Wall clock time and date at job start Sat Apr 11 2020 07:01:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.36668 * 120.11926 * 2 1
4 4 C 1.38792 * 120.53079 * 180.02562 * 3 2 1
5 5 C 1.37786 * 120.66626 * 359.97386 * 4 3 2
6 6 C 1.39084 * 119.77718 * 0.02562 * 5 4 3
7 7 N 1.37694 * 133.50810 * 179.97438 * 6 5 4
8 8 H 0.96992 * 125.06585 * 0.03787 * 7 6 5
9 9 C 1.36835 * 109.87178 * 180.02562 * 7 6 5
10 10 C 1.34240 * 109.93901 * 359.97438 * 9 7 6
11 11 C 1.50698 * 126.49785 * 179.97438 * 10 9 7
12 12 C 1.50703 * 109.46874 * 94.17716 * 11 10 9
13 13 O 1.21277 * 119.99945 * 359.97438 * 12 11 10
14 14 N 1.34779 * 119.99930 * 180.02562 * 12 11 10
15 15 C 1.46503 * 119.99711 * 179.72443 * 14 12 11
16 16 H 1.08996 * 109.47564 * 35.27189 * 15 14 12
17 17 C 1.52999 * 109.46737 * 275.26998 * 15 14 12
18 18 C 1.53000 * 109.47052 * 155.27512 * 15 14 12
19 19 C 1.52998 * 109.46939 * 294.99750 * 18 15 14
20 20 H 1.08997 * 109.47357 * 54.99832 * 19 18 15
21 21 C 1.53003 * 109.47333 * 175.00377 * 19 18 15
22 22 N 1.46509 * 109.47093 * 295.00114 * 19 18 15
23 23 C 1.36936 * 120.00068 * 154.99945 * 22 19 18
24 24 H 1.07996 * 119.99886 * 359.97438 * 23 22 19
25 25 C 1.38812 * 119.99787 * 180.02562 * 23 22 19
26 26 N 1.31617 * 120.00270 * 359.97438 * 25 23 22
27 27 Si 1.86803 * 119.99904 * 180.02562 * 25 23 22
28 28 H 1.48504 * 109.47059 * 90.00110 * 27 25 23
29 29 H 1.48496 * 109.46916 * 210.00167 * 27 25 23
30 30 H 1.48503 * 109.47018 * 329.99940 * 27 25 23
31 31 C 1.39592 * 120.11997 * 180.25415 * 2 1 3
32 32 H 1.09004 * 109.47098 * 95.58668 * 1 2 3
33 33 H 1.09007 * 109.47073 * 215.58351 * 1 2 3
34 34 H 1.08995 * 109.47624 * 335.58335 * 1 2 3
35 35 H 1.08002 * 119.73115 * 359.97438 * 3 2 1
36 36 H 1.08002 * 119.66354 * 180.02562 * 4 3 2
37 37 H 1.07998 * 120.10945 * 180.02562 * 5 4 3
38 38 H 1.08001 * 125.03099 * 179.97438 * 9 7 6
39 39 H 1.08998 * 109.47736 * 334.17477 * 11 10 9
40 40 H 1.09006 * 109.46920 * 214.17082 * 11 10 9
41 41 H 0.96993 * 120.00028 * 359.97438 * 14 12 11
42 42 H 1.09002 * 109.47679 * 300.00507 * 17 15 14
43 43 H 1.09004 * 109.47284 * 60.00304 * 17 15 14
44 44 H 1.09005 * 109.47223 * 180.02562 * 17 15 14
45 45 H 1.08998 * 109.47462 * 54.99460 * 18 15 14
46 46 H 1.08995 * 109.47001 * 174.99634 * 18 15 14
47 47 H 1.09003 * 109.47160 * 179.97438 * 21 19 18
48 48 H 1.08999 * 109.46579 * 299.99806 * 21 19 18
49 49 H 1.08997 * 109.47344 * 59.99447 * 21 19 18
50 50 H 0.97002 * 119.99829 * 334.99825 * 22 19 18
51 51 H 0.96994 * 120.00537 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1927 1.1822 0.0000
4 6 3.5806 1.1921 -0.0005
5 6 4.2919 0.0120 -0.0005
6 6 3.6145 -1.2027 -0.0005
7 7 4.0250 -2.5170 -0.0010
8 1 4.9489 -2.8122 -0.0009
9 6 2.9354 -3.3447 -0.0013
10 6 1.8075 -2.6167 -0.0005
11 6 0.3975 -3.1484 -0.0011
12 6 -0.1090 -3.2303 1.4159
13 8 0.6049 -2.8908 2.3356
14 7 -1.3551 -3.6818 1.6611
15 6 -1.8453 -3.7671 3.0390
16 1 -1.4420 -2.9378 3.6202
17 6 -1.3950 -5.0912 3.6594
18 6 -3.3736 -3.6961 3.0419
19 6 -3.8214 -2.3229 2.5374
20 1 -3.3793 -2.1333 1.5592
21 6 -5.3468 -2.2944 2.4219
22 7 -3.3836 -1.2899 3.4795
23 6 -3.1957 -0.0042 3.0473
24 1 -3.3698 0.2482 2.0118
25 6 -2.7804 0.9744 3.9399
26 7 -2.5677 0.6667 5.2018
27 14 -2.5247 2.7285 3.3504
28 1 -3.7928 3.4882 3.4924
29 1 -1.4660 3.3754 4.1663
30 1 -2.1122 2.7161 1.9239
31 6 2.2074 -1.2074 -0.0054
32 1 -0.3633 -0.1000 -1.0228
33 1 -0.3633 -0.8358 0.5980
34 1 -0.3634 0.9357 0.4248
35 1 1.6503 2.1161 -0.0004
36 1 4.1084 2.1344 -0.0001
37 1 5.3717 0.0303 -0.0005
38 1 2.9766 -4.4239 -0.0021
39 1 0.3837 -4.1416 -0.4498
40 1 -0.2425 -2.4803 -0.5776
41 1 -1.9259 -3.9536 0.9255
42 1 -1.7983 -5.9205 3.0782
43 1 -0.3062 -5.1418 3.6573
44 1 -1.7601 -5.1550 4.6845
45 1 -3.7746 -4.4715 2.3892
46 1 -3.7425 -3.8485 4.0562
47 1 -5.6657 -1.3159 2.0629
48 1 -5.6724 -3.0629 1.7209
49 1 -5.7888 -2.4840 3.4000
50 1 -3.2269 -1.5167 4.4096
51 1 -2.2779 1.3505 5.8256
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001135941710.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:19
Heat of formation + Delta-G solvation = 16.123028 kcal
Electronic energy + Delta-G solvation = -31124.400020 eV
Core-core repulsion = 27216.708439 eV
Total energy + Delta-G solvation = -3907.691581 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.22233 -39.28456 -37.01640 -36.71059 -34.34067 -33.48733 -32.08371 -31.33855
-30.35558 -29.11990 -28.52984 -27.66914 -26.25602 -25.72848 -23.54186 -21.96347
-21.73655 -21.54877 -20.27019 -19.61381 -18.92852 -17.33950 -17.18828 -16.58832
-16.28023 -15.66981 -15.22948 -14.92969 -14.62509 -14.39941 -14.08943 -13.89048
-13.63017 -13.36946 -13.18459 -13.04638 -12.87084 -12.71507 -12.63499 -12.43657
-12.11711 -11.98132 -11.79281 -11.72570 -11.66358 -11.51025 -11.12751 -11.03360
-10.90602 -10.77296 -10.55112 -10.51866 -10.34098 -10.15683 -9.82173 -9.54770
-9.46740 -9.11193 -8.80183 -8.54023 -8.03577 -7.40085 -6.84099 -5.65370
-2.92795 1.29941 1.83918 2.71889 3.16647 3.20569 3.50061 3.54363
3.57537 3.72918 4.11049 4.68838 4.82459 4.89026 5.02201 5.15764
5.20425 5.26807 5.33536 5.42192 5.51998 5.56842 5.57415 5.65681
5.70008 5.75955 5.78310 5.85532 5.97041 5.99407 6.01966 6.02784
6.08139 6.15820 6.20688 6.27327 6.35718 6.42910 6.51332 6.58102
6.64120 6.66864 6.80822 6.84229 6.85717 6.91424 7.03110 7.05207
7.13881 7.35717 7.61622 7.79175 7.98932 8.52873 8.77785 9.64307
10.22119 10.56105 11.57596
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.008786 B = 0.004633 C = 0.003359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3186.055529 B = 6041.752178 C = 8333.396308
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.021 4.021
3 C -0.154 4.154
4 C -0.094 4.094
5 C -0.145 4.145
6 C 0.099 3.901
7 N -0.597 5.597
8 H 0.412 0.588
9 C 0.053 3.947
10 C -0.141 4.141
11 C -0.070 4.070
12 C 0.511 3.489
13 O -0.521 6.521
14 N -0.722 5.722
15 C 0.145 3.855
16 H 0.104 0.896
17 C -0.160 4.160
18 C -0.130 4.130
19 C 0.173 3.827
20 H 0.046 0.954
21 C -0.165 4.165
22 N -0.720 5.720
23 C -0.231 4.231
24 H 0.067 0.933
25 C -0.010 4.010
26 N -0.931 5.931
27 Si 0.898 3.102
28 H -0.292 1.292
29 H -0.292 1.292
30 H -0.281 1.281
31 C -0.089 4.089
32 H 0.066 0.934
33 H 0.075 0.925
34 H 0.070 0.930
35 H 0.120 0.880
36 H 0.121 0.879
37 H 0.115 0.885
38 H 0.165 0.835
39 H 0.093 0.907
40 H 0.100 0.900
41 H 0.392 0.608
42 H 0.048 0.952
43 H 0.054 0.946
44 H 0.061 0.939
45 H 0.059 0.941
46 H 0.073 0.927
47 H 0.051 0.949
48 H 0.033 0.967
49 H 0.045 0.955
50 H 0.382 0.618
51 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.853 -11.390 -13.912 20.041
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C -0.022 4.022
3 C -0.173 4.173
4 C -0.113 4.113
5 C -0.166 4.166
6 C -0.008 4.008
7 N -0.199 5.199
8 H 0.249 0.751
9 C -0.073 4.073
10 C -0.148 4.148
11 C -0.111 4.111
12 C 0.297 3.703
13 O -0.396 6.396
14 N -0.373 5.373
15 C 0.040 3.960
16 H 0.122 0.878
17 C -0.218 4.218
18 C -0.169 4.169
19 C 0.062 3.938
20 H 0.064 0.936
21 C -0.226 4.226
22 N -0.361 5.361
23 C -0.362 4.362
24 H 0.085 0.915
25 C -0.206 4.206
26 N -0.580 5.580
27 Si 0.729 3.271
28 H -0.220 1.220
29 H -0.219 1.219
30 H -0.207 1.207
31 C -0.094 4.094
32 H 0.084 0.916
33 H 0.094 0.906
34 H 0.089 0.911
35 H 0.138 0.862
36 H 0.139 0.861
37 H 0.133 0.867
38 H 0.183 0.817
39 H 0.111 0.889
40 H 0.118 0.882
41 H 0.225 0.775
42 H 0.067 0.933
43 H 0.073 0.927
44 H 0.080 0.920
45 H 0.078 0.922
46 H 0.091 0.909
47 H 0.070 0.930
48 H 0.052 0.948
49 H 0.064 0.936
50 H 0.216 0.784
51 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 9.524 -11.044 -13.311 19.745
hybrid contribution 0.318 0.702 -0.147 0.784
sum 9.843 -10.343 -13.458 19.620
Atomic orbital electron populations
1.20892 0.90799 1.04362 1.01501 1.19167 0.95998 0.91097 0.95930
1.20563 0.94041 0.97481 1.05186 1.20733 0.94031 0.96803 0.99712
1.19889 0.98701 0.89637 1.08359 1.18181 0.93664 0.84926 1.04036
1.41584 1.08182 1.04102 1.66075 0.75132 1.21410 0.85420 0.95636
1.04814 1.19492 0.93102 0.91147 1.11078 1.20067 0.93502 1.02386
0.95107 1.20485 0.81762 0.77009 0.91079 1.90741 1.56133 1.46608
1.46106 1.45996 1.15169 1.67145 1.09029 1.20969 0.93954 0.98384
0.82650 0.87818 1.22176 1.01572 0.97386 1.00685 1.22157 0.93996
0.98553 1.02195 1.20208 0.91835 0.87558 0.94149 0.93589 1.22465
0.99762 1.00291 1.00052 1.42395 1.80375 1.05120 1.08241 1.19115
1.37532 0.85462 0.94077 0.91544 1.24656 1.02517 0.97798 0.95646
1.69635 1.53163 1.32704 1.02468 0.86327 0.77291 0.85690 0.77768
1.22007 1.21878 1.20661 1.18809 0.91647 0.92623 1.06290 0.91581
0.90621 0.91078 0.86151 0.86068 0.86741 0.81749 0.88863 0.88181
0.77498 0.93292 0.92673 0.91980 0.92189 0.90861 0.92956 0.94787
0.93623 0.78399 0.93680
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.02 8.95 36.00 0.32 -1.69 16
2 C -0.02 -0.36 5.87 -104.69 -0.61 -0.98 16
3 C -0.15 -2.41 9.60 -39.94 -0.38 -2.79 16
4 C -0.09 -1.29 10.01 -39.54 -0.40 -1.68 16
5 C -0.15 -1.94 10.08 -39.43 -0.40 -2.34 16
6 C 0.10 1.44 7.28 -83.98 -0.61 0.83 16
7 N -0.60 -6.94 6.07 -10.65 -0.06 -7.00 16
8 H 0.41 3.30 8.96 -40.82 -0.37 2.93 16
9 C 0.05 0.63 11.73 -16.73 -0.20 0.44 16
10 C -0.14 -2.03 4.81 -102.71 -0.49 -2.52 16
11 C -0.07 -0.88 5.34 -29.03 -0.15 -1.03 16
12 C 0.51 8.32 6.69 -10.98 -0.07 8.25 16
13 O -0.52 -11.22 15.70 5.56 0.09 -11.13 16
14 N -0.72 -10.30 4.45 -53.80 -0.24 -10.54 16
15 C 0.14 2.35 2.52 -67.93 -0.17 2.18 16
16 H 0.10 2.26 7.06 -51.93 -0.37 1.89 16
17 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16
18 C -0.13 -1.98 4.29 -26.73 -0.11 -2.10 16
19 C 0.17 3.23 2.84 -67.93 -0.19 3.03 16
20 H 0.05 0.87 7.56 -51.93 -0.39 0.48 16
21 C -0.17 -2.87 9.49 37.16 0.35 -2.52 16
22 N -0.72 -17.57 4.49 -53.42 -0.24 -17.81 16
23 C -0.23 -6.34 9.93 -15.06 -0.15 -6.49 16
24 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16
25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16
26 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16
27 Si 0.90 22.98 29.55 -169.99 -5.02 17.96 16
28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
29 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16
30 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16
31 C -0.09 -1.47 6.15 -105.14 -0.65 -2.12 16
32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16
33 H 0.07 1.41 5.46 -51.93 -0.28 1.13 16
34 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16
35 H 0.12 1.74 8.05 -52.49 -0.42 1.32 16
36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16
37 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16
38 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16
39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
40 H 0.10 1.18 6.62 -51.93 -0.34 0.84 16
41 H 0.39 4.31 8.60 -40.82 -0.35 3.96 16
42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
46 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
48 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
49 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16
50 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16
51 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16
LS Contribution 415.07 15.07 6.26 6.26
Total: -1.00 -35.91 415.07 -10.47 -46.38
By element:
Atomic # 1 Polarization: 25.98 SS G_CDS: -8.30 Total: 17.67 kcal
Atomic # 6 Polarization: -10.13 SS G_CDS: -3.66 Total: -13.80 kcal
Atomic # 7 Polarization: -63.52 SS G_CDS: 0.18 Total: -63.34 kcal
Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal
Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal
Total LS contribution 6.26 Total: 6.26 kcal
Total: -35.91 -10.47 -46.38 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135941710.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.504 kcal
(2) G-P(sol) polarization free energy of solvation -35.912 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.592 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.381 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.123 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds