Wall clock time and date at job start Sat Apr 11 2020 07:00:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.31693 * 119.72031 * 2 1
4 4 C 1.31918 * 121.88478 * 179.97438 * 3 2 1
5 5 C 1.50700 * 119.46293 * 180.02562 * 4 3 2
6 6 C 1.53008 * 117.49871 * 163.64355 * 5 4 3
7 7 C 1.53002 * 117.49891 * 95.02270 * 5 4 3
8 8 C 1.38359 * 121.07997 * 0.04526 * 4 3 2
9 9 C 1.38356 * 119.29770 * 359.97438 * 8 4 3
10 10 C 1.39529 * 119.71701 * 180.02562 * 2 1 3
11 11 C 1.47843 * 120.55466 * 0.25277 * 10 2 1
12 12 O 1.21547 * 120.00238 * 353.35639 * 11 10 2
13 13 N 1.34774 * 119.99556 * 173.35695 * 11 10 2
14 14 C 1.46503 * 120.00106 * 179.97438 * 13 11 10
15 15 H 1.09000 * 109.45525 * 35.00412 * 14 13 11
16 16 C 1.53032 * 109.46310 * 275.03130 * 14 13 11
17 17 C 1.53200 * 109.31257 * 178.61070 * 16 14 13
18 18 N 1.46928 * 108.77327 * 54.63488 * 17 16 14
19 19 C 1.36935 * 120.62909 * 126.36825 * 18 17 16
20 20 H 1.08001 * 120.00237 * 208.00084 * 19 18 17
21 21 C 1.38816 * 119.99737 * 28.00156 * 19 18 17
22 22 N 1.31615 * 119.99947 * 15.93910 * 21 19 18
23 23 Si 1.86797 * 119.99875 * 195.93801 * 21 19 18
24 24 H 1.48504 * 109.47106 * 60.00215 * 23 21 19
25 25 H 1.48498 * 109.47307 * 179.97438 * 23 21 19
26 26 H 1.48505 * 109.47242 * 300.00199 * 23 21 19
27 27 C 1.46925 * 118.73978 * 306.39301 * 18 17 16
28 28 H 1.08996 * 109.58465 * 173.53548 * 27 18 17
29 29 C 1.53004 * 109.58407 * 293.82048 * 27 18 17
30 30 C 1.53041 * 109.45890 * 154.97139 * 14 13 11
31 31 H 1.09001 * 109.47016 * 263.30737 * 1 2 3
32 32 H 1.08997 * 109.46903 * 23.31181 * 1 2 3
33 33 H 1.09003 * 109.46912 * 143.30914 * 1 2 3
34 34 H 1.08995 * 115.55158 * 309.35133 * 5 4 3
35 35 H 1.08997 * 117.49803 * 0.02562 * 6 5 4
36 36 H 1.08994 * 117.49357 * 145.02268 * 6 5 4
37 37 H 1.09001 * 117.49550 * 214.97929 * 7 5 4
38 38 H 1.08999 * 117.49751 * 359.97438 * 7 5 4
39 39 H 1.07997 * 120.34829 * 179.97438 * 8 4 3
40 40 H 1.08003 * 120.84956 * 179.97438 * 9 8 4
41 41 H 0.97007 * 120.00223 * 0.02562 * 13 11 10
42 42 H 1.08992 * 109.49988 * 298.56361 * 16 14 13
43 43 H 1.09000 * 109.49801 * 58.66507 * 16 14 13
44 44 H 1.08995 * 109.58603 * 174.42249 * 17 16 14
45 45 H 1.08995 * 109.58336 * 294.70644 * 17 16 14
46 46 H 0.97002 * 119.99887 * 180.02562 * 22 21 19
47 47 H 1.09004 * 109.47117 * 60.00276 * 29 27 18
48 48 H 1.09000 * 109.46569 * 179.97438 * 29 27 18
49 49 H 1.08993 * 109.46984 * 300.00126 * 29 27 18
50 50 H 1.08995 * 109.50019 * 301.34625 * 30 14 13
51 51 H 1.09001 * 109.49628 * 61.44398 * 30 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1599 1.1437 0.0000
4 6 3.4781 1.1935 0.0005
5 6 4.1693 2.5327 0.0011
6 6 5.6504 2.5631 0.3838
7 6 4.5984 3.1057 1.3533
8 6 4.2366 0.0364 0.0001
9 6 3.5987 -1.1913 -0.0003
10 6 2.1987 -1.2118 -0.0005
11 6 1.4655 -2.4956 -0.0067
12 8 0.2558 -2.5053 0.1104
13 7 2.1387 -3.6553 -0.1422
14 6 1.4124 -4.9276 -0.1478
15 1 0.4487 -4.7933 -0.6390
16 6 1.1899 -5.3940 1.2926
17 6 0.4001 -6.7067 1.2838
18 7 1.1065 -7.6779 0.4373
19 6 1.4382 -8.9148 0.9223
20 1 2.2970 -9.4373 0.5273
21 6 0.6705 -9.4972 1.9215
22 7 -0.5312 -9.0295 2.1852
23 14 1.3429 -10.9449 2.8918
24 1 2.5895 -10.5375 3.5886
25 1 0.3364 -11.3800 3.8932
26 1 1.6378 -12.0676 1.9656
27 6 1.4507 -7.2966 -0.9392
28 1 2.0661 -8.0746 -1.3909
29 6 0.1701 -7.1161 -1.7569
30 6 2.2288 -5.9774 -0.9052
31 1 -0.3633 -0.1198 1.0207
32 1 -0.3633 0.9438 -0.4067
33 1 -0.3633 -0.8241 -0.6140
34 1 3.8311 3.2366 -0.7593
35 1 6.1249 1.6145 0.6348
36 1 6.2868 3.2871 -0.1249
37 1 4.5428 4.1866 1.4823
38 1 4.3804 2.5142 2.2425
39 1 5.3152 0.0909 0.0001
40 1 4.1661 -2.1103 -0.0010
41 1 3.1043 -3.6476 -0.2353
42 1 2.1535 -5.5525 1.7767
43 1 0.6285 -4.6355 1.8380
44 1 0.3244 -7.0944 2.2997
45 1 -0.5986 -6.5295 0.8849
46 1 -1.0674 -9.4362 2.8837
47 1 -0.4414 -6.3342 -1.3065
48 1 0.4277 -6.8328 -2.7774
49 1 -0.3880 -8.0522 -1.7691
50 1 2.4072 -5.6340 -1.9242
51 1 3.1826 -6.1303 -0.4002
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000947736415.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:04
Heat of formation + Delta-G solvation = 25.537691 kcal
Electronic energy + Delta-G solvation = -30066.738851 eV
Core-core repulsion = 26159.455520 eV
Total energy + Delta-G solvation = -3907.283331 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.99019 -40.67246 -39.30030 -37.87981 -36.16922 -34.59188 -33.80721 -33.21366
-32.37040 -31.24837 -28.96500 -28.31172 -26.53987 -25.97132 -23.92990 -23.72437
-23.44371 -22.88654 -22.03503 -21.32291 -20.16143 -19.10598 -18.32583 -18.02453
-17.31364 -16.85743 -16.65585 -16.30369 -15.94426 -15.86883 -15.52409 -15.49267
-14.99942 -14.93733 -14.66463 -14.28083 -14.21362 -14.11775 -13.91969 -13.86098
-13.47549 -13.16498 -13.00883 -12.91356 -12.75841 -12.62506 -12.53535 -12.30280
-12.27904 -12.04366 -12.00703 -11.75363 -11.64279 -11.48955 -11.39615 -11.11486
-10.91997 -10.89068 -10.54195 -10.41859 -10.09951 -9.75632 -8.66937 -7.84075
-5.29792 -0.43903 0.14843 1.48096 1.50237 1.56715 1.77603 2.06316
2.52783 2.60896 2.80823 3.14770 3.31547 3.54994 3.61780 3.66824
3.67219 3.85335 3.93892 3.96381 4.09709 4.10520 4.18026 4.30020
4.45066 4.45778 4.52833 4.56008 4.65081 4.70954 4.71797 4.76483
4.78821 4.85668 4.86302 4.90738 4.99081 5.07450 5.09299 5.12126
5.17070 5.18444 5.24912 5.26649 5.34894 5.45942 5.51013 5.57295
5.59902 5.69333 5.78279 6.42412 6.52114 6.87386 7.17306 7.19855
7.89370 8.41291 9.22133
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.019536 B = 0.002236 C = 0.002174
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1432.934037 B =12517.984148 C =12876.504031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 C 0.175 3.825
3 N -0.508 5.508
4 C 0.176 3.824
5 C -0.132 4.132
6 C -0.150 4.150
7 C -0.165 4.165
8 C -0.179 4.179
9 C -0.028 4.028
10 C -0.208 4.208
11 C 0.558 3.442
12 O -0.564 6.564
13 N -0.704 5.704
14 C 0.163 3.837
15 H 0.066 0.934
16 C -0.132 4.132
17 C 0.184 3.816
18 N -0.599 5.599
19 C -0.256 4.256
20 H 0.073 0.927
21 C -0.054 4.054
22 N -0.937 5.937
23 Si 0.966 3.034
24 H -0.277 1.277
25 H -0.300 1.300
26 H -0.274 1.274
27 C 0.160 3.840
28 H 0.071 0.929
29 C -0.154 4.154
30 C -0.118 4.118
31 H 0.075 0.925
32 H 0.076 0.924
33 H 0.088 0.912
34 H 0.124 0.876
35 H 0.112 0.888
36 H 0.122 0.878
37 H 0.113 0.887
38 H 0.086 0.914
39 H 0.177 0.823
40 H 0.171 0.829
41 H 0.411 0.589
42 H 0.060 0.940
43 H 0.043 0.957
44 H 0.054 0.946
45 H -0.009 1.009
46 H 0.247 0.753
47 H 0.034 0.966
48 H 0.074 0.926
49 H 0.028 0.972
50 H 0.092 0.908
51 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.704 22.676 -6.810 28.411
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.037 3.963
3 N -0.218 5.218
4 C 0.038 3.962
5 C -0.151 4.151
6 C -0.187 4.187
7 C -0.202 4.202
8 C -0.198 4.198
9 C -0.054 4.054
10 C -0.213 4.213
11 C 0.346 3.654
12 O -0.444 6.444
13 N -0.355 5.355
14 C 0.059 3.941
15 H 0.085 0.915
16 C -0.172 4.172
17 C 0.058 3.942
18 N -0.321 5.321
19 C -0.386 4.386
20 H 0.090 0.910
21 C -0.249 4.249
22 N -0.583 5.583
23 Si 0.794 3.206
24 H -0.203 1.203
25 H -0.226 1.226
26 H -0.200 1.200
27 C 0.053 3.947
28 H 0.089 0.911
29 C -0.213 4.213
30 C -0.157 4.157
31 H 0.093 0.907
32 H 0.095 0.905
33 H 0.107 0.893
34 H 0.142 0.858
35 H 0.130 0.870
36 H 0.140 0.860
37 H 0.131 0.869
38 H 0.104 0.896
39 H 0.194 0.806
40 H 0.188 0.812
41 H 0.249 0.751
42 H 0.078 0.922
43 H 0.061 0.939
44 H 0.072 0.928
45 H 0.009 0.991
46 H 0.056 0.944
47 H 0.053 0.947
48 H 0.093 0.907
49 H 0.047 0.953
50 H 0.110 0.890
51 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 14.270 23.333 -6.629 28.142
hybrid contribution 0.075 -1.784 0.872 1.987
sum 14.345 21.548 -5.756 26.519
Atomic orbital electron populations
1.20928 0.88003 1.03519 1.03597 1.21550 0.97637 0.86978 0.90130
1.67358 1.10584 1.28655 1.15185 1.21093 0.88663 0.95618 0.90810
1.20896 0.98305 0.93990 1.01904 1.23261 0.89544 1.04300 1.01547
1.23045 1.03020 1.01977 0.92208 1.22233 1.03309 0.91231 1.03011
1.22110 0.91896 1.00457 0.90937 1.20735 0.95670 0.93768 1.11163
1.18316 0.86853 0.84155 0.76083 1.90738 1.15284 1.87487 1.50904
1.45927 1.11398 1.04919 1.73263 1.20756 0.95861 0.81982 0.95538
0.91544 1.22326 1.00516 0.97510 0.96844 1.20422 0.91205 0.86830
0.95783 1.44363 1.67421 1.12057 1.08293 1.19501 1.06510 0.94821
1.17781 0.90979 1.25825 0.95121 1.00932 1.03049 1.70188 1.09676
1.44722 1.33742 0.85362 0.77137 0.79707 0.78352 1.20342 1.22643
1.20011 1.20716 0.94252 0.94917 0.84816 0.91085 1.22197 0.99292
0.99939 0.99895 1.22138 0.98765 0.94187 1.00645 0.90674 0.90528
0.89335 0.85813 0.87020 0.86024 0.86904 0.89569 0.80606 0.81155
0.75094 0.92153 0.93875 0.92801 0.99138 0.94357 0.94653 0.90719
0.95322 0.88997 0.90619
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -2.77 8.88 71.24 0.63 -2.13 16
2 C 0.18 4.63 6.82 42.89 0.29 4.93 16
3 N -0.51 -12.54 10.17 -171.05 -1.74 -14.28 16
4 C 0.18 3.28 6.46 42.57 0.28 3.56 16
5 C -0.13 -1.73 6.21 -11.54 -0.07 -1.81 16
6 C -0.15 -1.05 9.79 30.60 0.30 -0.75 16
7 C -0.16 -1.76 10.23 30.60 0.31 -1.45 16
8 C -0.18 -2.54 9.34 22.33 0.21 -2.33 16
9 C -0.03 -0.46 9.63 22.73 0.22 -0.24 16
10 C -0.21 -5.04 5.89 -19.99 -0.12 -5.15 16
11 C 0.56 16.25 7.67 86.79 0.67 16.91 16
12 O -0.56 -20.75 13.04 -3.86 -0.05 -20.80 16
13 N -0.70 -17.82 5.03 -445.30 -2.24 -20.06 16
14 C 0.16 5.28 2.21 45.02 0.10 5.38 16
15 H 0.07 2.50 5.92 -2.39 -0.01 2.49 16
16 C -0.13 -5.18 5.65 30.67 0.17 -5.01 16
17 C 0.18 9.10 4.88 86.36 0.42 9.53 16
18 N -0.60 -28.99 2.70 -675.21 -1.82 -30.81 16
19 C -0.26 -13.66 9.59 84.03 0.81 -12.85 16
20 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16
21 C -0.05 -3.01 4.95 84.86 0.42 -2.59 16
22 N -0.94 -56.11 11.12 21.65 0.24 -55.87 16
23 Si 0.97 44.67 29.58 68.60 2.03 46.70 16
24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16
25 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16
26 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16
27 C 0.16 6.09 3.29 44.98 0.15 6.24 16
28 H 0.07 2.63 7.93 -2.39 -0.02 2.62 16
29 C -0.15 -5.73 9.03 71.98 0.65 -5.08 16
30 C -0.12 -3.43 5.02 30.67 0.15 -3.28 16
31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16
32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
33 H 0.09 2.64 5.86 -2.39 -0.01 2.63 16
34 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16
35 H 0.11 0.54 6.38 -2.39 -0.02 0.52 16
36 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16
37 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16
38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16
39 H 0.18 1.21 6.23 -2.91 -0.02 1.19 16
40 H 0.17 1.60 6.57 -2.91 -0.02 1.58 16
41 H 0.41 7.22 6.75 -92.70 -0.63 6.60 16
42 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16
43 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16
44 H 0.05 3.04 6.01 -2.39 -0.01 3.03 16
45 H -0.01 -0.52 7.51 -2.39 -0.02 -0.53 16
46 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16
47 H 0.03 1.40 5.73 -2.38 -0.01 1.39 16
48 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16
49 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16
50 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16
51 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16
Total: -1.00 -72.01 397.29 2.33 -69.68
By element:
Atomic # 1 Polarization: 21.25 SS G_CDS: 0.32 Total: 21.57 kcal
Atomic # 6 Polarization: -1.73 SS G_CDS: 5.59 Total: 3.86 kcal
Atomic # 7 Polarization: -115.46 SS G_CDS: -5.56 Total: -121.02 kcal
Atomic # 8 Polarization: -20.75 SS G_CDS: -0.05 Total: -20.80 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal
Total: -72.01 2.33 -69.68 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000947736415.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.223 kcal
(2) G-P(sol) polarization free energy of solvation -72.011 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.212 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.538 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds