Wall clock time and date at job start Sat Apr 11 2020 07:00:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.31693 * 119.72031 * 2 1
4 4 C 1.31918 * 121.88478 * 179.97438 * 3 2 1
5 5 C 1.50700 * 119.46293 * 180.02562 * 4 3 2
6 6 C 1.53008 * 117.49871 * 163.64355 * 5 4 3
7 7 C 1.53002 * 117.49891 * 95.02270 * 5 4 3
8 8 C 1.38359 * 121.07997 * 0.04526 * 4 3 2
9 9 C 1.38356 * 119.29770 * 359.97438 * 8 4 3
10 10 C 1.39529 * 119.71701 * 180.02562 * 2 1 3
11 11 C 1.47843 * 120.55466 * 0.25277 * 10 2 1
12 12 O 1.21547 * 120.00238 * 353.35639 * 11 10 2
13 13 N 1.34774 * 119.99556 * 173.35695 * 11 10 2
14 14 C 1.46503 * 120.00106 * 179.97438 * 13 11 10
15 15 H 1.09000 * 109.45525 * 35.00412 * 14 13 11
16 16 C 1.53032 * 109.46310 * 275.03130 * 14 13 11
17 17 C 1.53200 * 109.31257 * 178.61070 * 16 14 13
18 18 N 1.46928 * 108.77327 * 54.63488 * 17 16 14
19 19 C 1.36935 * 120.62909 * 126.36825 * 18 17 16
20 20 H 1.08001 * 120.00237 * 208.00084 * 19 18 17
21 21 C 1.38816 * 119.99737 * 28.00156 * 19 18 17
22 22 N 1.31615 * 119.99947 * 15.93910 * 21 19 18
23 23 Si 1.86797 * 119.99875 * 195.93801 * 21 19 18
24 24 H 1.48504 * 109.47106 * 60.00215 * 23 21 19
25 25 H 1.48498 * 109.47307 * 179.97438 * 23 21 19
26 26 H 1.48505 * 109.47242 * 300.00199 * 23 21 19
27 27 C 1.46925 * 118.73978 * 306.39301 * 18 17 16
28 28 H 1.08996 * 109.58465 * 173.53548 * 27 18 17
29 29 C 1.53004 * 109.58407 * 293.82048 * 27 18 17
30 30 C 1.53041 * 109.45890 * 154.97139 * 14 13 11
31 31 H 1.09001 * 109.47016 * 263.30737 * 1 2 3
32 32 H 1.08997 * 109.46903 * 23.31181 * 1 2 3
33 33 H 1.09003 * 109.46912 * 143.30914 * 1 2 3
34 34 H 1.08995 * 115.55158 * 309.35133 * 5 4 3
35 35 H 1.08997 * 117.49803 * 0.02562 * 6 5 4
36 36 H 1.08994 * 117.49357 * 145.02268 * 6 5 4
37 37 H 1.09001 * 117.49550 * 214.97929 * 7 5 4
38 38 H 1.08999 * 117.49751 * 359.97438 * 7 5 4
39 39 H 1.07997 * 120.34829 * 179.97438 * 8 4 3
40 40 H 1.08003 * 120.84956 * 179.97438 * 9 8 4
41 41 H 0.97007 * 120.00223 * 0.02562 * 13 11 10
42 42 H 1.08992 * 109.49988 * 298.56361 * 16 14 13
43 43 H 1.09000 * 109.49801 * 58.66507 * 16 14 13
44 44 H 1.08995 * 109.58603 * 174.42249 * 17 16 14
45 45 H 1.08995 * 109.58336 * 294.70644 * 17 16 14
46 46 H 0.97002 * 119.99887 * 180.02562 * 22 21 19
47 47 H 1.09004 * 109.47117 * 60.00276 * 29 27 18
48 48 H 1.09000 * 109.46569 * 179.97438 * 29 27 18
49 49 H 1.08993 * 109.46984 * 300.00126 * 29 27 18
50 50 H 1.08995 * 109.50019 * 301.34625 * 30 14 13
51 51 H 1.09001 * 109.49628 * 61.44398 * 30 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1599 1.1437 0.0000
4 6 3.4781 1.1935 0.0005
5 6 4.1693 2.5327 0.0011
6 6 5.6504 2.5631 0.3838
7 6 4.5984 3.1057 1.3533
8 6 4.2366 0.0364 0.0001
9 6 3.5987 -1.1913 -0.0003
10 6 2.1987 -1.2118 -0.0005
11 6 1.4655 -2.4956 -0.0067
12 8 0.2558 -2.5053 0.1104
13 7 2.1387 -3.6553 -0.1422
14 6 1.4124 -4.9276 -0.1478
15 1 0.4487 -4.7933 -0.6390
16 6 1.1899 -5.3940 1.2926
17 6 0.4001 -6.7067 1.2838
18 7 1.1065 -7.6779 0.4373
19 6 1.4382 -8.9148 0.9223
20 1 2.2970 -9.4373 0.5273
21 6 0.6705 -9.4972 1.9215
22 7 -0.5312 -9.0295 2.1852
23 14 1.3429 -10.9449 2.8918
24 1 2.5895 -10.5375 3.5886
25 1 0.3364 -11.3800 3.8932
26 1 1.6378 -12.0676 1.9656
27 6 1.4507 -7.2966 -0.9392
28 1 2.0661 -8.0746 -1.3909
29 6 0.1701 -7.1161 -1.7569
30 6 2.2288 -5.9774 -0.9052
31 1 -0.3633 -0.1198 1.0207
32 1 -0.3633 0.9438 -0.4067
33 1 -0.3633 -0.8241 -0.6140
34 1 3.8311 3.2366 -0.7593
35 1 6.1249 1.6145 0.6348
36 1 6.2868 3.2871 -0.1249
37 1 4.5428 4.1866 1.4823
38 1 4.3804 2.5142 2.2425
39 1 5.3152 0.0909 0.0001
40 1 4.1661 -2.1103 -0.0010
41 1 3.1043 -3.6476 -0.2353
42 1 2.1535 -5.5525 1.7767
43 1 0.6285 -4.6355 1.8380
44 1 0.3244 -7.0944 2.2997
45 1 -0.5986 -6.5295 0.8849
46 1 -1.0674 -9.4362 2.8837
47 1 -0.4414 -6.3342 -1.3065
48 1 0.4277 -6.8328 -2.7774
49 1 -0.3880 -8.0522 -1.7691
50 1 2.4072 -5.6340 -1.9242
51 1 3.1826 -6.1303 -0.4002
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000947736415.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:05
Heat of formation + Delta-G solvation = 43.313106 kcal
Electronic energy + Delta-G solvation = -30065.968051 eV
Core-core repulsion = 26159.455520 eV
Total energy + Delta-G solvation = -3906.512531 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-41.07063 -39.51297 -37.90368 -37.16842 -34.73938 -33.27792 -32.46381 -32.24653
-30.74762 -29.57781 -27.83783 -26.88816 -25.58022 -24.26127 -23.19920 -22.40234
-22.19933 -21.86083 -20.99626 -20.30651 -18.65575 -17.70957 -17.22402 -16.77845
-16.26927 -15.74591 -15.32727 -15.10933 -15.02140 -14.63834 -14.15224 -13.99283
-13.75984 -13.69233 -13.47183 -13.15004 -13.00451 -12.69342 -12.54722 -12.48228
-12.26359 -12.12270 -12.05238 -11.81918 -11.41521 -11.08474 -11.04232 -10.94990
-10.90461 -10.77979 -10.61417 -10.37117 -10.21425 -10.08756 -10.06613 -9.90516
-9.73159 -9.56888 -9.28638 -9.08706 -8.70120 -8.41202 -6.69550 -5.78796
-3.22333 0.43380 0.94301 2.79393 3.18418 3.31497 3.37745 3.43768
3.44135 3.61084 3.80408 4.30558 4.42405 4.44225 4.47694 4.51315
4.61930 4.70363 4.84650 5.11985 5.18500 5.28576 5.32838 5.37002
5.38829 5.41598 5.51665 5.58412 5.64485 5.65359 5.72352 5.75975
5.77402 5.96384 5.99803 6.04786 6.09321 6.24694 6.28896 6.39611
6.43503 6.48928 6.56602 6.64414 6.78179 6.86284 6.93782 7.14616
7.38477 7.59733 7.70354 7.73198 7.78805 8.30590 8.45274 9.20850
9.83974 10.40531 11.29244
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.019536 B = 0.002236 C = 0.002174
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1432.934037 B =12517.984148 C =12876.504031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C 0.194 3.806
3 N -0.486 5.486
4 C 0.183 3.817
5 C -0.112 4.112
6 C -0.173 4.173
7 C -0.160 4.160
8 C -0.187 4.187
9 C -0.036 4.036
10 C -0.191 4.191
11 C 0.559 3.441
12 O -0.526 6.526
13 N -0.718 5.718
14 C 0.150 3.850
15 H 0.088 0.912
16 C -0.147 4.147
17 C 0.173 3.827
18 N -0.585 5.585
19 C -0.253 4.253
20 H 0.065 0.935
21 C 0.003 3.997
22 N -0.901 5.901
23 Si 0.903 3.097
24 H -0.284 1.284
25 H -0.291 1.291
26 H -0.283 1.283
27 C 0.170 3.830
28 H 0.066 0.934
29 C -0.163 4.163
30 C -0.133 4.133
31 H 0.084 0.916
32 H 0.067 0.933
33 H 0.105 0.895
34 H 0.124 0.876
35 H 0.100 0.900
36 H 0.103 0.897
37 H 0.102 0.898
38 H 0.096 0.904
39 H 0.141 0.859
40 H 0.140 0.860
41 H 0.392 0.608
42 H 0.054 0.946
43 H 0.053 0.947
44 H 0.090 0.910
45 H 0.022 0.978
46 H 0.255 0.745
47 H 0.049 0.951
48 H 0.036 0.964
49 H 0.055 0.945
50 H 0.055 0.945
51 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.443 21.467 -5.597 24.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.056 3.944
3 N -0.195 5.195
4 C 0.045 3.955
5 C -0.131 4.131
6 C -0.210 4.210
7 C -0.197 4.197
8 C -0.207 4.207
9 C -0.062 4.062
10 C -0.196 4.196
11 C 0.345 3.655
12 O -0.404 6.404
13 N -0.368 5.368
14 C 0.047 3.953
15 H 0.106 0.894
16 C -0.187 4.187
17 C 0.047 3.953
18 N -0.306 5.306
19 C -0.383 4.383
20 H 0.083 0.917
21 C -0.196 4.196
22 N -0.545 5.545
23 Si 0.732 3.268
24 H -0.211 1.211
25 H -0.217 1.217
26 H -0.209 1.209
27 C 0.062 3.938
28 H 0.084 0.916
29 C -0.222 4.222
30 C -0.173 4.173
31 H 0.102 0.898
32 H 0.086 0.914
33 H 0.123 0.877
34 H 0.142 0.858
35 H 0.119 0.881
36 H 0.121 0.879
37 H 0.120 0.880
38 H 0.114 0.886
39 H 0.158 0.842
40 H 0.157 0.843
41 H 0.226 0.774
42 H 0.072 0.928
43 H 0.071 0.929
44 H 0.109 0.891
45 H 0.040 0.960
46 H 0.065 0.935
47 H 0.068 0.932
48 H 0.055 0.945
49 H 0.074 0.926
50 H 0.074 0.926
51 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 9.948 22.105 -5.381 24.831
hybrid contribution 1.370 -1.517 0.538 2.114
sum 11.318 20.588 -4.842 23.988
Atomic orbital electron populations
1.21068 0.87283 1.03822 1.04465 1.21537 0.97611 0.86236 0.89026
1.67355 1.09058 1.28908 1.14172 1.20525 0.89200 0.93696 0.92073
1.20821 0.96342 0.94934 1.00979 1.23118 0.90891 1.03550 1.03416
1.22980 1.02322 1.01388 0.93051 1.21847 1.01661 0.92308 1.04884
1.21760 0.93239 0.98672 0.92573 1.20917 0.94341 0.95464 1.08905
1.17951 0.87188 0.83287 0.77093 1.90743 1.13423 1.86909 1.49323
1.46273 1.10598 1.06421 1.73534 1.21154 0.95919 0.80347 0.97858
0.89426 1.22579 1.01391 1.00204 0.94547 1.20758 0.91670 0.84872
0.97983 1.44154 1.67553 1.12665 1.06255 1.19115 1.06798 0.94179
1.18192 0.91731 1.25063 0.94831 0.98078 1.01586 1.70007 1.08287
1.43083 1.33105 0.86374 0.78022 0.82446 0.79908 1.21103 1.21666
1.20916 1.20437 0.93579 0.92704 0.87104 0.91629 1.22308 1.00160
1.01852 0.97893 1.22307 0.99468 0.96945 0.98547 0.89754 0.91385
0.87692 0.85829 0.88140 0.87875 0.87974 0.88566 0.84153 0.84274
0.77378 0.92752 0.92863 0.89142 0.96030 0.93535 0.93169 0.94506
0.92578 0.92588 0.91917
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.39 8.88 36.01 0.32 -1.07 16
2 C 0.19 2.57 6.82 -82.17 -0.56 2.01 16
3 N -0.49 -6.14 10.17 -5.42 -0.06 -6.20 16
4 C 0.18 1.90 6.46 -82.51 -0.53 1.37 16
5 C -0.11 -0.87 6.21 -91.77 -0.57 -1.44 16
6 C -0.17 -0.94 9.79 -26.73 -0.26 -1.20 16
7 C -0.16 -1.04 10.23 -26.73 -0.27 -1.32 16
8 C -0.19 -1.68 9.34 -39.49 -0.37 -2.05 16
9 C -0.04 -0.36 9.63 -38.87 -0.37 -0.73 16
10 C -0.19 -2.43 5.89 -104.82 -0.62 -3.05 16
11 C 0.56 8.31 7.67 -12.33 -0.09 8.22 16
12 O -0.53 -9.38 13.04 5.32 0.07 -9.31 16
13 N -0.72 -9.88 5.03 -54.71 -0.28 -10.16 16
14 C 0.15 2.52 2.21 -67.89 -0.15 2.37 16
15 H 0.09 1.65 5.92 -51.93 -0.31 1.34 16
16 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16
17 C 0.17 4.11 4.88 -3.71 -0.02 4.09 16
18 N -0.58 -14.02 2.70 -164.77 -0.45 -14.46 16
19 C -0.25 -6.73 9.59 -15.06 -0.14 -6.87 16
20 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16
21 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16
22 N -0.90 -25.85 11.12 55.49 0.62 -25.23 16
23 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16
24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16
25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16
26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
27 C 0.17 3.36 3.29 -67.60 -0.22 3.13 16
28 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16
29 C -0.16 -3.07 9.03 37.16 0.34 -2.73 16
30 C -0.13 -2.14 5.02 -26.61 -0.13 -2.27 16
31 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16
32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.10 1.47 5.86 -51.93 -0.30 1.16 16
34 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16
35 H 0.10 0.49 6.38 -51.93 -0.33 0.16 16
36 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16
37 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16
38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16
39 H 0.14 0.86 6.23 -52.49 -0.33 0.54 16
40 H 0.14 1.00 6.57 -52.48 -0.34 0.66 16
41 H 0.39 4.22 6.75 -40.82 -0.28 3.95 16
42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16
43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16
44 H 0.09 2.42 6.01 -51.93 -0.31 2.11 16
45 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16
46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
47 H 0.05 0.98 5.73 -51.93 -0.30 0.68 16
48 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
49 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16
50 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
51 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
LS Contribution 397.29 15.07 5.99 5.99
Total: -1.00 -31.08 397.29 -10.96 -42.03
By element:
Atomic # 1 Polarization: 13.42 SS G_CDS: -7.92 Total: 5.50 kcal
Atomic # 6 Polarization: -0.64 SS G_CDS: -3.90 Total: -4.55 kcal
Atomic # 7 Polarization: -55.89 SS G_CDS: -0.16 Total: -56.05 kcal
Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.31 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -31.08 -10.96 -42.03 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000947736415.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.347 kcal
(2) G-P(sol) polarization free energy of solvation -31.076 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.272 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.313 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds