Wall clock time and date at job start Sat Apr 11 2020 06:59:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13596 * 1
3 3 C 1.47200 * 179.97438 * 2 1
4 4 C 1.52992 * 109.47388 * 344.43374 * 3 2 1
5 5 N 1.46897 * 109.47291 * 179.71325 * 4 3 2
6 6 C 1.46901 * 111.00308 * 288.19399 * 5 4 3
7 7 C 1.50701 * 109.47297 * 160.34939 * 6 5 4
8 8 H 1.08003 * 119.99822 * 4.64983 * 7 6 5
9 9 C 1.37875 * 120.00226 * 184.64390 * 7 6 5
10 10 N 1.31510 * 119.99847 * 0.02562 * 9 7 6
11 11 Si 1.86795 * 120.00232 * 179.97438 * 9 7 6
12 12 H 1.48511 * 109.47106 * 90.00374 * 11 9 7
13 13 H 1.48491 * 109.47520 * 210.00275 * 11 9 7
14 14 H 1.48501 * 109.47158 * 330.00690 * 11 9 7
15 15 C 1.46903 * 111.00043 * 164.23955 * 5 4 3
16 16 C 1.50702 * 109.46955 * 293.95620 * 15 5 4
17 17 C 1.38291 * 119.92205 * 269.72425 * 16 15 5
18 18 C 1.38100 * 120.06856 * 179.72949 * 17 16 15
19 19 C 1.38915 * 119.92534 * 0.54684 * 18 17 16
20 20 N 1.39680 * 120.07373 * 179.70757 * 19 18 17
21 21 C 1.46850 * 111.00015 * 124.23126 * 20 19 18
22 22 C 1.53035 * 109.52164 * 174.15990 * 21 20 19
23 23 C 1.53122 * 109.27823 * 59.18047 * 22 21 20
24 24 O 1.42898 * 109.52158 * 182.43852 * 23 22 21
25 25 C 1.53122 * 109.16220 * 302.34126 * 23 22 21
26 26 C 1.46846 * 111.00058 * 0.02562 * 20 19 18
27 27 C 1.38902 * 119.85338 * 359.72669 * 19 18 17
28 28 C 1.38106 * 119.92602 * 0.02562 * 27 19 18
29 29 H 1.08999 * 109.47126 * 224.43158 * 3 2 1
30 30 H 1.09002 * 109.46726 * 104.43918 * 3 2 1
31 31 H 1.09002 * 109.47278 * 59.71881 * 4 3 2
32 32 H 1.08996 * 109.47279 * 299.72006 * 4 3 2
33 33 H 1.08995 * 109.47184 * 280.34946 * 6 5 4
34 34 H 1.09002 * 109.47169 * 40.35679 * 6 5 4
35 35 H 0.97001 * 119.99936 * 179.97438 * 10 9 7
36 36 H 1.08998 * 109.47132 * 53.95557 * 15 5 4
37 37 H 1.09007 * 109.47131 * 173.95894 * 15 5 4
38 38 H 1.07994 * 119.96281 * 359.97438 * 17 16 15
39 39 H 1.08003 * 120.03906 * 180.27490 * 18 17 16
40 40 H 1.09002 * 109.46070 * 294.17698 * 21 20 19
41 41 H 1.08999 * 109.46041 * 54.14399 * 21 20 19
42 42 H 1.09004 * 109.50568 * 299.23997 * 22 21 20
43 43 H 1.08994 * 109.53573 * 179.13823 * 22 21 20
44 44 H 1.08996 * 109.57384 * 62.27950 * 23 22 21
45 45 H 0.96701 * 114.00211 * 299.68434 * 24 23 22
46 46 H 1.08992 * 109.50490 * 297.72216 * 25 23 22
47 47 H 1.09001 * 109.53723 * 177.61155 * 25 23 22
48 48 H 1.08998 * 109.46386 * 305.86339 * 26 20 19
49 49 H 1.09009 * 109.46081 * 65.83632 * 26 20 19
50 50 H 1.07994 * 120.04201 * 180.02562 * 27 19 18
51 51 H 1.07998 * 119.96828 * 180.02562 * 28 27 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1186 -1.3886 0.3871
5 7 4.5876 -1.3898 0.3804
6 6 5.1079 -1.3296 -0.9921
7 6 6.5376 -0.8539 -0.9669
8 1 7.0362 -0.6917 -0.0226
9 6 7.2093 -0.6259 -2.1492
10 7 6.6021 -0.8231 -3.2989
11 14 8.9812 -0.0356 -2.1180
12 1 9.8934 -1.2075 -2.1145
13 1 9.2475 0.7952 -3.3195
14 1 9.2116 0.7746 -0.8950
15 6 5.1163 -2.5605 1.0930
16 6 4.7645 -2.4599 2.5549
17 6 5.6301 -1.8310 3.4311
18 6 5.3081 -1.7322 4.7704
19 6 4.1185 -2.2753 5.2390
20 7 3.7926 -2.1825 6.5941
21 6 2.4847 -1.5406 6.7780
22 6 2.0958 -1.5869 8.2574
23 6 3.1619 -0.8616 9.0833
24 8 2.8332 -0.9507 10.4711
25 6 4.5225 -1.5192 8.8365
26 6 4.8409 -1.4748 7.3402
27 6 3.2540 -2.9113 4.3572
28 6 3.5797 -3.0022 3.0182
29 1 2.9710 0.7347 0.7194
30 1 2.9711 0.2571 -0.9952
31 1 2.7515 -2.1234 -0.3295
32 1 2.7596 -1.6429 1.3843
33 1 5.0629 -2.3216 -1.4415
34 1 4.5049 -0.6369 -1.5792
35 1 7.0745 -0.6624 -4.1307
36 1 4.6794 -3.4678 0.6757
37 1 6.2002 -2.5947 0.9817
38 1 6.5570 -1.4133 3.0668
39 1 5.9824 -1.2370 5.4534
40 1 2.5400 -0.5028 6.4493
41 1 1.7350 -2.0686 6.1887
42 1 2.0269 -2.6248 8.5833
43 1 1.1322 -1.0971 8.3965
44 1 3.2042 0.1860 8.7855
45 1 1.9819 -0.5531 10.7000
46 1 4.4917 -2.5560 9.1713
47 1 5.2930 -0.9811 9.3886
48 1 5.8026 -1.9548 7.1592
49 1 4.8849 -0.4372 7.0090
50 1 2.3283 -3.3343 4.7182
51 1 2.9079 -3.4962 2.3319
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000877138700.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:56
Heat of formation + Delta-G solvation = -8.146245 kcal
Electronic energy + Delta-G solvation = -29582.461184 eV
Core-core repulsion = 25673.717207 eV
Total energy + Delta-G solvation = -3908.743976 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.39957 -39.78278 -38.59128 -37.56221 -36.92449 -34.68292 -33.65795 -32.60013
-32.33199 -31.32294 -30.55608 -28.46292 -26.36125 -25.09200 -24.81178 -24.42134
-22.68162 -22.15704 -21.32334 -20.70382 -18.62605 -18.52603 -18.34233 -18.11496
-16.91750 -16.61238 -16.33357 -16.12684 -15.94358 -15.74793 -15.51681 -15.38026
-15.16892 -14.94228 -14.82315 -14.37598 -14.23761 -14.22717 -13.78648 -13.74544
-13.48264 -13.44091 -13.24361 -13.09549 -12.87363 -12.70433 -12.59726 -12.48564
-12.32326 -12.30643 -12.20893 -12.06730 -11.95243 -11.81518 -11.38553 -11.27439
-11.19929 -10.79153 -10.51715 -10.46827 -9.74087 -8.98467 -8.62596 -8.09902
-6.17001 0.48453 0.59035 1.47763 1.49515 1.59427 1.73192 1.79860
2.47701 2.63153 2.87747 3.04952 3.23910 3.25638 3.71004 3.74678
3.76494 3.97399 4.07777 4.09922 4.14728 4.16562 4.18680 4.26991
4.30154 4.44506 4.47651 4.56623 4.59469 4.63884 4.73590 4.77221
4.77930 4.83083 4.88340 4.92504 5.01908 5.08819 5.09976 5.13158
5.23366 5.29177 5.32975 5.35062 5.41388 5.50876 5.77828 5.89062
5.90701 6.09253 6.17998 6.38133 6.42949 6.57111 6.67928 6.87644
6.98667 7.51868 9.00060
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.011486 B = 0.002558 C = 0.002231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2437.142019 B =10944.112621 C =12544.760875
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.491 5.491
2 C 0.244 3.756
3 C -0.017 4.017
4 C 0.057 3.943
5 N -0.526 5.526
6 C 0.201 3.799
7 C -0.509 4.509
8 H 0.064 0.936
9 C 0.005 3.995
10 N -0.934 5.934
11 Si 0.957 3.043
12 H -0.279 1.279
13 H -0.289 1.289
14 H -0.263 1.263
15 C 0.107 3.893
16 C -0.099 4.099
17 C -0.079 4.079
18 C -0.172 4.172
19 C 0.103 3.897
20 N -0.495 5.495
21 C 0.059 3.941
22 C -0.143 4.143
23 C 0.103 3.897
24 O -0.583 6.583
25 C -0.109 4.109
26 C 0.054 3.946
27 C -0.143 4.143
28 C -0.095 4.095
29 H 0.132 0.868
30 H 0.108 0.892
31 H 0.027 0.973
32 H 0.092 0.908
33 H -0.037 1.037
34 H 0.027 0.973
35 H 0.261 0.739
36 H 0.029 0.971
37 H 0.071 0.929
38 H 0.120 0.880
39 H 0.139 0.861
40 H 0.045 0.955
41 H 0.087 0.913
42 H 0.071 0.929
43 H 0.092 0.908
44 H 0.061 0.939
45 H 0.395 0.605
46 H 0.067 0.933
47 H 0.083 0.917
48 H 0.091 0.909
49 H 0.053 0.947
50 H 0.134 0.866
51 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.422 -0.480 23.881 24.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.170 5.170
2 C -0.073 4.073
3 C -0.057 4.057
4 C -0.072 4.072
5 N -0.250 5.250
6 C 0.075 3.925
7 C -0.548 4.548
8 H 0.082 0.918
9 C -0.193 4.193
10 N -0.575 5.575
11 Si 0.783 3.217
12 H -0.205 1.205
13 H -0.215 1.215
14 H -0.187 1.187
15 C -0.021 4.021
16 C -0.100 4.100
17 C -0.098 4.098
18 C -0.192 4.192
19 C 0.005 3.995
20 N -0.211 5.211
21 C -0.067 4.067
22 C -0.181 4.181
23 C 0.044 3.956
24 O -0.392 6.392
25 C -0.147 4.147
26 C -0.073 4.073
27 C -0.163 4.163
28 C -0.114 4.114
29 H 0.150 0.850
30 H 0.126 0.874
31 H 0.045 0.955
32 H 0.110 0.890
33 H -0.019 1.019
34 H 0.045 0.955
35 H 0.070 0.930
36 H 0.048 0.952
37 H 0.090 0.910
38 H 0.138 0.862
39 H 0.157 0.843
40 H 0.063 0.937
41 H 0.105 0.895
42 H 0.089 0.911
43 H 0.111 0.889
44 H 0.079 0.921
45 H 0.244 0.756
46 H 0.086 0.914
47 H 0.102 0.898
48 H 0.109 0.891
49 H 0.071 0.929
50 H 0.151 0.849
51 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -7.424 -0.800 24.234 25.358
hybrid contribution 0.689 0.328 -1.559 1.735
sum -6.735 -0.471 22.675 23.659
Atomic orbital electron populations
1.81176 1.14124 1.10416 1.11253 1.29426 0.95247 0.91462 0.91149
1.19310 0.79332 1.00638 1.06434 1.22017 0.89152 0.94401 1.01663
1.62005 1.05421 1.40162 1.17367 1.19547 0.95051 0.93850 0.84045
1.21453 0.97727 1.43220 0.92361 0.91780 1.25743 1.02150 0.96167
0.95247 1.70058 1.38631 1.50979 0.97850 0.85567 0.80262 0.78239
0.77653 1.20522 1.21463 1.18742 1.20839 1.00374 0.90906 0.89965
1.19730 0.95512 1.00186 0.94566 1.20976 0.99247 0.96788 0.92802
1.21401 0.98824 1.03087 0.95903 1.18956 0.95187 0.97046 0.88301
1.59112 1.04488 1.51020 1.06476 1.22221 0.89316 0.97590 0.97549
1.22304 0.99613 1.02483 0.93654 1.21864 0.94510 0.98200 0.81035
1.86481 1.44054 1.83787 1.24853 1.21540 0.96506 1.02019 0.94659
1.22260 0.94981 0.97314 0.92742 1.20806 1.00745 1.02230 0.92542
1.20992 0.95916 0.98995 0.95476 0.84995 0.87408 0.95487 0.89027
1.01898 0.95524 0.93020 0.95235 0.91046 0.86197 0.84329 0.93698
0.89487 0.91052 0.88933 0.92063 0.75551 0.91392 0.89817 0.89117
0.92892 0.84851 0.85584
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.49 -16.03 18.54 20.01 0.37 -15.66 16
2 C 0.24 6.93 15.43 89.44 1.38 8.31 16
3 C -0.02 -0.45 5.77 28.79 0.17 -0.29 16
4 C 0.06 1.70 4.75 86.30 0.41 2.11 16
5 N -0.53 -19.09 4.37 -905.37 -3.96 -23.05 16
6 C 0.20 9.33 4.59 85.56 0.39 9.72 16
7 C -0.51 -26.08 8.61 25.60 0.22 -25.86 16
8 H 0.06 3.22 7.66 -2.91 -0.02 3.20 16
9 C 0.00 0.25 5.46 84.65 0.46 0.71 16
10 N -0.93 -52.98 13.29 21.45 0.28 -52.70 16
11 Si 0.96 41.98 29.54 68.60 2.03 44.00 16
12 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16
13 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16
14 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16
15 C 0.11 3.59 4.94 85.56 0.42 4.02 16
16 C -0.10 -2.77 4.94 -19.84 -0.10 -2.87 16
17 C -0.08 -2.11 9.69 22.25 0.22 -1.89 16
18 C -0.17 -3.89 8.82 22.40 0.20 -3.69 16
19 C 0.10 2.22 5.64 38.21 0.22 2.44 16
20 N -0.50 -8.98 4.70 -695.37 -3.27 -12.25 16
21 C 0.06 0.87 5.26 86.32 0.45 1.32 16
22 C -0.14 -1.67 5.72 30.65 0.18 -1.50 16
23 C 0.10 1.30 3.54 30.68 0.11 1.41 16
24 O -0.58 -7.79 13.32 -148.98 -1.99 -9.77 16
25 C -0.11 -1.57 5.75 30.65 0.18 -1.39 16
26 C 0.05 0.83 4.15 86.33 0.36 1.18 16
27 C -0.14 -3.14 9.16 22.40 0.21 -2.94 16
28 C -0.09 -2.31 7.84 22.25 0.17 -2.14 16
29 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16
30 H 0.11 3.17 6.52 -2.39 -0.02 3.15 16
31 H 0.03 0.84 8.05 -2.39 -0.02 0.82 16
32 H 0.09 2.42 5.14 -2.39 -0.01 2.41 16
33 H -0.04 -1.90 8.00 -2.39 -0.02 -1.91 16
34 H 0.03 1.30 6.23 -2.39 -0.01 1.28 16
35 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16
36 H 0.03 0.99 8.06 -2.39 -0.02 0.97 16
37 H 0.07 2.69 7.26 -2.38 -0.02 2.67 16
38 H 0.12 3.30 8.06 -2.91 -0.02 3.27 16
39 H 0.14 2.60 5.81 -2.91 -0.02 2.59 16
40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16
41 H 0.09 1.27 6.70 -2.39 -0.02 1.25 16
42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
43 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16
44 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
45 H 0.39 1.91 9.09 -74.06 -0.67 1.24 16
46 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
47 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16
48 H 0.09 1.38 6.98 -2.39 -0.02 1.37 16
49 H 0.05 0.78 7.74 -2.38 -0.02 0.76 16
50 H 0.13 2.49 7.15 -2.91 -0.02 2.47 16
51 H 0.13 2.83 7.73 -2.91 -0.02 2.81 16
Total: -1.00 -63.74 406.61 -0.63 -64.36
By element:
Atomic # 1 Polarization: 16.13 SS G_CDS: 0.27 Total: 16.40 kcal
Atomic # 6 Polarization: -16.97 SS G_CDS: 5.64 Total: -11.33 kcal
Atomic # 7 Polarization: -97.09 SS G_CDS: -6.57 Total: -103.66 kcal
Atomic # 8 Polarization: -7.79 SS G_CDS: -1.99 Total: -9.77 kcal
Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal
Total: -63.74 -0.63 -64.36 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000877138700.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.216 kcal
(2) G-P(sol) polarization free energy of solvation -63.736 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.519 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.363 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.146 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds