Wall clock time and date at job start Sat Apr 11 2020 07:01:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38147 * 119.89840 * 2 1
4 4 C 1.38202 * 119.94049 * 179.97438 * 3 2 1
5 5 C 1.38152 * 119.93151 * 0.02562 * 4 3 2
6 6 C 1.38445 * 120.21779 * 359.97438 * 5 4 3
7 7 C 1.38257 * 119.84895 * 0.02562 * 6 5 4
8 8 C 1.51370 * 109.75552 * 179.97438 * 7 6 5
9 9 C 1.54347 * 105.17047 * 17.19453 * 8 7 6
10 10 C 1.51371 * 130.40091 * 179.97438 * 6 5 4
11 11 H 1.08996 * 110.30740 * 281.86105 * 10 6 5
12 12 N 1.46500 * 110.29946 * 43.91212 * 10 6 5
13 13 C 1.34769 * 120.00492 * 273.26932 * 12 10 6
14 14 O 1.21597 * 119.99508 * 355.10080 * 13 12 10
15 15 N 1.34777 * 120.00797 * 175.10376 * 13 12 10
16 16 C 1.47079 * 120.88259 * 184.71499 * 15 13 12
17 17 C 1.53704 * 108.27302 * 128.75330 * 16 15 13
18 18 N 1.46894 * 109.25822 * 54.08141 * 17 16 15
19 19 C 1.46903 * 110.99947 * 172.60748 * 18 17 16
20 20 C 1.50698 * 109.47052 * 59.42620 * 19 18 17
21 21 H 1.08005 * 120.00341 * 355.04600 * 20 19 18
22 22 C 1.37878 * 119.99897 * 175.05170 * 20 19 18
23 23 N 1.31512 * 120.00167 * 359.97438 * 22 20 19
24 24 Si 1.86806 * 120.00133 * 179.97438 * 22 20 19
25 25 H 1.48506 * 109.47072 * 89.99688 * 24 22 20
26 26 H 1.48499 * 109.47113 * 209.99812 * 24 22 20
27 27 H 1.48500 * 109.46734 * 330.00136 * 24 22 20
28 28 C 1.46903 * 111.26725 * 296.75389 * 18 17 16
29 29 C 1.47076 * 120.87631 * 4.98726 * 15 13 12
30 30 H 1.08995 * 109.47164 * 270.01919 * 1 2 3
31 31 H 1.08998 * 109.46559 * 30.02544 * 1 2 3
32 32 H 1.08998 * 109.46690 * 150.02111 * 1 2 3
33 33 H 1.08000 * 120.02489 * 359.97438 * 3 2 1
34 34 H 1.07999 * 120.03437 * 180.02562 * 4 3 2
35 35 H 1.08001 * 119.89016 * 179.97438 * 5 4 3
36 36 H 1.09005 * 110.30505 * 136.11838 * 8 7 6
37 37 H 1.08997 * 110.30538 * 258.17422 * 8 7 6
38 38 H 1.09001 * 110.82299 * 215.41962 * 9 8 7
39 39 H 1.09009 * 110.81953 * 91.87159 * 9 8 7
40 40 H 0.97007 * 120.00120 * 93.54827 * 12 10 6
41 41 H 1.09000 * 109.62715 * 248.51551 * 16 15 13
42 42 H 1.08994 * 109.63260 * 9.10351 * 16 15 13
43 43 H 1.09001 * 109.64817 * 294.07420 * 17 16 15
44 44 H 1.09006 * 109.41969 * 173.94778 * 17 16 15
45 45 H 1.09003 * 109.47242 * 179.42470 * 19 18 17
46 46 H 1.08997 * 109.46930 * 299.42996 * 19 18 17
47 47 H 0.96999 * 120.00284 * 180.02562 * 23 22 20
48 48 H 1.08996 * 109.49325 * 303.14428 * 28 18 17
49 49 H 1.08998 * 109.48986 * 183.06942 * 28 18 17
50 50 H 1.09002 * 109.63194 * 350.89833 * 29 15 13
51 51 H 1.09004 * 109.62887 * 111.48325 * 29 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1956 1.1976 0.0000
4 6 3.5776 1.1986 0.0005
5 6 4.2678 0.0019 0.0005
6 6 3.5796 -1.1994 0.0005
7 6 2.1971 -1.2004 0.0000
8 6 1.6864 -2.6253 -0.0005
9 6 2.8897 -3.4858 0.4401
10 6 4.0921 -2.6237 0.0000
11 1 4.4175 -2.9083 -1.0006
12 7 5.1960 -2.7670 0.9525
13 6 6.4584 -2.4948 0.5671
14 8 6.6931 -2.2167 -0.5931
15 7 7.4606 -2.5308 1.4674
16 6 8.8272 -2.1376 1.0919
17 6 9.3312 -1.1082 2.1161
18 7 9.1949 -1.6641 3.4690
19 6 9.8249 -0.7867 4.4646
20 6 9.1743 0.5719 4.4202
21 1 8.4289 0.7894 3.6695
22 6 9.5307 1.5373 5.3378
23 7 10.4381 1.2724 6.2521
24 14 8.7247 3.2216 5.2823
25 1 7.5073 3.2160 6.1328
26 1 9.6769 4.2429 5.7877
27 1 8.3490 3.5446 3.8824
28 6 7.7863 -1.9134 3.8033
29 6 7.2178 -2.9699 2.8500
30 1 -0.3633 0.0003 1.0276
31 1 -0.3632 0.8898 -0.5142
32 1 -0.3632 -0.8902 -0.5135
33 1 1.6544 2.1322 -0.0004
34 1 4.1175 2.1340 0.0010
35 1 5.3479 0.0035 0.0005
36 1 0.8649 -2.7330 0.7078
37 1 1.3620 -2.9105 -1.0013
38 1 2.8906 -4.4448 -0.0778
39 1 2.8893 -3.6278 1.5209
40 1 5.0188 -3.0618 1.8596
41 1 9.4755 -3.0138 1.0997
42 1 8.8200 -1.6927 0.0970
43 1 8.7423 -0.1943 2.0374
44 1 10.3795 -0.8840 1.9189
45 1 9.7006 -1.2167 5.4584
46 1 10.8873 -0.6881 4.2415
47 1 10.6886 1.9514 6.8979
48 1 7.2190 -0.9883 3.7010
49 1 7.7143 -2.2731 4.8296
50 1 6.1460 -3.0756 3.0178
51 1 7.7144 -3.9246 3.0234
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602251380.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:21
Heat of formation + Delta-G solvation = -12.309134 kcal
Electronic energy + Delta-G solvation = -30753.174322 eV
Core-core repulsion = 26844.249830 eV
Total energy + Delta-G solvation = -3908.924493 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-41.84251 -40.85332 -39.12978 -37.22770 -36.03094 -34.77634 -34.26675 -33.49088
-31.93740 -30.03905 -29.89447 -28.08678 -27.32234 -26.82196 -24.57784 -24.20779
-23.11081 -22.45223 -21.77984 -21.21921 -20.53605 -19.16772 -18.35746 -17.65550
-17.32894 -16.85069 -16.57514 -16.36807 -16.12487 -15.98964 -15.65010 -15.56057
-15.34896 -15.03235 -14.78684 -14.57071 -14.36737 -13.95703 -13.90924 -13.62553
-13.54790 -13.09210 -13.04593 -13.03262 -12.96587 -12.70625 -12.65963 -12.52973
-12.48864 -12.28186 -12.19646 -11.99802 -11.86079 -11.83021 -11.77086 -11.65372
-11.19792 -10.64888 -10.27309 -9.62795 -9.56607 -9.47205 -9.06631 -8.20863
-6.39639 0.34266 0.39462 1.30003 1.31908 1.41585 1.62077 2.10707
2.31781 2.71984 2.90958 3.04216 3.28117 3.39576 3.61546 3.95932
3.99387 4.03231 4.06792 4.08554 4.18415 4.21158 4.25855 4.33924
4.43097 4.50350 4.57668 4.65140 4.66903 4.74675 4.75656 4.85841
4.87919 4.89448 4.94607 5.02482 5.05926 5.15465 5.16030 5.18975
5.21970 5.29347 5.32369 5.43373 5.46869 5.54541 5.63046 5.69198
5.69752 5.88908 6.00396 6.08082 6.18728 6.42566 6.80253 6.92563
7.31797 7.51745 8.81465
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.010643 B = 0.003357 C = 0.002781
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2630.281730 B = 8338.204051 C =10066.157228
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.083 4.083
3 C -0.123 4.123
4 C -0.137 4.137
5 C -0.118 4.118
6 C -0.123 4.123
7 C -0.098 4.098
8 C -0.071 4.071
9 C -0.112 4.112
10 C 0.198 3.802
11 H 0.084 0.916
12 N -0.727 5.727
13 C 0.705 3.295
14 O -0.632 6.632
15 N -0.628 5.628
16 C 0.145 3.855
17 C 0.056 3.944
18 N -0.533 5.533
19 C 0.201 3.799
20 C -0.557 4.557
21 H 0.047 0.953
22 C 0.018 3.982
23 N -0.921 5.921
24 Si 0.949 3.051
25 H -0.272 1.272
26 H -0.277 1.277
27 H -0.277 1.277
28 C 0.051 3.949
29 C 0.126 3.874
30 H 0.078 0.922
31 H 0.073 0.927
32 H 0.080 0.920
33 H 0.143 0.857
34 H 0.121 0.879
35 H 0.082 0.918
36 H 0.101 0.899
37 H 0.099 0.901
38 H 0.108 0.892
39 H 0.093 0.907
40 H 0.408 0.592
41 H 0.085 0.915
42 H 0.080 0.920
43 H 0.011 0.989
44 H 0.075 0.925
45 H 0.016 0.984
46 H 0.007 0.993
47 H 0.266 0.734
48 H 0.013 0.987
49 H 0.083 0.917
50 H 0.102 0.898
51 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.071 -10.487 -11.105 26.841
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.083 4.083
3 C -0.141 4.141
4 C -0.155 4.155
5 C -0.136 4.136
6 C -0.125 4.125
7 C -0.098 4.098
8 C -0.108 4.108
9 C -0.150 4.150
10 C 0.093 3.907
11 H 0.102 0.898
12 N -0.384 5.384
13 C 0.407 3.593
14 O -0.513 6.513
15 N -0.365 5.365
16 C 0.022 3.978
17 C -0.073 4.073
18 N -0.257 5.257
19 C 0.075 3.925
20 C -0.596 4.596
21 H 0.065 0.935
22 C -0.182 4.182
23 N -0.560 5.560
24 Si 0.775 3.225
25 H -0.197 1.197
26 H -0.202 1.202
27 H -0.202 1.202
28 C -0.079 4.079
29 C 0.003 3.997
30 H 0.097 0.903
31 H 0.092 0.908
32 H 0.099 0.901
33 H 0.161 0.839
34 H 0.139 0.861
35 H 0.101 0.899
36 H 0.119 0.881
37 H 0.117 0.883
38 H 0.126 0.874
39 H 0.112 0.888
40 H 0.247 0.753
41 H 0.103 0.897
42 H 0.098 0.902
43 H 0.029 0.971
44 H 0.093 0.907
45 H 0.034 0.966
46 H 0.025 0.975
47 H 0.075 0.925
48 H 0.031 0.969
49 H 0.101 0.899
50 H 0.120 0.880
51 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -21.556 -10.682 -11.763 26.780
hybrid contribution 0.321 2.460 0.690 2.575
sum -21.236 -8.222 -11.074 25.321
Atomic orbital electron populations
1.20806 0.88727 1.03847 1.03155 1.19827 0.97664 0.91367 0.99434
1.21224 0.93395 0.98769 1.00750 1.21195 0.95491 0.97445 1.01333
1.20592 0.98681 0.93070 1.01306 1.21093 0.95272 0.95208 1.00880
1.20742 0.92933 0.96404 0.99753 1.21069 0.98264 0.87698 1.03805
1.22639 0.90516 0.98524 1.03294 1.20496 0.86143 0.90593 0.93471
0.89786 1.45258 1.04132 1.72883 1.16120 1.16005 0.81372 0.77740
0.84190 1.90858 1.83678 1.58297 1.18498 1.47397 1.08453 1.69566
1.11036 1.21606 0.80984 0.97972 0.97272 1.22309 1.00496 0.95024
0.89506 1.62428 1.14778 1.46268 1.02199 1.19431 0.93491 0.89155
0.90467 1.21927 1.23184 0.99781 1.14746 0.93523 1.25693 0.95423
1.02147 0.94908 1.70029 1.32148 1.35736 1.18117 0.85698 0.78677
0.80033 0.78138 1.19707 1.20203 1.20213 1.22284 0.89013 0.97135
0.99450 1.21885 1.01297 0.97663 0.78821 0.90303 0.90786 0.90082
0.83937 0.86088 0.89929 0.88074 0.88308 0.87364 0.88814 0.75325
0.89665 0.90183 0.97104 0.90681 0.96596 0.97527 0.92454 0.96881
0.89909 0.88026 0.88856
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.26 9.87 71.24 0.70 -0.56 16
2 C -0.08 -1.60 5.88 -19.83 -0.12 -1.71 16
3 C -0.12 -2.73 9.69 22.24 0.22 -2.51 16
4 C -0.14 -3.78 10.05 22.24 0.22 -3.56 16
5 C -0.12 -3.72 9.88 22.30 0.22 -3.50 16
6 C -0.12 -3.20 5.78 -19.60 -0.11 -3.31 16
7 C -0.10 -1.95 6.00 -19.59 -0.12 -2.07 16
8 C -0.07 -0.82 6.11 30.52 0.19 -0.64 16
9 C -0.11 -1.33 6.75 31.51 0.21 -1.12 16
10 C 0.20 4.36 3.22 44.92 0.14 4.51 16
11 H 0.08 2.17 7.57 -2.39 -0.02 2.15 16
12 N -0.73 -17.49 5.03 -458.16 -2.30 -19.79 16
13 C 0.71 22.67 7.72 179.06 1.38 24.06 16
14 O -0.63 -24.99 15.26 -4.02 -0.06 -25.05 16
15 N -0.63 -19.55 3.00 -835.04 -2.51 -22.06 16
16 C 0.15 4.85 6.61 86.51 0.57 5.42 16
17 C 0.06 2.24 5.17 86.54 0.45 2.69 16
18 N -0.53 -22.24 4.83 -898.87 -4.34 -26.58 16
19 C 0.20 10.39 5.11 85.56 0.44 10.83 16
20 C -0.56 -31.05 7.76 25.60 0.20 -30.86 16
21 H 0.05 2.65 5.88 -2.91 -0.02 2.63 16
22 C 0.02 1.04 5.46 84.66 0.46 1.50 16
23 N -0.92 -54.31 13.29 21.45 0.28 -54.03 16
24 Si 0.95 44.63 29.54 68.60 2.03 46.65 16
25 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16
26 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16
27 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
28 C 0.05 1.82 5.25 86.38 0.45 2.27 16
29 C 0.13 3.31 6.59 86.35 0.57 3.88 16
30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16
31 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16
32 H 0.08 0.70 7.67 -2.39 -0.02 0.68 16
33 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16
34 H 0.12 3.17 8.06 -2.91 -0.02 3.14 16
35 H 0.08 3.13 7.38 -2.91 -0.02 3.10 16
36 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16
37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16
38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16
39 H 0.09 0.89 7.81 -2.38 -0.02 0.88 16
40 H 0.41 7.61 5.88 -92.70 -0.55 7.06 16
41 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16
42 H 0.08 2.81 7.09 -2.39 -0.02 2.79 16
43 H 0.01 0.49 6.61 -2.39 -0.02 0.48 16
44 H 0.07 2.99 8.11 -2.38 -0.02 2.97 16
45 H 0.02 0.88 8.07 -2.39 -0.02 0.86 16
46 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16
47 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16
48 H 0.01 0.54 7.11 -2.39 -0.02 0.52 16
49 H 0.08 2.88 8.05 -2.39 -0.02 2.86 16
50 H 0.10 1.98 5.64 -2.39 -0.01 1.97 16
51 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16
Total: -1.00 -73.49 397.55 -0.43 -73.92
By element:
Atomic # 1 Polarization: 21.24 SS G_CDS: 0.39 Total: 21.62 kcal
Atomic # 6 Polarization: -0.77 SS G_CDS: 6.08 Total: 5.31 kcal
Atomic # 7 Polarization: -113.59 SS G_CDS: -8.87 Total: -122.46 kcal
Atomic # 8 Polarization: -24.99 SS G_CDS: -0.06 Total: -25.05 kcal
Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal
Total: -73.49 -0.43 -73.92 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602251380.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.613 kcal
(2) G-P(sol) polarization free energy of solvation -73.491 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.878 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.922 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.309 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds