Wall clock time and date at job start Sat Apr 11 2020 06:59:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86796 * 120.00383 * 2 1
4 4 H 1.48495 * 109.47307 * 270.00638 * 3 2 1
5 5 H 1.48507 * 109.46796 * 30.00449 * 3 2 1
6 6 H 1.48492 * 109.47303 * 150.00085 * 3 2 1
7 7 C 1.38814 * 119.99598 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99758 * 179.97438 * 7 2 1
9 9 N 1.36930 * 120.00127 * 359.97438 * 7 2 1
10 10 C 1.46505 * 119.99944 * 180.02562 * 9 7 2
11 11 H 1.08996 * 109.47128 * 34.99936 * 10 9 7
12 12 C 1.53005 * 109.46639 * 274.99729 * 10 9 7
13 13 C 1.53007 * 109.47051 * 180.02562 * 12 10 9
14 14 C 1.53003 * 109.46838 * 59.99887 * 13 12 10
15 15 C 1.53005 * 109.47391 * 299.99905 * 14 13 12
16 16 H 1.09000 * 109.47015 * 180.02562 * 15 14 13
17 17 N 1.46493 * 109.47121 * 300.00416 * 15 14 13
18 18 C 1.34778 * 119.99848 * 274.99705 * 17 15 14
19 19 O 1.21276 * 120.00094 * 0.02562 * 18 17 15
20 20 C 1.50709 * 119.99808 * 180.02562 * 18 17 15
21 21 N 1.46896 * 109.46626 * 185.31825 * 20 18 17
22 22 C 1.47905 * 111.00075 * 75.69233 * 21 20 18
23 23 C 1.54606 * 102.63447 * 148.99299 * 22 21 20
24 24 C 1.51579 * 102.97627 * 334.30369 * 23 22 21
25 25 C 1.37554 * 131.88015 * 196.14274 * 24 23 22
26 26 C 1.38300 * 120.21619 * 179.79847 * 25 24 23
27 27 C 1.38311 * 119.87670 * 0.03083 * 26 25 24
28 28 C 1.37906 * 120.26715 * 0.12311 * 27 26 25
29 29 C 1.39401 * 120.20134 * 0.03842 * 28 27 26
30 30 C 1.52997 * 109.47390 * 155.00041 * 10 9 7
31 31 H 0.97002 * 119.99612 * 359.97438 * 1 2 3
32 32 H 0.97001 * 120.00600 * 0.02562 * 9 7 2
33 33 H 1.08998 * 109.47157 * 299.99586 * 12 10 9
34 34 H 1.08997 * 109.47444 * 60.00316 * 12 10 9
35 35 H 1.08994 * 109.47489 * 180.02562 * 13 12 10
36 36 H 1.09006 * 109.46938 * 300.00416 * 13 12 10
37 37 H 1.08999 * 109.46788 * 180.02562 * 14 13 12
38 38 H 1.08996 * 109.47042 * 60.00520 * 14 13 12
39 39 H 0.97005 * 120.00017 * 94.99918 * 17 15 14
40 40 H 1.08994 * 109.47366 * 65.31649 * 20 18 17
41 41 H 1.08999 * 109.46779 * 305.31403 * 20 18 17
42 42 H 1.09004 * 110.77946 * 30.70630 * 22 21 20
43 43 H 1.09010 * 110.77576 * 267.27599 * 22 21 20
44 44 H 1.09000 * 110.74189 * 92.72865 * 23 22 21
45 45 H 1.08998 * 110.74256 * 215.88379 * 23 22 21
46 46 H 1.08005 * 119.82916 * 359.80918 * 25 24 23
47 47 H 1.07991 * 120.06349 * 180.02562 * 26 25 24
48 48 H 1.08005 * 119.86259 * 180.10816 * 27 26 25
49 49 H 1.07996 * 119.89788 * 180.02562 * 28 27 26
50 50 H 1.09008 * 109.47445 * 59.99705 * 30 10 9
51 51 H 1.09000 * 109.47214 * 299.99932 * 30 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 2.4977 2.0464 -1.4000
5 1 1.4478 2.6526 0.7002
6 1 3.5478 1.4400 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0903 -1.2022 -0.0010
9 7 1.3255 -2.3880 -0.0005
10 6 2.0580 -3.6568 -0.0005
11 1 2.9686 -3.5506 0.5889
12 6 2.4217 -4.0356 -1.4376
13 6 3.1862 -5.3610 -1.4378
14 6 2.3084 -6.4560 -0.8283
15 6 1.9446 -6.0773 0.6088
16 1 1.3197 -6.8576 1.0431
17 7 3.1686 -5.9351 1.4010
18 6 3.7346 -7.0194 1.9672
19 8 3.2309 -8.1127 1.8203
20 6 4.9935 -6.8730 2.7827
21 7 5.4767 -8.2021 3.1800
22 6 6.1205 -8.8940 2.0422
23 6 7.1919 -9.7646 2.7383
24 6 7.4634 -9.0076 4.0232
25 6 8.4920 -9.0826 4.9333
26 6 8.5008 -8.2577 6.0433
27 6 7.4714 -7.3548 6.2389
28 6 6.4348 -7.2756 5.3328
29 6 6.4170 -8.1060 4.2133
30 6 1.1808 -4.7522 0.6091
31 1 -0.4850 0.8401 0.0004
32 1 0.3555 -2.3881 -0.0005
33 1 1.5110 -4.1419 -2.0270
34 1 3.0467 -3.2553 -1.8720
35 1 3.4457 -5.6307 -2.4615
36 1 4.0969 -5.2552 -0.8482
37 1 2.8531 -7.4001 -0.8280
38 1 1.3977 -6.5618 -1.4178
39 1 3.5717 -5.0606 1.5182
40 1 4.7826 -6.2818 3.6737
41 1 5.7564 -6.3723 2.1865
42 1 6.5850 -8.1764 1.3659
43 1 5.4008 -9.5174 1.5115
44 1 6.8018 -10.7598 2.9515
45 1 8.0937 -9.8272 2.1293
46 1 9.2951 -9.7883 4.7795
47 1 9.3098 -8.3183 6.7561
48 1 7.4793 -6.7095 7.1049
49 1 5.6343 -6.5682 5.4912
50 1 0.2700 -4.8584 0.0196
51 1 0.9216 -4.4823 1.6328
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981532628.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:32
Heat of formation + Delta-G solvation = 7.739902 kcal
Electronic energy + Delta-G solvation = -29954.181818 eV
Core-core repulsion = 26046.126717 eV
Total energy + Delta-G solvation = -3908.055101 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.12858 -39.90671 -38.02808 -36.71511 -34.47825 -33.28188 -32.93220 -31.19724
-30.51277 -29.56695 -29.14075 -27.93006 -26.62289 -23.77320 -23.25015 -22.28730
-21.80676 -21.54801 -21.03473 -20.50110 -18.84501 -17.56505 -17.25816 -16.79671
-16.11055 -16.05042 -15.65174 -15.32473 -15.18795 -15.03134 -14.46077 -14.19181
-13.97738 -13.72488 -13.62563 -13.43827 -13.14402 -13.08783 -12.97426 -12.49456
-12.37127 -12.26028 -12.06921 -11.89508 -11.76846 -11.74026 -11.53919 -11.11409
-11.04111 -10.91581 -10.81120 -10.45186 -10.40978 -10.23486 -10.20033 -9.78039
-9.62353 -9.55905 -9.07246 -8.96948 -8.85896 -7.96013 -7.01277 -5.81614
-3.10699 1.09052 1.14044 2.64771 2.94742 3.39239 3.43552 3.44363
3.46255 3.66355 4.23254 4.34081 4.52715 4.62927 4.70865 4.77206
4.83210 4.91148 4.98997 5.05556 5.07670 5.14690 5.15786 5.17880
5.25448 5.44735 5.46150 5.55083 5.57043 5.65187 5.65993 5.71974
5.73744 5.83915 5.94548 6.01905 6.03073 6.07741 6.18379 6.22590
6.25663 6.29058 6.41744 6.46136 6.53229 6.60148 6.66760 6.68053
6.90046 6.94260 7.04764 7.58729 7.63925 8.28157 8.36751 9.47980
10.05486 10.39827 11.40912
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.012798 B = 0.002413 C = 0.002149
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2187.337752 B =11598.629564 C =13026.213324
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C -0.013 4.013
3 Si 0.905 3.095
4 H -0.290 1.290
5 H -0.291 1.291
6 H -0.282 1.282
7 C -0.239 4.239
8 H 0.069 0.931
9 N -0.725 5.725
10 C 0.181 3.819
11 H 0.041 0.959
12 C -0.137 4.137
13 C -0.114 4.114
14 C -0.127 4.127
15 C 0.154 3.846
16 H 0.084 0.916
17 N -0.718 5.718
18 C 0.513 3.487
19 O -0.527 6.527
20 C 0.025 3.975
21 N -0.453 5.453
22 C 0.050 3.950
23 C -0.084 4.084
24 C -0.142 4.142
25 C -0.080 4.080
26 C -0.148 4.148
27 C -0.092 4.092
28 C -0.141 4.141
29 C 0.099 3.901
30 C -0.134 4.134
31 H 0.255 0.745
32 H 0.384 0.616
33 H 0.056 0.944
34 H 0.060 0.940
35 H 0.052 0.948
36 H 0.054 0.946
37 H 0.059 0.941
38 H 0.070 0.930
39 H 0.402 0.598
40 H 0.110 0.890
41 H 0.077 0.923
42 H 0.060 0.940
43 H 0.103 0.897
44 H 0.088 0.912
45 H 0.081 0.919
46 H 0.120 0.880
47 H 0.123 0.877
48 H 0.125 0.875
49 H 0.122 0.878
50 H 0.076 0.924
51 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.490 -18.848 6.975 25.374
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.209 4.209
3 Si 0.737 3.263
4 H -0.217 1.217
5 H -0.218 1.218
6 H -0.208 1.208
7 C -0.371 4.371
8 H 0.087 0.913
9 N -0.365 5.365
10 C 0.071 3.929
11 H 0.059 0.941
12 C -0.178 4.178
13 C -0.152 4.152
14 C -0.165 4.165
15 C 0.049 3.951
16 H 0.102 0.898
17 N -0.372 5.372
18 C 0.298 3.702
19 O -0.402 6.402
20 C -0.104 4.104
21 N -0.166 5.166
22 C -0.076 4.076
23 C -0.121 4.121
24 C -0.145 4.145
25 C -0.099 4.099
26 C -0.167 4.167
27 C -0.111 4.111
28 C -0.162 4.162
29 C 0.000 4.000
30 C -0.172 4.172
31 H 0.065 0.935
32 H 0.218 0.782
33 H 0.075 0.925
34 H 0.079 0.921
35 H 0.071 0.929
36 H 0.072 0.928
37 H 0.078 0.922
38 H 0.088 0.912
39 H 0.238 0.762
40 H 0.128 0.872
41 H 0.095 0.905
42 H 0.078 0.922
43 H 0.121 0.879
44 H 0.106 0.894
45 H 0.100 0.900
46 H 0.138 0.862
47 H 0.141 0.859
48 H 0.143 0.857
49 H 0.140 0.860
50 H 0.095 0.905
51 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 14.698 -19.750 6.963 25.585
hybrid contribution 0.800 1.890 -0.214 2.064
sum 15.498 -17.860 6.749 24.591
Atomic orbital electron populations
1.69660 1.05104 1.25687 1.57536 1.24746 0.95504 0.97694 1.02977
0.86217 0.78644 0.83957 0.77520 1.21747 1.21778 1.20785 1.19203
0.90900 0.84109 1.42850 0.91268 1.42425 1.05803 0.99695 1.88586
1.20137 0.93878 0.85981 0.92889 0.94124 1.22292 0.99800 0.95151
1.00512 1.21496 0.98415 0.95674 0.99663 1.21891 1.00556 0.98479
0.95591 1.20925 0.85128 0.98326 0.90741 0.89834 1.46190 1.28242
1.10301 1.52467 1.20291 0.85550 0.84767 0.79614 1.90687 1.63367
1.25872 1.60309 1.22293 0.96347 0.90604 1.01175 1.60034 1.32324
1.17026 1.07195 1.23350 0.95516 0.97025 0.91695 1.21308 0.98763
0.99002 0.93023 1.20518 0.95202 1.00144 0.98623 1.20274 0.97246
0.98859 0.93492 1.20986 0.99628 0.97762 0.98298 1.20895 0.93613
0.98182 0.98389 1.20505 1.00319 1.00773 0.94615 1.19810 0.89820
0.96151 0.94183 1.22121 0.99296 0.93582 1.02241 0.93483 0.78238
0.92548 0.92104 0.92908 0.92760 0.92183 0.91170 0.76164 0.87220
0.90490 0.92222 0.87856 0.89376 0.90044 0.86202 0.85890 0.85655
0.85977 0.90542 0.91224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16
2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16
3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16
4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
7 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16
8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16
9 N -0.72 -17.16 5.12 -53.42 -0.27 -17.43 16
10 C 0.18 3.26 2.60 -67.93 -0.18 3.08 16
11 H 0.04 0.72 6.44 -51.93 -0.33 0.39 16
12 C -0.14 -2.29 5.50 -26.73 -0.15 -2.43 16
13 C -0.11 -1.53 5.77 -26.73 -0.15 -1.68 16
14 C -0.13 -1.64 5.60 -26.73 -0.15 -1.79 16
15 C 0.15 2.06 2.78 -67.96 -0.19 1.87 16
16 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16
17 N -0.72 -8.83 4.23 -53.83 -0.23 -9.05 16
18 C 0.51 6.59 7.60 -10.98 -0.08 6.51 16
19 O -0.53 -8.52 15.43 5.56 0.09 -8.43 16
20 C 0.03 0.26 5.31 -4.97 -0.03 0.24 16
21 N -0.45 -5.20 4.58 -170.23 -0.78 -5.98 16
22 C 0.05 0.49 6.27 -2.43 -0.02 0.48 16
23 C -0.08 -0.71 7.02 -26.61 -0.19 -0.89 16
24 C -0.14 -1.40 6.25 -104.00 -0.65 -2.05 16
25 C -0.08 -0.69 10.01 -39.81 -0.40 -1.08 16
26 C -0.15 -1.19 10.06 -39.53 -0.40 -1.59 16
27 C -0.09 -0.78 10.02 -39.68 -0.40 -1.18 16
28 C -0.14 -1.39 9.44 -39.27 -0.37 -1.76 16
29 C 0.10 1.08 5.97 -83.23 -0.50 0.59 16
30 C -0.13 -2.04 5.07 -26.76 -0.14 -2.18 16
31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
32 H 0.38 9.80 7.80 -40.82 -0.32 9.48 16
33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16
36 H 0.05 0.70 7.60 -51.93 -0.39 0.31 16
37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
39 H 0.40 4.62 6.87 -40.82 -0.28 4.34 16
40 H 0.11 1.02 6.63 -51.93 -0.34 0.67 16
41 H 0.08 0.68 7.68 -51.93 -0.40 0.28 16
42 H 0.06 0.53 7.58 -51.93 -0.39 0.14 16
43 H 0.10 1.11 7.82 -51.92 -0.41 0.71 16
44 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
45 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
46 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16
47 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16
48 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16
49 H 0.12 1.07 7.11 -52.49 -0.37 0.70 16
50 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16
51 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
LS Contribution 400.68 15.07 6.04 6.04
Total: -1.00 -31.91 400.68 -11.93 -43.84
By element:
Atomic # 1 Polarization: 20.10 SS G_CDS: -8.26 Total: 11.84 kcal
Atomic # 6 Polarization: -6.63 SS G_CDS: -4.22 Total: -10.85 kcal
Atomic # 7 Polarization: -58.70 SS G_CDS: -0.56 Total: -59.25 kcal
Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -31.91 -11.93 -43.84 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981532628.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.583 kcal
(2) G-P(sol) polarization free energy of solvation -31.910 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.673 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.933 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.740 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds