Wall clock time and date at job start Sat Apr 11 2020 07:01:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.36668 * 120.11926 * 2 1
4 4 C 1.38792 * 120.53079 * 180.02562 * 3 2 1
5 5 C 1.37786 * 120.66626 * 359.97386 * 4 3 2
6 6 C 1.39084 * 119.77718 * 0.02562 * 5 4 3
7 7 N 1.37694 * 133.50810 * 179.97438 * 6 5 4
8 8 H 0.96992 * 125.06585 * 0.03787 * 7 6 5
9 9 C 1.36835 * 109.87178 * 180.02562 * 7 6 5
10 10 C 1.34240 * 109.93901 * 359.97438 * 9 7 6
11 11 C 1.50698 * 126.49785 * 179.97438 * 10 9 7
12 12 C 1.50703 * 109.46874 * 94.17716 * 11 10 9
13 13 O 1.21277 * 119.99945 * 359.97438 * 12 11 10
14 14 N 1.34779 * 119.99930 * 180.02562 * 12 11 10
15 15 C 1.46503 * 119.99711 * 179.72443 * 14 12 11
16 16 H 1.08996 * 109.47564 * 35.27189 * 15 14 12
17 17 C 1.52999 * 109.46737 * 275.26998 * 15 14 12
18 18 C 1.53000 * 109.47052 * 155.27512 * 15 14 12
19 19 C 1.52998 * 109.46939 * 294.99750 * 18 15 14
20 20 H 1.08997 * 109.47357 * 54.99832 * 19 18 15
21 21 C 1.53003 * 109.47333 * 175.00377 * 19 18 15
22 22 N 1.46509 * 109.47093 * 295.00114 * 19 18 15
23 23 C 1.36936 * 120.00068 * 154.99945 * 22 19 18
24 24 H 1.07996 * 119.99886 * 359.97438 * 23 22 19
25 25 C 1.38812 * 119.99787 * 180.02562 * 23 22 19
26 26 N 1.31617 * 120.00270 * 359.97438 * 25 23 22
27 27 Si 1.86803 * 119.99904 * 180.02562 * 25 23 22
28 28 H 1.48504 * 109.47059 * 90.00110 * 27 25 23
29 29 H 1.48496 * 109.46916 * 210.00167 * 27 25 23
30 30 H 1.48503 * 109.47018 * 329.99940 * 27 25 23
31 31 C 1.39592 * 120.11997 * 180.25415 * 2 1 3
32 32 H 1.09004 * 109.47098 * 95.58668 * 1 2 3
33 33 H 1.09007 * 109.47073 * 215.58351 * 1 2 3
34 34 H 1.08995 * 109.47624 * 335.58335 * 1 2 3
35 35 H 1.08002 * 119.73115 * 359.97438 * 3 2 1
36 36 H 1.08002 * 119.66354 * 180.02562 * 4 3 2
37 37 H 1.07998 * 120.10945 * 180.02562 * 5 4 3
38 38 H 1.08001 * 125.03099 * 179.97438 * 9 7 6
39 39 H 1.08998 * 109.47736 * 334.17477 * 11 10 9
40 40 H 1.09006 * 109.46920 * 214.17082 * 11 10 9
41 41 H 0.96993 * 120.00028 * 359.97438 * 14 12 11
42 42 H 1.09002 * 109.47679 * 300.00507 * 17 15 14
43 43 H 1.09004 * 109.47284 * 60.00304 * 17 15 14
44 44 H 1.09005 * 109.47223 * 180.02562 * 17 15 14
45 45 H 1.08998 * 109.47462 * 54.99460 * 18 15 14
46 46 H 1.08995 * 109.47001 * 174.99634 * 18 15 14
47 47 H 1.09003 * 109.47160 * 179.97438 * 21 19 18
48 48 H 1.08999 * 109.46579 * 299.99806 * 21 19 18
49 49 H 1.08997 * 109.47344 * 59.99447 * 21 19 18
50 50 H 0.97002 * 119.99829 * 334.99825 * 22 19 18
51 51 H 0.96994 * 120.00537 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1927 1.1822 0.0000
4 6 3.5806 1.1921 -0.0005
5 6 4.2919 0.0120 -0.0005
6 6 3.6145 -1.2027 -0.0005
7 7 4.0250 -2.5170 -0.0010
8 1 4.9489 -2.8122 -0.0009
9 6 2.9354 -3.3447 -0.0013
10 6 1.8075 -2.6167 -0.0005
11 6 0.3975 -3.1484 -0.0011
12 6 -0.1090 -3.2303 1.4159
13 8 0.6049 -2.8908 2.3356
14 7 -1.3551 -3.6818 1.6611
15 6 -1.8453 -3.7671 3.0390
16 1 -1.4420 -2.9378 3.6202
17 6 -1.3950 -5.0912 3.6594
18 6 -3.3736 -3.6961 3.0419
19 6 -3.8214 -2.3229 2.5374
20 1 -3.3793 -2.1333 1.5592
21 6 -5.3468 -2.2944 2.4219
22 7 -3.3836 -1.2899 3.4795
23 6 -3.1957 -0.0042 3.0473
24 1 -3.3698 0.2482 2.0118
25 6 -2.7804 0.9744 3.9399
26 7 -2.5677 0.6667 5.2018
27 14 -2.5247 2.7285 3.3504
28 1 -3.7928 3.4882 3.4924
29 1 -1.4660 3.3754 4.1663
30 1 -2.1122 2.7161 1.9239
31 6 2.2074 -1.2074 -0.0054
32 1 -0.3633 -0.1000 -1.0228
33 1 -0.3633 -0.8358 0.5980
34 1 -0.3634 0.9357 0.4248
35 1 1.6503 2.1161 -0.0004
36 1 4.1084 2.1344 -0.0001
37 1 5.3717 0.0303 -0.0005
38 1 2.9766 -4.4239 -0.0021
39 1 0.3837 -4.1416 -0.4498
40 1 -0.2425 -2.4803 -0.5776
41 1 -1.9259 -3.9536 0.9255
42 1 -1.7983 -5.9205 3.0782
43 1 -0.3062 -5.1418 3.6573
44 1 -1.7601 -5.1550 4.6845
45 1 -3.7746 -4.4715 2.3892
46 1 -3.7425 -3.8485 4.0562
47 1 -5.6657 -1.3159 2.0629
48 1 -5.6724 -3.0629 1.7209
49 1 -5.7888 -2.4840 3.4000
50 1 -3.2269 -1.5167 4.4096
51 1 -2.2779 1.3505 5.8256
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001135941710.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:18
Heat of formation + Delta-G solvation = -7.567010 kcal
Electronic energy + Delta-G solvation = -31125.427298 eV
Core-core repulsion = 27216.708439 eV
Total energy + Delta-G solvation = -3908.718859 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.23964 -40.56835 -38.26673 -38.02124 -35.95754 -34.60312 -33.94251 -32.57376
-31.59679 -30.38727 -30.16713 -28.77688 -27.55008 -26.85883 -25.62057 -23.04245
-22.83068 -22.77572 -21.63482 -21.08187 -19.99801 -19.22893 -18.33579 -17.86616
-17.33894 -17.02060 -16.55209 -16.25259 -16.07208 -15.64699 -15.52041 -15.40261
-15.16317 -14.59166 -14.49602 -14.26451 -14.24205 -14.08064 -13.74406 -13.59775
-13.54584 -13.30102 -13.16570 -13.02845 -12.88470 -12.84108 -12.75602 -12.64290
-12.22263 -12.19432 -12.17007 -12.12949 -11.77063 -11.60668 -11.51242 -11.36676
-10.88211 -10.74783 -10.25641 -9.82408 -9.10767 -8.90837 -8.43637 -7.89194
-5.13215 0.22569 0.71483 1.41146 1.44033 1.50457 1.70074 1.93888
2.30738 2.57183 2.59924 2.97996 3.46486 3.79415 3.87701 3.94983
4.02862 4.05994 4.09342 4.18534 4.28166 4.36158 4.41273 4.47089
4.56448 4.59188 4.60846 4.69581 4.72660 4.75485 4.83813 4.85720
4.87873 4.92090 5.00000 5.02654 5.09008 5.14061 5.16617 5.29240
5.31979 5.40792 5.49215 5.57020 5.57956 5.67544 5.75862 5.77928
5.81104 5.90404 6.28449 6.34030 6.79251 6.85925 7.40150 7.60179
8.21101 8.40100 9.35079
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.008786 B = 0.004633 C = 0.003359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3186.055529 B = 6041.752178 C = 8333.396308
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.108 4.108
2 C -0.057 4.057
3 C -0.171 4.171
4 C -0.105 4.105
5 C -0.140 4.140
6 C 0.079 3.921
7 N -0.584 5.584
8 H 0.431 0.569
9 C 0.071 3.929
10 C -0.179 4.179
11 C -0.059 4.059
12 C 0.507 3.493
13 O -0.583 6.583
14 N -0.709 5.709
15 C 0.148 3.852
16 H 0.039 0.961
17 C -0.149 4.149
18 C -0.117 4.117
19 C 0.164 3.836
20 H 0.046 0.954
21 C -0.156 4.156
22 N -0.731 5.731
23 C -0.214 4.214
24 H 0.071 0.929
25 C -0.077 4.077
26 N -0.971 5.971
27 Si 0.950 3.050
28 H -0.286 1.286
29 H -0.305 1.305
30 H -0.267 1.267
31 C -0.118 4.118
32 H 0.089 0.911
33 H 0.053 0.947
34 H 0.046 0.954
35 H 0.120 0.880
36 H 0.148 0.852
37 H 0.147 0.853
38 H 0.206 0.794
39 H 0.139 0.861
40 H 0.104 0.896
41 H 0.412 0.588
42 H 0.084 0.916
43 H 0.036 0.964
44 H 0.062 0.938
45 H 0.107 0.893
46 H 0.070 0.930
47 H 0.029 0.971
48 H 0.077 0.923
49 H 0.039 0.961
50 H 0.368 0.632
51 H 0.245 0.755
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.162 -14.128 -16.565 23.621
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.058 4.058
3 C -0.190 4.190
4 C -0.124 4.124
5 C -0.161 4.161
6 C -0.029 4.029
7 N -0.188 5.188
8 H 0.270 0.730
9 C -0.055 4.055
10 C -0.186 4.186
11 C -0.099 4.099
12 C 0.295 3.705
13 O -0.462 6.462
14 N -0.361 5.361
15 C 0.043 3.957
16 H 0.057 0.943
17 C -0.207 4.207
18 C -0.156 4.156
19 C 0.057 3.943
20 H 0.064 0.936
21 C -0.216 4.216
22 N -0.371 5.371
23 C -0.346 4.346
24 H 0.089 0.911
25 C -0.269 4.269
26 N -0.623 5.623
27 Si 0.781 3.219
28 H -0.213 1.213
29 H -0.232 1.232
30 H -0.192 1.192
31 C -0.123 4.123
32 H 0.107 0.893
33 H 0.072 0.928
34 H 0.065 0.935
35 H 0.138 0.862
36 H 0.166 0.834
37 H 0.164 0.836
38 H 0.223 0.777
39 H 0.157 0.843
40 H 0.122 0.878
41 H 0.249 0.751
42 H 0.103 0.897
43 H 0.055 0.945
44 H 0.081 0.919
45 H 0.126 0.874
46 H 0.089 0.911
47 H 0.048 0.952
48 H 0.096 0.904
49 H 0.058 0.942
50 H 0.200 0.800
51 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges 9.793 -13.831 -16.054 23.343
hybrid contribution 0.242 1.447 0.620 1.593
sum 10.035 -12.384 -15.434 22.187
Atomic orbital electron populations
1.20760 0.91612 1.01902 1.02232 1.19321 0.95862 0.92301 0.98297
1.20777 0.95366 0.97224 1.05644 1.21053 0.93323 0.98392 0.99597
1.20292 1.00316 0.89027 1.06455 1.18456 0.93399 0.86479 1.04543
1.41627 1.09311 1.03033 1.64819 0.72971 1.22059 0.84589 0.97283
1.01614 1.19810 0.94751 0.90627 1.13431 1.20077 0.92622 1.04889
0.92360 1.21233 0.81592 0.75562 0.92130 1.90713 1.57895 1.49321
1.48290 1.45873 1.14991 1.66346 1.08939 1.20721 0.94475 0.97402
0.83101 0.94266 1.22058 1.00445 0.96966 1.01238 1.22064 0.93031
0.97441 1.03023 1.20522 0.92909 0.87980 0.92931 0.93606 1.22312
0.97884 1.00552 1.00848 1.42621 1.80478 1.05445 1.08546 1.19458
1.34502 0.86769 0.93914 0.91098 1.25339 1.04204 1.01334 0.95981
1.69790 1.55726 1.33212 1.03539 0.85458 0.76864 0.81894 0.77727
1.21340 1.23233 1.19227 1.19207 0.92939 0.93492 1.06670 0.89256
0.92827 0.93499 0.86156 0.83404 0.83573 0.77685 0.84308 0.87812
0.75145 0.89739 0.94510 0.91864 0.87423 0.91138 0.95198 0.90410
0.94174 0.80048 0.94662
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -3.86 8.95 71.23 0.64 -3.23 16
2 C -0.06 -2.03 5.87 -19.91 -0.12 -2.15 16
3 C -0.17 -5.57 9.60 22.03 0.21 -5.35 16
4 C -0.10 -2.84 10.01 22.30 0.22 -2.61 16
5 C -0.14 -3.58 10.08 22.37 0.23 -3.35 16
6 C 0.08 2.23 7.28 39.03 0.28 2.51 16
7 N -0.58 -12.23 6.07 -187.60 -1.14 -13.37 16
8 H 0.43 5.62 8.96 -92.71 -0.83 4.79 16
9 C 0.07 1.51 11.73 83.00 0.97 2.49 16
10 C -0.18 -4.95 4.81 -18.63 -0.09 -5.04 16
11 C -0.06 -1.39 5.34 29.10 0.16 -1.23 16
12 C 0.51 16.39 6.69 87.66 0.59 16.97 16
13 O -0.58 -26.10 15.70 -3.02 -0.05 -26.15 16
14 N -0.71 -19.29 4.45 -442.53 -1.97 -21.26 16
15 C 0.15 4.75 2.52 44.99 0.11 4.87 16
16 H 0.04 1.80 7.06 -2.39 -0.02 1.79 16
17 C -0.15 -3.94 9.48 71.98 0.68 -3.26 16
18 C -0.12 -3.31 4.29 30.59 0.13 -3.18 16
19 C 0.16 5.98 2.84 44.99 0.13 6.10 16
20 H 0.05 1.67 7.56 -2.39 -0.02 1.66 16
21 C -0.16 -5.07 9.49 71.98 0.68 -4.39 16
22 N -0.73 -36.62 4.49 -322.93 -1.45 -38.07 16
23 C -0.21 -12.09 9.93 84.03 0.83 -11.26 16
24 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16
25 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16
26 N -0.97 -62.78 13.06 21.65 0.28 -62.50 16
27 Si 0.95 49.01 29.55 68.60 2.03 51.04 16
28 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16
29 H -0.30 -16.25 7.11 99.48 0.71 -15.54 16
30 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16
31 C -0.12 -3.93 6.15 -20.20 -0.12 -4.05 16
32 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16
33 H 0.05 2.10 5.46 -2.38 -0.01 2.09 16
34 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16
35 H 0.12 3.70 8.05 -2.91 -0.02 3.67 16
36 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16
37 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16
38 H 0.21 2.49 8.06 -2.91 -0.02 2.47 16
39 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16
40 H 0.10 2.33 6.62 -2.38 -0.02 2.31 16
41 H 0.41 7.77 8.60 -92.71 -0.80 6.98 16
42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16
43 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16
44 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16
45 H 0.11 2.08 8.14 -2.39 -0.02 2.07 16
46 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
47 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16
48 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
49 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16
50 H 0.37 20.38 7.80 -92.71 -0.72 19.66 16
51 H 0.24 15.58 8.31 -92.71 -0.77 14.81 16
Total: -1.00 -85.77 415.07 2.31 -83.45
By element:
Atomic # 1 Polarization: 48.57 SS G_CDS: -1.40 Total: 47.18 kcal
Atomic # 6 Polarization: -26.34 SS G_CDS: 6.01 Total: -20.33 kcal
Atomic # 7 Polarization: -130.92 SS G_CDS: -4.28 Total: -135.19 kcal
Atomic # 8 Polarization: -26.10 SS G_CDS: -0.05 Total: -26.15 kcal
Atomic # 14 Polarization: 49.01 SS G_CDS: 2.03 Total: 51.04 kcal
Total: -85.77 2.31 -83.45 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135941710.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.885 kcal
(2) G-P(sol) polarization free energy of solvation -85.766 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.881 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.567 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds