Wall clock time and date at job start Sat Apr 11 2020 06:59:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86800 * 120.00393 * 2 1
4 4 H 1.48497 * 109.46834 * 269.99931 * 3 2 1
5 5 H 1.48497 * 109.47161 * 29.99839 * 3 2 1
6 6 H 1.48494 * 109.47161 * 149.99891 * 3 2 1
7 7 C 1.38816 * 119.99590 * 179.97438 * 2 1 3
8 8 H 1.07992 * 119.99971 * 197.65433 * 7 2 1
9 9 N 1.36940 * 119.99922 * 17.64463 * 7 2 1
10 10 C 1.46893 * 120.46186 * 28.45134 * 9 7 2
11 11 C 1.53361 * 108.74157 * 124.38346 * 10 9 7
12 12 C 1.52558 * 109.12492 * 52.26014 * 11 10 9
13 13 C 1.52963 * 114.06072 * 75.54000 * 12 11 10
14 14 N 1.47159 * 87.84991 * 139.44074 * 13 12 11
15 15 C 1.34783 * 135.99891 * 153.33863 * 14 13 12
16 16 O 1.21625 * 119.99609 * 359.97438 * 15 14 13
17 17 C 1.47260 * 119.99704 * 179.97438 * 15 14 13
18 18 C 1.46743 * 126.93042 * 359.97438 * 17 15 14
19 19 C 1.34057 * 106.31512 * 179.97438 * 18 17 15
20 20 N 1.37084 * 109.04293 * 0.03973 * 19 18 17
21 21 C 1.34570 * 109.94658 * 359.94525 * 20 19 18
22 22 C 1.47032 * 123.95294 * 179.90763 * 20 19 18
23 23 C 1.53136 * 108.84354 * 342.48279 * 22 20 19
24 24 C 1.53128 * 109.59655 * 51.19309 * 23 22 20
25 25 C 1.51094 * 126.73116 * 180.29949 * 19 18 17
26 26 C 1.47168 * 88.00137 * 333.59288 * 14 13 12
27 27 C 1.52551 * 113.43082 * 302.66786 * 12 11 10
28 28 C 1.46879 * 120.46340 * 208.46912 * 9 7 2
29 29 H 0.96999 * 119.99535 * 0.02562 * 1 2 3
30 30 H 1.09004 * 109.59200 * 4.60788 * 10 9 7
31 31 H 1.09001 * 109.59482 * 244.15798 * 10 9 7
32 32 H 1.09003 * 109.52951 * 292.36334 * 11 10 9
33 33 H 1.08995 * 109.52933 * 172.15658 * 11 10 9
34 34 H 1.08997 * 113.48658 * 24.69367 * 13 12 11
35 35 H 1.09000 * 113.48615 * 254.18630 * 13 12 11
36 36 H 1.07999 * 126.84086 * 359.97438 * 18 17 15
37 37 H 1.08001 * 125.72602 * 180.02562 * 21 20 19
38 38 H 1.09001 * 109.57568 * 102.29375 * 22 20 19
39 39 H 1.09005 * 109.57602 * 222.67333 * 22 20 19
40 40 H 1.09003 * 109.45134 * 171.22775 * 23 22 20
41 41 H 1.08995 * 109.45141 * 291.15241 * 23 22 20
42 42 H 1.08997 * 109.52913 * 49.73231 * 24 23 22
43 43 H 1.09001 * 109.52626 * 169.86664 * 24 23 22
44 44 H 1.08994 * 109.72407 * 283.64390 * 25 19 18
45 45 H 1.09006 * 109.71399 * 44.29579 * 25 19 18
46 46 H 1.09000 * 113.48862 * 141.16007 * 26 14 13
47 47 H 1.09007 * 113.48592 * 271.66462 * 26 14 13
48 48 H 1.09004 * 109.52382 * 177.21754 * 27 12 11
49 49 H 1.08997 * 109.52966 * 297.42723 * 27 12 11
50 50 H 1.08999 * 109.59434 * 355.38851 * 28 9 7
51 51 H 1.09001 * 109.58941 * 115.82770 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4979 2.0463 -1.4001
5 1 1.4479 2.6526 0.7000
6 1 3.5478 1.4400 0.7000
7 6 2.0102 -1.2022 0.0005
8 1 3.0520 -1.2242 0.2842
9 7 1.3738 -2.3604 -0.3584
10 6 0.2446 -2.3293 -1.2975
11 6 0.5539 -3.2668 -2.4711
12 6 0.9413 -4.6382 -1.9267
13 6 -0.2411 -5.4632 -1.4158
14 7 0.3850 -6.6420 -2.0353
15 6 0.3716 -7.9725 -1.8203
16 8 -0.2902 -8.4347 -0.9105
17 6 1.1581 -8.8664 -2.6868
18 6 2.0037 -8.4756 -3.8206
19 6 2.5235 -9.6098 -4.3112
20 7 2.0652 -10.6687 -3.5710
21 6 1.2478 -10.2283 -2.5969
22 6 2.4301 -12.0696 -3.8282
23 6 2.9993 -12.1802 -5.2456
24 6 4.1002 -11.1337 -5.4400
25 6 3.4686 -9.7379 -5.4831
26 6 1.0374 -5.7303 -2.9888
27 6 2.1307 -4.5981 -0.9723
28 6 1.8103 -3.6509 0.1905
29 1 -0.4849 0.8401 -0.0004
30 1 0.1051 -1.3137 -1.6679
31 1 -0.6610 -2.6638 -0.7914
32 1 1.3797 -2.8598 -3.0548
33 1 -0.3286 -3.3619 -3.1038
34 1 -1.1923 -5.1869 -1.8706
35 1 -0.2935 -5.5201 -0.3285
36 1 2.1735 -7.4739 -4.1869
37 1 0.7465 -10.8465 -1.8669
38 1 3.1819 -12.3895 -3.1068
39 1 1.5451 -12.6997 -3.7399
40 1 3.4157 -13.1767 -5.3928
41 1 2.2037 -12.0089 -5.9706
42 1 4.8041 -11.1867 -4.6095
43 1 4.6254 -11.3269 -6.3754
44 1 2.9167 -9.6183 -6.4154
45 1 4.2450 -8.9759 -5.4143
46 1 2.0627 -6.0127 -3.2278
47 1 0.4374 -5.5276 -3.8760
48 1 2.3210 -5.5991 -0.5850
49 1 3.0119 -4.2381 -1.5032
50 1 2.7022 -3.5059 0.8001
51 1 1.0136 -4.0771 0.8001
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001050780346.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:41
Heat of formation + Delta-G solvation = 68.194048 kcal
Electronic energy + Delta-G solvation = -30354.190146 eV
Core-core repulsion = 26448.756533 eV
Total energy + Delta-G solvation = -3905.433613 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.73082 -40.47609 -37.95616 -36.13063 -35.76534 -33.10157 -32.36452 -30.66785
-29.96375 -29.43868 -27.80470 -27.03795 -25.97417 -24.61546 -24.08567 -22.38080
-22.01041 -21.86864 -20.61203 -19.24811 -18.33378 -17.93449 -17.21647 -16.56707
-16.11645 -15.98731 -15.49918 -15.21153 -14.79798 -14.67205 -14.26122 -14.12471
-13.97686 -13.78702 -13.59326 -13.44537 -13.29510 -13.04323 -12.82372 -12.55446
-12.41537 -12.10584 -11.91026 -11.67615 -11.57471 -11.42680 -11.34283 -11.33981
-11.26562 -11.00645 -10.70455 -10.39539 -10.23722 -9.99979 -9.77098 -9.69565
-9.53245 -9.24604 -8.73862 -8.43298 -8.40465 -8.16353 -6.60773 -5.74566
-3.16967 1.78152 2.27958 2.52262 3.24864 3.40571 3.47679 3.48838
3.73944 4.02466 4.16035 4.25051 4.41905 4.53394 4.68995 4.74103
4.81813 4.90609 4.95890 4.97937 5.17703 5.21826 5.25751 5.32397
5.38168 5.38515 5.43424 5.50296 5.64668 5.65785 5.68006 5.73787
5.78434 5.80638 5.85830 6.08133 6.14110 6.19388 6.29036 6.36220
6.55017 6.65424 6.68603 6.72680 6.74666 6.90329 6.94170 7.04365
7.07623 7.39692 7.70487 7.84253 8.09950 8.50575 8.54578 9.26356
9.89901 10.46709 11.33475
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.022963 B = 0.002264 C = 0.002156
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1219.037224 B =12363.622733 C =12981.178992
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.001 3.999
3 Si 0.901 3.099
4 H -0.288 1.288
5 H -0.292 1.292
6 H -0.280 1.280
7 C -0.250 4.250
8 H 0.065 0.935
9 N -0.591 5.591
10 C 0.171 3.829
11 C -0.124 4.124
12 C -0.076 4.076
13 C 0.116 3.884
14 N -0.635 5.635
15 C 0.616 3.384
16 O -0.562 6.562
17 C -0.221 4.221
18 C -0.164 4.164
19 C 0.012 3.988
20 N -0.444 5.444
21 C 0.073 3.927
22 C 0.102 3.898
23 C -0.134 4.134
24 C -0.125 4.125
25 C -0.052 4.052
26 C 0.103 3.897
27 C -0.105 4.105
28 C 0.147 3.853
29 H 0.253 0.747
30 H 0.089 0.911
31 H 0.018 0.982
32 H 0.062 0.938
33 H 0.053 0.947
34 H 0.080 0.920
35 H 0.077 0.923
36 H 0.148 0.852
37 H 0.172 0.828
38 H 0.082 0.918
39 H 0.089 0.911
40 H 0.085 0.915
41 H 0.074 0.926
42 H 0.068 0.932
43 H 0.076 0.924
44 H 0.079 0.921
45 H 0.087 0.913
46 H 0.076 0.924
47 H 0.080 0.920
48 H 0.052 0.948
49 H 0.063 0.937
50 H 0.054 0.946
51 H 0.018 0.982
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.347 -23.863 -14.250 28.510
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C -0.197 4.197
3 Si 0.731 3.269
4 H -0.215 1.215
5 H -0.219 1.219
6 H -0.205 1.205
7 C -0.380 4.380
8 H 0.082 0.918
9 N -0.313 5.313
10 C 0.045 3.955
11 C -0.164 4.164
12 C -0.077 4.077
13 C -0.006 4.006
14 N -0.368 5.368
15 C 0.408 3.592
16 O -0.442 6.442
17 C -0.231 4.231
18 C -0.187 4.187
19 C -0.096 4.096
20 N -0.121 5.121
21 C -0.062 4.062
22 C -0.019 4.019
23 C -0.171 4.171
24 C -0.163 4.163
25 C -0.089 4.089
26 C -0.021 4.021
27 C -0.144 4.144
28 C 0.020 3.980
29 H 0.063 0.937
30 H 0.108 0.892
31 H 0.036 0.964
32 H 0.080 0.920
33 H 0.071 0.929
34 H 0.099 0.901
35 H 0.095 0.905
36 H 0.166 0.834
37 H 0.189 0.811
38 H 0.101 0.899
39 H 0.107 0.893
40 H 0.104 0.896
41 H 0.093 0.907
42 H 0.087 0.913
43 H 0.094 0.906
44 H 0.098 0.902
45 H 0.105 0.895
46 H 0.094 0.906
47 H 0.098 0.902
48 H 0.071 0.929
49 H 0.082 0.918
50 H 0.073 0.927
51 H 0.036 0.964
Dipole moment (debyes) X Y Z Total
from point charges 5.984 -24.549 -13.771 28.777
hybrid contribution 0.269 0.777 -0.007 0.822
sum 6.253 -23.772 -13.778 28.179
Atomic orbital electron populations
1.70040 1.05222 1.25427 1.53948 1.25042 0.95260 0.98378 1.01041
0.86305 0.79131 0.83794 0.77638 1.21492 1.21864 1.20499 1.19198
0.92771 0.84950 1.41084 0.91761 1.44029 1.37085 1.01463 1.48742
1.20789 0.88754 0.98587 0.87357 1.22063 1.00094 0.94092 1.00125
1.21653 0.96163 0.94265 0.95661 1.23036 0.96793 0.80863 0.99954
1.49350 1.48947 1.03827 1.34718 1.16847 0.80077 0.79333 0.82910
1.90752 1.45060 1.74930 1.33488 1.20241 1.08000 0.92665 1.02194
1.21908 1.01361 0.97495 0.97965 1.20302 1.03986 0.86540 0.98771
1.43900 1.36750 1.06661 1.24826 1.21607 0.96299 0.94481 0.93776
1.22070 1.01384 0.80018 0.98421 1.21841 0.99367 1.00629 0.95277
1.21615 0.97599 0.94157 1.02935 1.20334 0.96484 0.97736 0.94377
1.23240 0.97984 0.86948 0.93886 1.21690 0.95752 0.99327 0.97633
1.20886 0.97542 0.86861 0.92662 0.93680 0.89239 0.96356 0.91966
0.92877 0.90143 0.90463 0.83444 0.81051 0.89935 0.89293 0.89603
0.90697 0.91330 0.90571 0.90219 0.89476 0.90592 0.90156 0.92934
0.91836 0.92732 0.96374
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.00 11.21 55.49 0.62 -25.38 16
2 C 0.00 0.04 4.89 -17.43 -0.09 -0.05 16
3 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16
4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
7 C -0.25 -6.80 9.56 -15.06 -0.14 -6.95 16
8 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16
9 N -0.59 -14.57 2.96 -172.18 -0.51 -15.08 16
10 C 0.17 3.94 5.27 -3.64 -0.02 3.92 16
11 C -0.12 -2.20 5.31 -26.77 -0.14 -2.34 16
12 C -0.08 -1.25 0.83 -155.17 -0.13 -1.38 16
13 C 0.12 1.95 7.57 -8.20 -0.06 1.89 16
14 N -0.63 -10.32 3.46 -186.65 -0.65 -10.97 16
15 C 0.62 10.80 8.06 -12.59 -0.10 10.70 16
16 O -0.56 -11.67 17.69 5.26 0.09 -11.57 16
17 C -0.22 -3.19 6.29 -103.32 -0.65 -3.84 16
18 C -0.16 -1.98 10.03 -37.62 -0.38 -2.36 16
19 C 0.01 0.12 6.53 -81.52 -0.53 -0.42 16
20 N -0.44 -4.26 3.11 -111.87 -0.35 -4.61 16
21 C 0.07 0.89 11.18 -16.88 -0.19 0.70 16
22 C 0.10 0.58 6.89 -3.68 -0.03 0.55 16
23 C -0.13 -0.57 5.91 -26.60 -0.16 -0.73 16
24 C -0.13 -0.61 5.96 -26.52 -0.16 -0.76 16
25 C -0.05 -0.34 6.26 -27.55 -0.17 -0.51 16
26 C 0.10 1.41 6.29 -8.36 -0.05 1.36 16
27 C -0.10 -1.85 5.25 -26.78 -0.14 -1.99 16
28 C 0.15 3.12 6.41 -3.65 -0.02 3.10 16
29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16
30 H 0.09 2.32 5.97 -51.93 -0.31 2.01 16
31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
33 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16
34 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16
35 H 0.08 1.44 7.53 -51.93 -0.39 1.05 16
36 H 0.15 1.63 5.51 -52.49 -0.29 1.34 16
37 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16
38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16
39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
40 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16
41 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16
42 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16
43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16
44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16
46 H 0.08 0.95 6.16 -51.93 -0.32 0.63 16
47 H 0.08 0.98 8.09 -51.92 -0.42 0.56 16
48 H 0.05 0.90 7.95 -51.93 -0.41 0.49 16
49 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
50 H 0.05 1.15 7.92 -51.93 -0.41 0.74 16
51 H 0.02 0.40 7.60 -51.93 -0.39 0.01 16
LS Contribution 394.46 15.07 5.94 5.94
Total: -1.00 -33.55 394.46 -11.44 -44.99
By element:
Atomic # 1 Polarization: 7.64 SS G_CDS: -8.41 Total: -0.76 kcal
Atomic # 6 Polarization: 4.04 SS G_CDS: -3.16 Total: 0.88 kcal
Atomic # 7 Polarization: -55.16 SS G_CDS: -0.88 Total: -56.04 kcal
Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.57 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -33.55 -11.44 -44.99 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001050780346.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.182 kcal
(2) G-P(sol) polarization free energy of solvation -33.547 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.441 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.988 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.194 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds