.072 0.928
45 H 0.224 0.776
46 H 0.098 0.902
47 H 0.095 0.905
48 H 0.109 0.891
49 H 0.066 0.934
50 H 0.136 0.864
51 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -7.054 -1.519 21.862 23.022
hybrid contribution 0.619 0.596 -0.967 1.294
sum -6.434 -0.922 20.896 21.883
Atomic orbital electron populations
1.81147 1.13249 1.09350 1.10130 1.29488 0.95504 0.92484 0.92195
1.19383 0.79988 1.00970 1.06416 1.21984 0.91099 0.93709 1.00715
1.62103 1.03622 1.39138 1.20222 1.19872 0.95973 0.96045 0.81788
1.21117 0.96466 1.44266 0.92502 0.91786 1.24968 0.98324 0.95759
0.95474 1.69940 1.37062 1.49449 0.97323 0.86539 0.84828 0.78726
0.77569 1.20802 1.21357 1.19750 1.20956 1.01799 0.91601 0.88267
1.19981 0.94251 0.98146 0.96180 1.20960 0.99446 0.96455 0.92009
1.21255 0.98290 1.03158 0.96401 1.18785 0.95576 0.98080 0.87481
1.59100 1.03409 1.50461 1.07539 1.22152 0.90182 0.97771 0.96446
1.22362 0.98697 1.02880 0.94921 1.21885 0.94923 0.97895 0.80974
1.86521 1.42558 1.83362 1.24830 1.21569 0.95584 1.02564 0.95167
1.22228 0.95356 0.97232 0.92518 1.20632 1.00095 1.02439 0.92977
1.20939 0.96427 0.99268 0.94766 0.86842 0.86570 0.94985 0.90840
0.98976 0.94382 0.92884 0.95083 0.88862 0.85525 0.86008 0.93754
0.89653 0.90031 0.90980 0.92835 0.77560 0.90165 0.90457 0.89120
0.93425 0.86430 0.86345
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.46 -7.77 18.54 42.15 0.78 -6.99 16
2 C 0.22 3.27 15.43 -20.76 -0.32 2.95 16
3 C -0.03 -0.38 5.77 -29.52 -0.17 -0.55 16
4 C 0.05 0.84 4.75 -3.83 -0.02 0.82 16
5 N -0.53 -9.52 4.37 -237.52 -1.04 -10.56 16
6 C 0.19 4.25 4.59 -4.97 -0.02 4.23 16
7 C -0.50 -12.76 8.61 -34.44 -0.30 -13.06 16
8 H 0.06 1.60 7.66 -52.48 -0.40 1.20 16
9 C 0.06 1.48 5.46 -17.82 -0.10 1.38 16
10 N -0.90 -25.00 13.29 55.43 0.74 -24.26 16
11 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16
12 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16
13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
15 C 0.10 1.68 4.94 -4.97 -0.02 1.66 16
16 C -0.08 -1.21 4.94 -104.58 -0.52 -1.73 16
17 C -0.07 -0.96 9.69 -39.61 -0.38 -1.34 16
18 C -0.17 -2.07 8.82 -39.38 -0.35 -2.42 16
19 C 0.10 1.16 5.64 -83.79 -0.47 0.68 16
20 N -0.49 -4.97 4.70 -171.14 -0.80 -5.78 16
21 C 0.06 0.52 5.26 -3.83 -0.02 0.50 16
22 C -0.15 -1.08 5.72 -26.65 -0.15 -1.23 16
23 C 0.10 0.77 3.54 -26.61 -0.09 0.67 16
24 O -0.57 -4.42 13.32 -35.23 -0.47 -4.89 16
25 C -0.11 -0.90 5.75 -26.65 -0.15 -1.05 16
26 C 0.05 0.47 4.15 -3.83 -0.02 0.45 16
27 C -0.14 -1.70 9.16 -39.38 -0.36 -2.06 16
28 C -0.09 -1.23 7.84 -39.61 -0.31 -1.54 16
29 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16
30 H 0.12 1.72 6.52 -51.93 -0.34 1.39 16
31 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16
32 H 0.07 1.03 5.14 -51.93 -0.27 0.76 16
33 H -0.01 -0.19 8.00 -51.93 -0.42 -0.60 16
34 H 0.04 0.90 6.23 -51.93 -0.32 0.58 16
35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16
36 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16
37 H 0.09 1.69 7.26 -51.93 -0.38 1.32 16
38 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16
39 H 0.12 1.26 5.81 -52.48 -0.30 0.96 16
40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
41 H 0.09 0.73 6.70 -51.93 -0.35 0.39 16
42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
45 H 0.38 1.38 9.09 45.56 0.41 1.79 16
46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
47 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
48 H 0.09 0.78 6.98 -51.93 -0.36 0.41 16
49 H 0.05 0.41 7.74 -51.92 -0.40 0.01 16
50 H 0.12 1.25 7.15 -52.49 -0.38 0.88 16
51 H 0.12 1.42 7.73 -52.49 -0.41 1.02 16
LS Contribution 406.61 15.07 6.13 6.13
Total: -1.00 -29.90 406.61 -10.73 -40.63
By element:
Atomic # 1 Polarization: 9.23 SS G_CDS: -7.26 Total: 1.97 kcal
Atomic # 6 Polarization: -7.83 SS G_CDS: -3.78 Total: -11.61 kcal
Atomic # 7 Polarization: -47.26 SS G_CDS: -0.33 Total: -47.58 kcal
Atomic # 8 Polarization: -4.42 SS G_CDS: -0.47 Total: -4.89 kcal
Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -29.90 -10.73 -40.63 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000877138700.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.221 kcal
(2) G-P(sol) polarization free energy of solvation -29.904 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.317 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds