Wall clock time and date at job start Sat Apr 11 2020 07:01:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38147 * 119.89840 * 2 1
4 4 C 1.38202 * 119.94049 * 179.97438 * 3 2 1
5 5 C 1.38152 * 119.93151 * 0.02562 * 4 3 2
6 6 C 1.38445 * 120.21779 * 359.97438 * 5 4 3
7 7 C 1.38257 * 119.84895 * 0.02562 * 6 5 4
8 8 C 1.51370 * 109.75552 * 179.97438 * 7 6 5
9 9 C 1.54347 * 105.17047 * 17.19453 * 8 7 6
10 10 C 1.51371 * 130.40091 * 179.97438 * 6 5 4
11 11 H 1.08996 * 110.30740 * 281.86105 * 10 6 5
12 12 N 1.46500 * 110.29946 * 43.91212 * 10 6 5
13 13 C 1.34769 * 120.00492 * 273.26932 * 12 10 6
14 14 O 1.21597 * 119.99508 * 355.10080 * 13 12 10
15 15 N 1.34777 * 120.00797 * 175.10376 * 13 12 10
16 16 C 1.47079 * 120.88259 * 184.71499 * 15 13 12
17 17 C 1.53704 * 108.27302 * 128.75330 * 16 15 13
18 18 N 1.46894 * 109.25822 * 54.08141 * 17 16 15
19 19 C 1.46903 * 110.99947 * 172.60748 * 18 17 16
20 20 C 1.50698 * 109.47052 * 59.42620 * 19 18 17
21 21 H 1.08005 * 120.00341 * 355.04600 * 20 19 18
22 22 C 1.37878 * 119.99897 * 175.05170 * 20 19 18
23 23 N 1.31512 * 120.00167 * 359.97438 * 22 20 19
24 24 Si 1.86806 * 120.00133 * 179.97438 * 22 20 19
25 25 H 1.48506 * 109.47072 * 89.99688 * 24 22 20
26 26 H 1.48499 * 109.47113 * 209.99812 * 24 22 20
27 27 H 1.48500 * 109.46734 * 330.00136 * 24 22 20
28 28 C 1.46903 * 111.26725 * 296.75389 * 18 17 16
29 29 C 1.47076 * 120.87631 * 4.98726 * 15 13 12
30 30 H 1.08995 * 109.47164 * 270.01919 * 1 2 3
31 31 H 1.08998 * 109.46559 * 30.02544 * 1 2 3
32 32 H 1.08998 * 109.46690 * 150.02111 * 1 2 3
33 33 H 1.08000 * 120.02489 * 359.97438 * 3 2 1
34 34 H 1.07999 * 120.03437 * 180.02562 * 4 3 2
35 35 H 1.08001 * 119.89016 * 179.97438 * 5 4 3
36 36 H 1.09005 * 110.30505 * 136.11838 * 8 7 6
37 37 H 1.08997 * 110.30538 * 258.17422 * 8 7 6
38 38 H 1.09001 * 110.82299 * 215.41962 * 9 8 7
39 39 H 1.09009 * 110.81953 * 91.87159 * 9 8 7
40 40 H 0.97007 * 120.00120 * 93.54827 * 12 10 6
41 41 H 1.09000 * 109.62715 * 248.51551 * 16 15 13
42 42 H 1.08994 * 109.63260 * 9.10351 * 16 15 13
43 43 H 1.09001 * 109.64817 * 294.07420 * 17 16 15
44 44 H 1.09006 * 109.41969 * 173.94778 * 17 16 15
45 45 H 1.09003 * 109.47242 * 179.42470 * 19 18 17
46 46 H 1.08997 * 109.46930 * 299.42996 * 19 18 17
47 47 H 0.96999 * 120.00284 * 180.02562 * 23 22 20
48 48 H 1.08996 * 109.49325 * 303.14428 * 28 18 17
49 49 H 1.08998 * 109.48986 * 183.06942 * 28 18 17
50 50 H 1.09002 * 109.63194 * 350.89833 * 29 15 13
51 51 H 1.09004 * 109.62887 * 111.48325 * 29 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1956 1.1976 0.0000
4 6 3.5776 1.1986 0.0005
5 6 4.2678 0.0019 0.0005
6 6 3.5796 -1.1994 0.0005
7 6 2.1971 -1.2004 0.0000
8 6 1.6864 -2.6253 -0.0005
9 6 2.8897 -3.4858 0.4401
10 6 4.0921 -2.6237 0.0000
11 1 4.4175 -2.9083 -1.0006
12 7 5.1960 -2.7670 0.9525
13 6 6.4584 -2.4948 0.5671
14 8 6.6931 -2.2167 -0.5931
15 7 7.4606 -2.5308 1.4674
16 6 8.8272 -2.1376 1.0919
17 6 9.3312 -1.1082 2.1161
18 7 9.1949 -1.6641 3.4690
19 6 9.8249 -0.7867 4.4646
20 6 9.1743 0.5719 4.4202
21 1 8.4289 0.7894 3.6695
22 6 9.5307 1.5373 5.3378
23 7 10.4381 1.2724 6.2521
24 14 8.7247 3.2216 5.2823
25 1 7.5073 3.2160 6.1328
26 1 9.6769 4.2429 5.7877
27 1 8.3490 3.5446 3.8824
28 6 7.7863 -1.9134 3.8033
29 6 7.2178 -2.9699 2.8500
30 1 -0.3633 0.0003 1.0276
31 1 -0.3632 0.8898 -0.5142
32 1 -0.3632 -0.8902 -0.5135
33 1 1.6544 2.1322 -0.0004
34 1 4.1175 2.1340 0.0010
35 1 5.3479 0.0035 0.0005
36 1 0.8649 -2.7330 0.7078
37 1 1.3620 -2.9105 -1.0013
38 1 2.8906 -4.4448 -0.0778
39 1 2.8893 -3.6278 1.5209
40 1 5.0188 -3.0618 1.8596
41 1 9.4755 -3.0138 1.0997
42 1 8.8200 -1.6927 0.0970
43 1 8.7423 -0.1943 2.0374
44 1 10.3795 -0.8840 1.9189
45 1 9.7006 -1.2167 5.4584
46 1 10.8873 -0.6881 4.2415
47 1 10.6886 1.9514 6.8979
48 1 7.2190 -0.9883 3.7010
49 1 7.7143 -2.2731 4.8296
50 1 6.1460 -3.0756 3.0178
51 1 7.7144 -3.9246 3.0234
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602251380.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:22
Heat of formation + Delta-G solvation = 7.302101 kcal
Electronic energy + Delta-G solvation = -30752.323915 eV
Core-core repulsion = 26844.249830 eV
Total energy + Delta-G solvation = -3908.074086 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.60 seconds
Orbital eigenvalues (eV)
-40.80730 -39.71867 -37.65309 -36.27076 -34.42451 -33.70467 -32.71336 -32.19969
-30.54532 -29.17966 -28.31403 -27.07052 -26.35395 -25.19224 -23.15245 -22.48401
-22.32513 -21.24104 -20.63904 -20.22911 -19.18258 -17.83083 -16.57345 -16.38095
-16.36005 -15.58037 -15.27505 -15.16675 -14.83951 -14.64691 -14.40887 -14.02530
-13.93360 -13.85448 -13.70283 -13.52145 -13.11725 -13.06377 -12.63148 -12.44289
-12.33282 -12.16299 -11.99052 -11.89794 -11.81981 -11.37385 -11.17174 -11.16604
-11.05519 -10.99370 -10.89290 -10.67553 -10.63800 -10.28138 -9.97821 -9.83642
-9.65284 -9.12019 -8.65070 -8.59628 -8.48346 -8.29331 -7.26898 -6.08207
-4.17567 1.27114 1.33053 2.80160 3.23704 3.31110 3.34589 3.36122
3.67801 3.97330 4.18276 4.36493 4.38867 4.71839 4.78467 4.87252
4.90373 4.93785 5.02094 5.20193 5.22139 5.30728 5.36226 5.41671
5.43335 5.48628 5.53462 5.54736 5.58420 5.63315 5.67957 5.74217
5.80442 5.91299 5.97319 6.00511 6.11631 6.13798 6.40369 6.41617
6.49717 6.50792 6.59910 6.66261 6.70403 6.74229 6.96753 7.12664
7.18844 7.46131 7.83397 7.93790 8.08998 8.16764 8.23150 8.75016
8.92434 9.49989 10.96904
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.010643 B = 0.003357 C = 0.002781
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2630.281730 B = 8338.204051 C =10066.157228
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.081 4.081
3 C -0.118 4.118
4 C -0.118 4.118
5 C -0.086 4.086
6 C -0.104 4.104
7 C -0.098 4.098
8 C -0.076 4.076
9 C -0.124 4.124
10 C 0.203 3.797
11 H 0.103 0.897
12 N -0.741 5.741
13 C 0.708 3.292
14 O -0.596 6.596
15 N -0.623 5.623
16 C 0.134 3.866
17 C 0.049 3.951
18 N -0.539 5.539
19 C 0.188 3.812
20 C -0.551 4.551
21 H 0.056 0.944
22 C 0.067 3.933
23 N -0.890 5.890
24 Si 0.887 3.113
25 H -0.280 1.280
26 H -0.285 1.285
27 H -0.275 1.275
28 C 0.050 3.950
29 C 0.116 3.884
30 H 0.068 0.932
31 H 0.063 0.937
32 H 0.064 0.936
33 H 0.121 0.879
34 H 0.123 0.877
35 H 0.120 0.880
36 H 0.077 0.923
37 H 0.082 0.918
38 H 0.085 0.915
39 H 0.079 0.921
40 H 0.396 0.604
41 H 0.066 0.934
42 H 0.087 0.913
43 H 0.043 0.957
44 H 0.078 0.922
45 H 0.035 0.965
46 H 0.030 0.970
47 H 0.263 0.737
48 H 0.042 0.958
49 H 0.077 0.923
50 H 0.068 0.932
51 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.516 -8.923 -11.067 23.344
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.081 4.081
3 C -0.136 4.136
4 C -0.136 4.136
5 C -0.104 4.104
6 C -0.105 4.105
7 C -0.099 4.099
8 C -0.113 4.113
9 C -0.162 4.162
10 C 0.097 3.903
11 H 0.121 0.879
12 N -0.399 5.399
13 C 0.410 3.590
14 O -0.475 6.475
15 N -0.360 5.360
16 C 0.010 3.990
17 C -0.080 4.080
18 N -0.264 5.264
19 C 0.062 3.938
20 C -0.590 4.590
21 H 0.074 0.926
22 C -0.136 4.136
23 N -0.528 5.528
24 Si 0.715 3.285
25 H -0.206 1.206
26 H -0.210 1.210
27 H -0.200 1.200
28 C -0.079 4.079
29 C -0.008 4.008
30 H 0.086 0.914
31 H 0.082 0.918
32 H 0.083 0.917
33 H 0.139 0.861
34 H 0.141 0.859
35 H 0.138 0.862
36 H 0.095 0.905
37 H 0.100 0.900
38 H 0.104 0.896
39 H 0.098 0.902
40 H 0.233 0.767
41 H 0.084 0.916
42 H 0.105 0.895
43 H 0.061 0.939
44 H 0.096 0.904
45 H 0.053 0.947
46 H 0.048 0.952
47 H 0.072 0.928
48 H 0.060 0.940
49 H 0.095 0.905
50 H 0.086 0.914
51 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -17.965 -9.095 -11.743 23.310
hybrid contribution -0.770 1.946 0.709 2.209
sum -18.735 -7.149 -11.034 22.888
Atomic orbital electron populations
1.20744 0.91468 1.02490 1.02126 1.19365 0.95673 0.91867 1.01177
1.20925 0.94232 0.97131 1.01344 1.21086 0.94243 0.97955 1.00302
1.20695 1.00306 0.91163 0.98280 1.20865 0.93923 0.95293 1.00428
1.20291 0.93890 0.94371 1.01312 1.20959 0.97844 0.90394 1.02134
1.22597 0.93002 0.98422 1.02164 1.20281 0.85266 0.90390 0.94318
0.87930 1.45345 1.05139 1.74046 1.15333 1.15844 0.80467 0.78006
0.84693 1.90886 1.82998 1.56811 1.16816 1.47360 1.08781 1.69507
1.10320 1.21810 0.80003 0.98276 0.98866 1.22365 1.01033 0.95285
0.89313 1.62484 1.13173 1.47974 1.02739 1.19765 0.94543 0.89216
0.90245 1.21740 1.23485 0.98657 1.15136 0.92602 1.24944 0.94877
0.98619 0.95184 1.69934 1.31009 1.34460 1.17434 0.86670 0.79291
0.84211 0.78334 1.20636 1.21039 1.19956 1.22208 0.91003 0.96996
0.97711 1.21838 0.99174 0.98705 0.81076 0.91370 0.91751 0.91710
0.86080 0.85916 0.86216 0.90451 0.89969 0.89642 0.90221 0.76699
0.91603 0.89514 0.93914 0.90382 0.94699 0.95187 0.92753 0.93967
0.90476 0.91422 0.91040
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.85 9.87 36.01 0.36 -0.50 16
2 C -0.08 -0.87 5.88 -104.57 -0.62 -1.48 16
3 C -0.12 -1.35 9.69 -39.63 -0.38 -1.74 16
4 C -0.12 -1.55 10.05 -39.63 -0.40 -1.95 16
5 C -0.09 -1.27 9.88 -39.54 -0.39 -1.66 16
6 C -0.10 -1.35 5.78 -104.21 -0.60 -1.95 16
7 C -0.10 -1.08 6.00 -104.20 -0.63 -1.71 16
8 C -0.08 -0.59 6.11 -26.85 -0.16 -0.76 16
9 C -0.12 -0.97 6.75 -25.31 -0.17 -1.14 16
10 C 0.20 2.34 3.22 -68.04 -0.22 2.13 16
11 H 0.10 1.33 7.57 -51.93 -0.39 0.94 16
12 N -0.74 -9.31 5.03 -58.78 -0.30 -9.60 16
13 C 0.71 11.35 7.72 -86.93 -0.67 10.67 16
14 O -0.60 -11.40 15.26 5.28 0.08 -11.32 16
15 N -0.62 -9.81 3.00 -177.91 -0.53 -10.34 16
16 C 0.13 2.20 6.61 -3.36 -0.02 2.18 16
17 C 0.05 0.95 5.17 -3.46 -0.02 0.93 16
18 N -0.54 -11.00 4.83 -235.46 -1.14 -12.14 16
19 C 0.19 4.67 5.11 -4.98 -0.03 4.64 16
20 C -0.55 -14.84 7.76 -34.44 -0.27 -15.11 16
21 H 0.06 1.52 5.88 -52.48 -0.31 1.21 16
22 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16
23 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16
24 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16
25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
27 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
28 C 0.05 0.91 5.25 -3.70 -0.02 0.89 16
29 C 0.12 1.62 6.59 -3.61 -0.02 1.60 16
30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16
32 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16
33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16
34 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16
35 H 0.12 2.02 7.38 -52.49 -0.39 1.63 16
36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
39 H 0.08 0.56 7.81 -51.92 -0.41 0.15 16
40 H 0.40 4.17 5.88 -40.82 -0.24 3.93 16
41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
42 H 0.09 1.47 7.09 -51.93 -0.37 1.10 16
43 H 0.04 0.93 6.61 -51.93 -0.34 0.58 16
44 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16
45 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16
46 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16
47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16
48 H 0.04 0.86 7.11 -51.93 -0.37 0.49 16
49 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16
50 H 0.07 0.76 5.64 -51.93 -0.29 0.46 16
51 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
LS Contribution 397.55 15.07 5.99 5.99
Total: -1.00 -31.97 397.55 -12.66 -44.63
By element:
Atomic # 1 Polarization: 12.79 SS G_CDS: -8.12 Total: 4.66 kcal
Atomic # 6 Polarization: 1.15 SS G_CDS: -4.36 Total: -3.21 kcal
Atomic # 7 Polarization: -55.88 SS G_CDS: -1.23 Total: -57.11 kcal
Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -31.97 -12.66 -44.63 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602251380.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.933 kcal
(2) G-P(sol) polarization free energy of solvation -31.968 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.965 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.663 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.630 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.302 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.60 seconds