Wall clock time and date at job start Sat Apr 11 2020 06:59:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86800 * 120.00393 * 2 1
4 4 H 1.48497 * 109.46834 * 269.99931 * 3 2 1
5 5 H 1.48497 * 109.47161 * 29.99839 * 3 2 1
6 6 H 1.48494 * 109.47161 * 149.99891 * 3 2 1
7 7 C 1.38816 * 119.99590 * 179.97438 * 2 1 3
8 8 H 1.07992 * 119.99971 * 197.65433 * 7 2 1
9 9 N 1.36940 * 119.99922 * 17.64463 * 7 2 1
10 10 C 1.46893 * 120.46186 * 28.45134 * 9 7 2
11 11 C 1.53361 * 108.74157 * 124.38346 * 10 9 7
12 12 C 1.52558 * 109.12492 * 52.26014 * 11 10 9
13 13 C 1.52963 * 114.06072 * 75.54000 * 12 11 10
14 14 N 1.47159 * 87.84991 * 139.44074 * 13 12 11
15 15 C 1.34783 * 135.99891 * 153.33863 * 14 13 12
16 16 O 1.21625 * 119.99609 * 359.97438 * 15 14 13
17 17 C 1.47260 * 119.99704 * 179.97438 * 15 14 13
18 18 C 1.46743 * 126.93042 * 359.97438 * 17 15 14
19 19 C 1.34057 * 106.31512 * 179.97438 * 18 17 15
20 20 N 1.37084 * 109.04293 * 0.03973 * 19 18 17
21 21 C 1.34570 * 109.94658 * 359.94525 * 20 19 18
22 22 C 1.47032 * 123.95294 * 179.90763 * 20 19 18
23 23 C 1.53136 * 108.84354 * 342.48279 * 22 20 19
24 24 C 1.53128 * 109.59655 * 51.19309 * 23 22 20
25 25 C 1.51094 * 126.73116 * 180.29949 * 19 18 17
26 26 C 1.47168 * 88.00137 * 333.59288 * 14 13 12
27 27 C 1.52551 * 113.43082 * 302.66786 * 12 11 10
28 28 C 1.46879 * 120.46340 * 208.46912 * 9 7 2
29 29 H 0.96999 * 119.99535 * 0.02562 * 1 2 3
30 30 H 1.09004 * 109.59200 * 4.60788 * 10 9 7
31 31 H 1.09001 * 109.59482 * 244.15798 * 10 9 7
32 32 H 1.09003 * 109.52951 * 292.36334 * 11 10 9
33 33 H 1.08995 * 109.52933 * 172.15658 * 11 10 9
34 34 H 1.08997 * 113.48658 * 24.69367 * 13 12 11
35 35 H 1.09000 * 113.48615 * 254.18630 * 13 12 11
36 36 H 1.07999 * 126.84086 * 359.97438 * 18 17 15
37 37 H 1.08001 * 125.72602 * 180.02562 * 21 20 19
38 38 H 1.09001 * 109.57568 * 102.29375 * 22 20 19
39 39 H 1.09005 * 109.57602 * 222.67333 * 22 20 19
40 40 H 1.09003 * 109.45134 * 171.22775 * 23 22 20
41 41 H 1.08995 * 109.45141 * 291.15241 * 23 22 20
42 42 H 1.08997 * 109.52913 * 49.73231 * 24 23 22
43 43 H 1.09001 * 109.52626 * 169.86664 * 24 23 22
44 44 H 1.08994 * 109.72407 * 283.64390 * 25 19 18
45 45 H 1.09006 * 109.71399 * 44.29579 * 25 19 18
46 46 H 1.09000 * 113.48862 * 141.16007 * 26 14 13
47 47 H 1.09007 * 113.48592 * 271.66462 * 26 14 13
48 48 H 1.09004 * 109.52382 * 177.21754 * 27 12 11
49 49 H 1.08997 * 109.52966 * 297.42723 * 27 12 11
50 50 H 1.08999 * 109.59434 * 355.38851 * 28 9 7
51 51 H 1.09001 * 109.58941 * 115.82770 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4979 2.0463 -1.4001
5 1 1.4479 2.6526 0.7000
6 1 3.5478 1.4400 0.7000
7 6 2.0102 -1.2022 0.0005
8 1 3.0520 -1.2242 0.2842
9 7 1.3738 -2.3604 -0.3584
10 6 0.2446 -2.3293 -1.2975
11 6 0.5539 -3.2668 -2.4711
12 6 0.9413 -4.6382 -1.9267
13 6 -0.2411 -5.4632 -1.4158
14 7 0.3850 -6.6420 -2.0353
15 6 0.3716 -7.9725 -1.8203
16 8 -0.2902 -8.4347 -0.9105
17 6 1.1581 -8.8664 -2.6868
18 6 2.0037 -8.4756 -3.8206
19 6 2.5235 -9.6098 -4.3112
20 7 2.0652 -10.6687 -3.5710
21 6 1.2478 -10.2283 -2.5969
22 6 2.4301 -12.0696 -3.8282
23 6 2.9993 -12.1802 -5.2456
24 6 4.1002 -11.1337 -5.4400
25 6 3.4686 -9.7379 -5.4831
26 6 1.0374 -5.7303 -2.9888
27 6 2.1307 -4.5981 -0.9723
28 6 1.8103 -3.6509 0.1905
29 1 -0.4849 0.8401 -0.0004
30 1 0.1051 -1.3137 -1.6679
31 1 -0.6610 -2.6638 -0.7914
32 1 1.3797 -2.8598 -3.0548
33 1 -0.3286 -3.3619 -3.1038
34 1 -1.1923 -5.1869 -1.8706
35 1 -0.2935 -5.5201 -0.3285
36 1 2.1735 -7.4739 -4.1869
37 1 0.7465 -10.8465 -1.8669
38 1 3.1819 -12.3895 -3.1068
39 1 1.5451 -12.6997 -3.7399
40 1 3.4157 -13.1767 -5.3928
41 1 2.2037 -12.0089 -5.9706
42 1 4.8041 -11.1867 -4.6095
43 1 4.6254 -11.3269 -6.3754
44 1 2.9167 -9.6183 -6.4154
45 1 4.2450 -8.9759 -5.4143
46 1 2.0627 -6.0127 -3.2278
47 1 0.4374 -5.5276 -3.8760
48 1 2.3210 -5.5991 -0.5850
49 1 3.0119 -4.2381 -1.5032
50 1 2.7022 -3.5059 0.8001
51 1 1.0136 -4.0771 0.8001
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001050780346.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:40
Heat of formation + Delta-G solvation = 49.617462 kcal
Electronic energy + Delta-G solvation = -30354.995687 eV
Core-core repulsion = 26448.756533 eV
Total energy + Delta-G solvation = -3906.239154 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.55034 -41.77097 -39.32668 -37.51071 -36.66793 -34.26952 -33.67546 -32.26687
-31.45844 -30.58568 -28.59934 -28.40464 -27.18704 -26.00155 -25.11225 -23.98080
-23.22902 -22.44196 -22.17753 -20.17191 -19.59040 -19.15802 -18.32954 -18.04431
-17.30050 -16.86015 -16.76994 -16.66560 -16.21870 -15.66189 -15.37659 -15.15883
-14.98689 -14.94692 -14.74309 -14.65209 -14.38371 -14.36530 -13.96931 -13.84275
-13.62745 -13.36760 -13.14875 -13.03691 -12.88824 -12.70151 -12.54800 -12.42946
-12.22241 -12.00142 -11.92963 -11.79650 -11.77073 -11.71710 -11.35288 -11.25250
-11.11335 -10.76246 -10.46422 -9.79628 -9.46061 -9.08402 -8.62354 -7.83030
-5.28923 0.74589 1.45586 1.50146 1.50933 1.59940 1.73296 2.12136
2.54761 2.55671 3.26141 3.40312 3.59706 3.63295 3.73516 3.80538
3.83257 3.88102 3.99010 4.12883 4.13323 4.28098 4.39013 4.41654
4.46542 4.49506 4.56093 4.56572 4.62855 4.64872 4.74161 4.79356
4.83840 4.89300 4.91143 4.94534 4.95127 5.04685 5.09064 5.16178
5.16790 5.21884 5.29147 5.33923 5.37625 5.38782 5.57007 5.69643
5.80135 5.83838 6.11281 6.34678 6.44150 6.83611 7.19815 7.24273
7.90776 8.42585 9.22566
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.022963 B = 0.002264 C = 0.002156
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1219.037224 B =12363.622733 C =12981.178992
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.051 4.051
3 Si 0.967 3.033
4 H -0.282 1.282
5 H -0.298 1.298
6 H -0.271 1.271
7 C -0.260 4.260
8 H 0.065 0.935
9 N -0.607 5.607
10 C 0.175 3.825
11 C -0.107 4.107
12 C -0.075 4.075
13 C 0.110 3.890
14 N -0.637 5.637
15 C 0.608 3.392
16 O -0.610 6.610
17 C -0.256 4.256
18 C -0.182 4.182
19 C 0.019 3.981
20 N -0.437 5.437
21 C 0.072 3.928
22 C 0.091 3.909
23 C -0.129 4.129
24 C -0.124 4.124
25 C -0.053 4.053
26 C 0.120 3.880
27 C -0.090 4.090
28 C 0.145 3.855
29 H 0.249 0.751
30 H 0.058 0.942
31 H -0.006 1.006
32 H 0.068 0.932
33 H 0.079 0.921
34 H 0.091 0.909
35 H 0.049 0.951
36 H 0.156 0.844
37 H 0.177 0.823
38 H 0.094 0.906
39 H 0.103 0.897
40 H 0.110 0.890
41 H 0.072 0.928
42 H 0.064 0.936
43 H 0.095 0.905
44 H 0.091 0.909
45 H 0.094 0.906
46 H 0.096 0.904
47 H 0.107 0.893
48 H 0.057 0.943
49 H 0.073 0.927
50 H 0.051 0.949
51 H 0.002 0.998
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.554 -25.729 -17.272 32.148
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.246 4.246
3 Si 0.795 3.205
4 H -0.208 1.208
5 H -0.225 1.225
6 H -0.196 1.196
7 C -0.390 4.390
8 H 0.082 0.918
9 N -0.330 5.330
10 C 0.050 3.950
11 C -0.146 4.146
12 C -0.076 4.076
13 C -0.013 4.013
14 N -0.369 5.369
15 C 0.403 3.597
16 O -0.494 6.494
17 C -0.266 4.266
18 C -0.205 4.205
19 C -0.089 4.089
20 N -0.113 5.113
21 C -0.066 4.066
22 C -0.028 4.028
23 C -0.167 4.167
24 C -0.162 4.162
25 C -0.090 4.090
26 C -0.002 4.002
27 C -0.129 4.129
28 C 0.019 3.981
29 H 0.059 0.941
30 H 0.076 0.924
31 H 0.012 0.988
32 H 0.087 0.913
33 H 0.098 0.902
34 H 0.109 0.891
35 H 0.068 0.932
36 H 0.174 0.826
37 H 0.194 0.806
38 H 0.112 0.888
39 H 0.121 0.879
40 H 0.129 0.871
41 H 0.090 0.910
42 H 0.082 0.918
43 H 0.114 0.886
44 H 0.109 0.891
45 H 0.112 0.888
46 H 0.114 0.886
47 H 0.125 0.875
48 H 0.075 0.925
49 H 0.091 0.909
50 H 0.070 0.930
51 H 0.020 0.980
Dipole moment (debyes) X Y Z Total
from point charges 8.233 -26.441 -16.833 32.408
hybrid contribution -0.419 1.266 0.996 1.664
sum 7.814 -25.175 -15.838 30.752
Atomic orbital electron populations
1.70199 1.06643 1.25788 1.55399 1.25791 0.96006 1.01447 1.01361
0.85277 0.77980 0.79571 0.77672 1.20835 1.22487 1.19562 1.19505
0.92975 0.86082 1.40482 0.91766 1.44292 1.37267 1.01919 1.49545
1.20636 0.87592 0.98112 0.88668 1.21834 1.01498 0.93284 0.98025
1.21526 0.95245 0.94218 0.96611 1.23052 0.97754 0.81890 0.98584
1.49395 1.48815 1.03606 1.35096 1.17406 0.79825 0.79791 0.82708
1.90706 1.47281 1.75782 1.35657 1.20169 1.09717 0.93239 1.03508
1.22023 1.01879 0.98773 0.97791 1.20839 1.03186 0.85994 0.98919
1.44215 1.35248 1.08309 1.23520 1.21727 0.96457 0.94043 0.94338
1.22465 1.02537 0.77883 0.99933 1.21870 0.99098 1.01847 0.93865
1.21636 0.97627 0.93074 1.03825 1.20492 0.96088 0.99285 0.93151
1.23249 0.99524 0.84179 0.93201 1.21483 0.96674 0.98278 0.96438
1.20962 0.96716 0.86359 0.94067 0.94146 0.92376 0.98808 0.91319
0.90204 0.89109 0.93226 0.82616 0.80595 0.88759 0.87916 0.87140
0.90975 0.91759 0.88636 0.89078 0.88765 0.88613 0.87503 0.92465
0.90857 0.93027 0.97962
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.48 11.21 21.65 0.24 -55.24 16
2 C -0.05 -2.84 4.89 84.86 0.42 -2.42 16
3 Si 0.97 44.91 29.59 68.60 2.03 46.94 16
4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16
6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16
7 C -0.26 -14.35 9.56 84.03 0.80 -13.55 16
8 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16
9 N -0.61 -30.60 2.96 -698.65 -2.07 -32.67 16
10 C 0.18 8.28 5.27 86.43 0.46 8.73 16
11 C -0.11 -3.67 5.31 30.57 0.16 -3.51 16
12 C -0.08 -2.37 0.83 -52.61 -0.04 -2.41 16
13 C 0.11 3.75 7.57 83.33 0.63 4.38 16
14 N -0.64 -20.42 3.46 -862.67 -2.99 -23.41 16
15 C 0.61 21.63 8.06 86.61 0.70 22.33 16
16 O -0.61 -26.41 17.69 -4.11 -0.07 -26.48 16
17 C -0.26 -7.28 6.29 -19.02 -0.12 -7.40 16
18 C -0.18 -4.05 10.03 23.54 0.24 -3.82 16
19 C 0.02 0.34 6.53 40.91 0.27 0.60 16
20 N -0.44 -7.47 3.11 -507.85 -1.58 -9.05 16
21 C 0.07 1.68 11.18 83.93 0.94 2.62 16
22 C 0.09 0.76 6.89 86.32 0.59 1.36 16
23 C -0.13 -0.61 5.91 30.68 0.18 -0.43 16
24 C -0.12 -0.73 5.96 30.73 0.18 -0.54 16
25 C -0.05 -0.52 6.26 30.07 0.19 -0.33 16
26 C 0.12 3.01 6.29 83.22 0.52 3.53 16
27 C -0.09 -3.11 5.25 30.56 0.16 -2.95 16
28 C 0.14 6.29 6.41 86.43 0.55 6.84 16
29 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16
30 H 0.06 3.11 5.97 -2.39 -0.01 3.09 16
31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16
32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16
33 H 0.08 2.33 8.09 -2.39 -0.02 2.31 16
34 H 0.09 2.88 8.06 -2.39 -0.02 2.86 16
35 H 0.05 1.95 7.53 -2.39 -0.02 1.93 16
36 H 0.16 3.02 5.51 -2.91 -0.02 3.01 16
37 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16
38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16
39 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16
40 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16
41 H 0.07 0.42 8.11 -2.39 -0.02 0.40 16
42 H 0.06 0.46 8.12 -2.39 -0.02 0.44 16
43 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16
44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16
45 H 0.09 0.82 8.14 -2.38 -0.02 0.81 16
46 H 0.10 2.08 6.16 -2.39 -0.01 2.07 16
47 H 0.11 2.20 8.09 -2.38 -0.02 2.18 16
48 H 0.06 1.94 7.95 -2.38 -0.02 1.92 16
49 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16
50 H 0.05 2.22 7.92 -2.39 -0.02 2.20 16
51 H 0.00 0.11 7.60 -2.39 -0.02 0.09 16
Total: -1.00 -76.28 394.46 3.31 -72.97
By element:
Atomic # 1 Polarization: 12.99 SS G_CDS: 0.91 Total: 13.90 kcal
Atomic # 6 Polarization: 6.21 SS G_CDS: 6.83 Total: 13.04 kcal
Atomic # 7 Polarization: -113.98 SS G_CDS: -6.39 Total: -120.37 kcal
Atomic # 8 Polarization: -26.41 SS G_CDS: -0.07 Total: -26.48 kcal
Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal
Total: -76.28 3.31 -72.97 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001050780346.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.589 kcal
(2) G-P(sol) polarization free energy of solvation -76.282 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.308 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.972 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.617 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds