Wall clock time and date at job start Sat Apr 11 2020 06:59:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86796 * 120.00383 * 2 1
4 4 H 1.48495 * 109.47307 * 270.00638 * 3 2 1
5 5 H 1.48507 * 109.46796 * 30.00449 * 3 2 1
6 6 H 1.48492 * 109.47303 * 150.00085 * 3 2 1
7 7 C 1.38814 * 119.99598 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99758 * 179.97438 * 7 2 1
9 9 N 1.36930 * 120.00127 * 359.97438 * 7 2 1
10 10 C 1.46505 * 119.99944 * 180.02562 * 9 7 2
11 11 H 1.08996 * 109.47128 * 34.99936 * 10 9 7
12 12 C 1.53005 * 109.46639 * 274.99729 * 10 9 7
13 13 C 1.53007 * 109.47051 * 180.02562 * 12 10 9
14 14 C 1.53003 * 109.46838 * 59.99887 * 13 12 10
15 15 C 1.53005 * 109.47391 * 299.99905 * 14 13 12
16 16 H 1.09000 * 109.47015 * 180.02562 * 15 14 13
17 17 N 1.46493 * 109.47121 * 300.00416 * 15 14 13
18 18 C 1.34778 * 119.99848 * 274.99705 * 17 15 14
19 19 O 1.21276 * 120.00094 * 0.02562 * 18 17 15
20 20 C 1.50709 * 119.99808 * 180.02562 * 18 17 15
21 21 N 1.46896 * 109.46626 * 185.31825 * 20 18 17
22 22 C 1.47905 * 111.00075 * 75.69233 * 21 20 18
23 23 C 1.54606 * 102.63447 * 148.99299 * 22 21 20
24 24 C 1.51579 * 102.97627 * 334.30369 * 23 22 21
25 25 C 1.37554 * 131.88015 * 196.14274 * 24 23 22
26 26 C 1.38300 * 120.21619 * 179.79847 * 25 24 23
27 27 C 1.38311 * 119.87670 * 0.03083 * 26 25 24
28 28 C 1.37906 * 120.26715 * 0.12311 * 27 26 25
29 29 C 1.39401 * 120.20134 * 0.03842 * 28 27 26
30 30 C 1.52997 * 109.47390 * 155.00041 * 10 9 7
31 31 H 0.97002 * 119.99612 * 359.97438 * 1 2 3
32 32 H 0.97001 * 120.00600 * 0.02562 * 9 7 2
33 33 H 1.08998 * 109.47157 * 299.99586 * 12 10 9
34 34 H 1.08997 * 109.47444 * 60.00316 * 12 10 9
35 35 H 1.08994 * 109.47489 * 180.02562 * 13 12 10
36 36 H 1.09006 * 109.46938 * 300.00416 * 13 12 10
37 37 H 1.08999 * 109.46788 * 180.02562 * 14 13 12
38 38 H 1.08996 * 109.47042 * 60.00520 * 14 13 12
39 39 H 0.97005 * 120.00017 * 94.99918 * 17 15 14
40 40 H 1.08994 * 109.47366 * 65.31649 * 20 18 17
41 41 H 1.08999 * 109.46779 * 305.31403 * 20 18 17
42 42 H 1.09004 * 110.77946 * 30.70630 * 22 21 20
43 43 H 1.09010 * 110.77576 * 267.27599 * 22 21 20
44 44 H 1.09000 * 110.74189 * 92.72865 * 23 22 21
45 45 H 1.08998 * 110.74256 * 215.88379 * 23 22 21
46 46 H 1.08005 * 119.82916 * 359.80918 * 25 24 23
47 47 H 1.07991 * 120.06349 * 180.02562 * 26 25 24
48 48 H 1.08005 * 119.86259 * 180.10816 * 27 26 25
49 49 H 1.07996 * 119.89788 * 180.02562 * 28 27 26
50 50 H 1.09008 * 109.47445 * 59.99705 * 30 10 9
51 51 H 1.09000 * 109.47214 * 299.99932 * 30 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 2.4977 2.0464 -1.4000
5 1 1.4478 2.6526 0.7002
6 1 3.5478 1.4400 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0903 -1.2022 -0.0010
9 7 1.3255 -2.3880 -0.0005
10 6 2.0580 -3.6568 -0.0005
11 1 2.9686 -3.5506 0.5889
12 6 2.4217 -4.0356 -1.4376
13 6 3.1862 -5.3610 -1.4378
14 6 2.3084 -6.4560 -0.8283
15 6 1.9446 -6.0773 0.6088
16 1 1.3197 -6.8576 1.0431
17 7 3.1686 -5.9351 1.4010
18 6 3.7346 -7.0194 1.9672
19 8 3.2309 -8.1127 1.8203
20 6 4.9935 -6.8730 2.7827
21 7 5.4767 -8.2021 3.1800
22 6 6.1205 -8.8940 2.0422
23 6 7.1919 -9.7646 2.7383
24 6 7.4634 -9.0076 4.0232
25 6 8.4920 -9.0826 4.9333
26 6 8.5008 -8.2577 6.0433
27 6 7.4714 -7.3548 6.2389
28 6 6.4348 -7.2756 5.3328
29 6 6.4170 -8.1060 4.2133
30 6 1.1808 -4.7522 0.6091
31 1 -0.4850 0.8401 0.0004
32 1 0.3555 -2.3881 -0.0005
33 1 1.5110 -4.1419 -2.0270
34 1 3.0467 -3.2553 -1.8720
35 1 3.4457 -5.6307 -2.4615
36 1 4.0969 -5.2552 -0.8482
37 1 2.8531 -7.4001 -0.8280
38 1 1.3977 -6.5618 -1.4178
39 1 3.5717 -5.0606 1.5182
40 1 4.7826 -6.2818 3.6737
41 1 5.7564 -6.3723 2.1865
42 1 6.5850 -8.1764 1.3659
43 1 5.4008 -9.5174 1.5115
44 1 6.8018 -10.7598 2.9515
45 1 8.0937 -9.8272 2.1293
46 1 9.2951 -9.7883 4.7795
47 1 9.3098 -8.3183 6.7561
48 1 7.4793 -6.7095 7.1049
49 1 5.6343 -6.5682 5.4912
50 1 0.2700 -4.8584 0.0196
51 1 0.9216 -4.4823 1.6328
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981532628.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:31
Heat of formation + Delta-G solvation = -11.054993 kcal
Electronic energy + Delta-G solvation = -29954.996826 eV
Core-core repulsion = 26046.126717 eV
Total energy + Delta-G solvation = -3908.870109 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.90023 -40.96198 -39.20857 -37.47016 -36.10794 -34.45737 -33.83312 -32.91152
-31.41633 -30.57792 -29.83135 -29.50581 -27.46400 -25.67343 -23.92523 -23.44470
-22.81271 -22.37720 -22.20010 -21.41774 -20.10182 -19.16498 -18.41677 -17.65942
-17.07697 -16.86449 -16.73761 -16.31287 -16.23939 -16.11053 -15.93318 -15.30568
-15.16543 -14.91386 -14.74850 -14.56441 -14.43453 -13.94021 -13.79444 -13.70203
-13.47827 -13.10230 -13.07446 -13.01900 -12.91736 -12.89288 -12.77118 -12.41755
-12.27170 -12.22606 -12.04760 -11.94752 -11.74129 -11.59017 -11.45590 -11.24986
-10.99859 -10.83436 -10.59605 -9.99985 -9.72186 -8.97926 -8.67150 -7.92029
-5.19853 0.42293 0.48463 1.48614 1.49458 1.57532 1.63800 2.02663
2.57427 2.69297 2.94366 3.41560 3.55479 3.58100 3.68794 3.84223
3.88845 3.93005 4.02593 4.08877 4.17290 4.26624 4.27739 4.30853
4.32483 4.36672 4.49225 4.53703 4.56233 4.65220 4.67530 4.72948
4.75797 4.81928 4.93438 4.96864 4.98009 5.09628 5.10998 5.18757
5.23584 5.37214 5.37781 5.51455 5.51702 5.54661 5.56648 5.65665
5.67456 5.75561 5.90805 6.26044 6.30246 6.57821 7.26790 7.36404
8.13406 8.35251 9.31552
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.012798 B = 0.002413 C = 0.002149
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2187.337752 B =11598.629564 C =13026.213324
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.971 5.971
2 C -0.078 4.078
3 Si 0.968 3.032
4 H -0.291 1.291
5 H -0.299 1.299
6 H -0.267 1.267
7 C -0.232 4.232
8 H 0.078 0.922
9 N -0.738 5.738
10 C 0.178 3.822
11 H 0.048 0.952
12 C -0.128 4.128
13 C -0.103 4.103
14 C -0.120 4.120
15 C 0.162 3.838
16 H 0.078 0.922
17 N -0.713 5.713
18 C 0.516 3.484
19 O -0.561 6.561
20 C 0.030 3.970
21 N -0.473 5.473
22 C 0.048 3.952
23 C -0.078 4.078
24 C -0.156 4.156
25 C -0.086 4.086
26 C -0.149 4.149
27 C -0.098 4.098
28 C -0.156 4.156
29 C 0.076 3.924
30 C -0.121 4.121
31 H 0.249 0.751
32 H 0.371 0.629
33 H 0.046 0.954
34 H 0.041 0.959
35 H 0.067 0.933
36 H 0.063 0.937
37 H 0.063 0.937
38 H 0.075 0.925
39 H 0.408 0.592
40 H 0.120 0.880
41 H 0.095 0.905
42 H 0.068 0.932
43 H 0.088 0.912
44 H 0.087 0.913
45 H 0.101 0.899
46 H 0.141 0.859
47 H 0.147 0.853
48 H 0.145 0.855
49 H 0.126 0.874
50 H 0.075 0.925
51 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.111 -19.629 7.496 27.740
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.622 5.622
2 C -0.270 4.270
3 Si 0.797 3.203
4 H -0.218 1.218
5 H -0.226 1.226
6 H -0.192 1.192
7 C -0.364 4.364
8 H 0.096 0.904
9 N -0.377 5.377
10 C 0.070 3.930
11 H 0.066 0.934
12 C -0.169 4.169
13 C -0.141 4.141
14 C -0.159 4.159
15 C 0.057 3.943
16 H 0.096 0.904
17 N -0.366 5.366
18 C 0.303 3.697
19 O -0.439 6.439
20 C -0.099 4.099
21 N -0.187 5.187
22 C -0.077 4.077
23 C -0.116 4.116
24 C -0.159 4.159
25 C -0.105 4.105
26 C -0.168 4.168
27 C -0.117 4.117
28 C -0.177 4.177
29 C -0.022 4.022
30 C -0.160 4.160
31 H 0.058 0.942
32 H 0.203 0.797
33 H 0.065 0.935
34 H 0.060 0.940
35 H 0.085 0.915
36 H 0.082 0.918
37 H 0.081 0.919
38 H 0.094 0.906
39 H 0.245 0.755
40 H 0.138 0.862
41 H 0.113 0.887
42 H 0.086 0.914
43 H 0.107 0.893
44 H 0.105 0.895
45 H 0.119 0.881
46 H 0.159 0.841
47 H 0.165 0.835
48 H 0.163 0.837
49 H 0.143 0.857
50 H 0.093 0.907
51 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 17.377 -20.560 7.487 27.941
hybrid contribution 0.019 2.048 -0.336 2.076
sum 17.397 -18.512 7.151 26.390
Atomic orbital electron populations
1.69817 1.06597 1.25823 1.59956 1.25516 0.96290 1.00969 1.04270
0.85218 0.77868 0.79942 0.77238 1.21817 1.22639 1.19152 1.19598
0.91413 0.85115 1.40236 0.90434 1.42657 1.05453 1.01016 1.88594
1.20369 0.94048 0.84545 0.94073 0.93375 1.22119 0.99445 0.96493
0.98807 1.21395 0.98186 0.93624 1.00880 1.21834 1.00775 0.98282
0.94967 1.20755 0.85398 0.96724 0.91452 0.90362 1.46121 1.27749
1.10601 1.52159 1.20684 0.85896 0.84060 0.79104 1.90674 1.64496
1.27166 1.61597 1.22285 0.95398 0.90882 1.01368 1.60030 1.33243
1.17487 1.07903 1.23338 0.95539 0.97238 0.91612 1.21301 0.99076
0.98431 0.92742 1.20787 0.95438 1.00255 0.99412 1.20595 0.97395
0.99205 0.93261 1.21349 0.99978 0.96988 0.98442 1.21203 0.93267
0.98526 0.98681 1.20714 1.01051 1.01075 0.94833 1.19990 0.90362
0.97305 0.94530 1.21955 0.99029 0.93611 1.01397 0.94243 0.79715
0.93545 0.93970 0.91451 0.91833 0.91871 0.90625 0.75503 0.86233
0.88677 0.91350 0.89340 0.89472 0.88072 0.84149 0.83515 0.83719
0.85653 0.90682 0.92032
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -58.47 13.06 21.65 0.28 -58.18 16
2 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16
3 Si 0.97 45.02 29.55 68.60 2.03 47.05 16
4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16
5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16
6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16
7 C -0.23 -12.24 9.93 84.04 0.83 -11.40 16
8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16
9 N -0.74 -35.09 5.12 -322.93 -1.65 -36.74 16
10 C 0.18 6.26 2.60 44.99 0.12 6.38 16
11 H 0.05 1.64 6.44 -2.39 -0.02 1.62 16
12 C -0.13 -4.15 5.50 30.60 0.17 -3.99 16
13 C -0.10 -2.53 5.77 30.60 0.18 -2.35 16
14 C -0.12 -2.88 5.60 30.60 0.17 -2.71 16
15 C 0.16 4.16 2.78 44.98 0.13 4.28 16
16 H 0.08 2.17 7.58 -2.39 -0.02 2.15 16
17 N -0.71 -16.53 4.23 -442.62 -1.87 -18.40 16
18 C 0.52 12.74 7.60 87.66 0.67 13.40 16
19 O -0.56 -17.90 15.43 -3.02 -0.05 -17.95 16
20 C 0.03 0.59 5.31 85.56 0.45 1.04 16
21 N -0.47 -10.52 4.58 -692.48 -3.17 -13.69 16
22 C 0.05 0.91 6.27 86.66 0.54 1.46 16
23 C -0.08 -1.22 7.02 30.68 0.22 -1.01 16
24 C -0.16 -2.86 6.25 -19.46 -0.12 -2.98 16
25 C -0.09 -1.29 10.01 22.12 0.22 -1.07 16
26 C -0.15 -2.04 10.06 22.30 0.22 -1.81 16
27 C -0.10 -1.49 10.02 22.21 0.22 -1.26 16
28 C -0.16 -2.89 9.44 22.47 0.21 -2.68 16
29 C 0.08 1.59 5.97 38.40 0.23 1.82 16
30 C -0.12 -3.63 5.07 30.58 0.16 -3.48 16
31 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16
32 H 0.37 19.33 7.80 -92.71 -0.72 18.61 16
33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16
34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16
35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16
36 H 0.06 1.47 7.60 -2.38 -0.02 1.45 16
37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16
38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16
39 H 0.41 8.65 6.87 -92.70 -0.64 8.01 16
40 H 0.12 2.07 6.63 -2.39 -0.02 2.06 16
41 H 0.10 1.50 7.68 -2.39 -0.02 1.48 16
42 H 0.07 1.12 7.58 -2.38 -0.02 1.11 16
43 H 0.09 1.90 7.82 -2.38 -0.02 1.88 16
44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16
45 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16
46 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16
47 H 0.15 1.24 8.06 -2.92 -0.02 1.22 16
48 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16
49 H 0.13 2.10 7.11 -2.91 -0.02 2.08 16
50 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16
51 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
Total: -1.00 -68.77 400.68 0.23 -68.55
By element:
Atomic # 1 Polarization: 40.07 SS G_CDS: -0.42 Total: 39.65 kcal
Atomic # 6 Polarization: -15.36 SS G_CDS: 5.08 Total: -10.28 kcal
Atomic # 7 Polarization: -120.60 SS G_CDS: -6.41 Total: -127.01 kcal
Atomic # 8 Polarization: -17.90 SS G_CDS: -0.05 Total: -17.95 kcal
Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal
Total: -68.77 0.23 -68.55 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981532628.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.492 kcal
(2) G-P(sol) polarization free energy of solvation -68.774 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.283 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.546 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds