Wall clock time and date at job start Sat Apr 11 2020 07:01:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50709 * 1
3 3 C 1.38345 * 119.45804 * 2 1
4 4 C 1.38361 * 119.29961 * 180.02562 * 3 2 1
5 5 C 1.40023 * 118.28961 * 0.27427 * 4 3 2
6 6 C 1.47837 * 120.56220 * 179.70108 * 5 4 3
7 7 O 1.21557 * 120.00313 * 134.76749 * 6 5 4
8 8 N 1.34780 * 120.00234 * 314.77443 * 6 5 4
9 9 C 1.46929 * 120.62714 * 3.78645 * 8 6 5
10 10 C 1.52761 * 109.00581 * 233.58683 * 9 8 6
11 11 C 1.53042 * 109.38401 * 305.59049 * 10 9 8
12 12 C 1.53040 * 109.53977 * 61.24059 * 11 10 9
13 13 H 1.08992 * 109.49556 * 58.58750 * 12 11 10
14 14 C 1.52995 * 109.49735 * 178.68596 * 12 11 10
15 15 H 1.09000 * 109.87284 * 180.29664 * 14 12 11
16 16 C 1.54327 * 109.88570 * 59.12063 * 14 12 11
17 17 C 1.55154 * 102.94289 * 218.39227 * 16 14 12
18 18 C 1.54912 * 101.58345 * 35.49538 * 17 16 14
19 19 N 1.47027 * 109.88258 * 301.31145 * 14 12 11
20 20 C 1.36939 * 125.64586 * 298.32123 * 19 14 12
21 21 H 1.07997 * 120.00131 * 346.37818 * 20 19 14
22 22 C 1.38813 * 119.99521 * 166.37370 * 20 19 14
23 23 N 1.31609 * 120.00341 * 0.02562 * 22 20 19
24 24 Si 1.86800 * 119.99580 * 180.02562 * 22 20 19
25 25 H 1.48504 * 109.47302 * 0.02562 * 24 22 20
26 26 H 1.48503 * 109.47155 * 120.00014 * 24 22 20
27 27 H 1.48497 * 109.47217 * 240.00327 * 24 22 20
28 28 C 1.46926 * 120.63036 * 184.06924 * 8 6 5
29 29 C 1.39529 * 118.87867 * 359.44275 * 5 4 3
30 30 N 1.31692 * 120.56377 * 0.57064 * 29 5 4
31 31 H 1.08998 * 109.47007 * 89.99692 * 1 2 3
32 32 H 1.09002 * 109.46919 * 209.99650 * 1 2 3
33 33 H 1.08999 * 109.46564 * 329.99894 * 1 2 3
34 34 H 1.08000 * 120.35753 * 0.03058 * 3 2 1
35 35 H 1.08000 * 120.85591 * 180.02562 * 4 3 2
36 36 H 1.09000 * 109.58526 * 353.41751 * 9 8 6
37 37 H 1.08993 * 109.58691 * 113.84777 * 9 8 6
38 38 H 1.09002 * 109.56140 * 185.55477 * 10 9 8
39 39 H 1.09002 * 109.36474 * 65.50280 * 10 9 8
40 40 H 1.09002 * 109.45732 * 301.21703 * 11 10 9
41 41 H 1.09003 * 109.45998 * 181.26471 * 11 10 9
42 42 H 1.09005 * 110.71623 * 336.75219 * 16 14 12
43 43 H 1.08991 * 110.71981 * 100.02433 * 16 14 12
44 44 H 1.09001 * 111.00145 * 277.42476 * 17 16 14
45 45 H 1.09000 * 111.00586 * 153.57448 * 17 16 14
46 46 H 1.09006 * 110.36806 * 204.15282 * 18 17 16
47 47 H 1.09009 * 110.45421 * 81.88000 * 18 17 16
48 48 H 0.97003 * 120.00073 * 179.97438 * 23 22 20
49 49 H 1.09004 * 109.58600 * 246.15006 * 28 8 6
50 50 H 1.08994 * 109.59012 * 6.57748 * 28 8 6
51 51 H 1.08000 * 119.71567 * 180.29036 * 29 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1875 1.2046 0.0000
4 6 3.5711 1.2008 -0.0005
5 6 4.2312 -0.0340 -0.0070
6 6 5.7083 -0.0967 -0.0145
7 8 6.2878 -0.8651 0.7281
8 7 6.4123 0.6982 -0.8446
9 6 5.7313 1.6900 -1.6878
10 6 6.1520 1.4802 -3.1413
11 6 7.6790 1.5147 -3.2381
12 6 8.2711 0.3838 -2.3940
13 1 7.8865 -0.5731 -2.7467
14 6 9.7960 0.3989 -2.5175
15 1 10.2239 -0.4079 -1.9225
16 6 10.3480 1.7582 -2.0387
17 6 11.5010 2.0368 -3.0388
18 6 10.9260 1.4439 -4.3494
19 7 10.1851 0.2416 -3.9266
20 6 9.9061 -0.8425 -4.7153
21 1 9.5563 -1.7607 -4.2671
22 6 10.0730 -0.7612 -6.0910
23 7 10.4997 0.3576 -6.6371
24 14 9.6918 -2.2398 -7.1669
25 1 9.2309 -3.3660 -6.3156
26 1 8.6249 -1.8844 -8.1368
27 1 10.9159 -2.6445 -7.9038
28 6 7.8749 0.5850 -0.9279
29 6 3.4716 -1.2044 -0.0007
30 7 2.1558 -1.1487 -0.0002
31 1 -0.3633 0.0001 -1.0276
32 1 -0.3633 -0.8900 0.5138
33 1 -0.3632 0.8900 0.5139
34 1 1.6444 2.1382 0.0005
35 1 4.1275 2.1264 -0.0001
36 1 4.6520 1.5652 -1.5997
37 1 6.0122 2.6941 -1.3703
38 1 5.7302 2.2714 -3.7612
39 1 5.7874 0.5130 -3.4871
40 1 8.0446 2.4730 -2.8691
41 1 7.9799 1.3876 -4.2780
42 1 9.5824 2.5312 -2.1077
43 1 10.7302 1.6823 -1.0208
44 1 12.4110 1.5161 -2.7407
45 1 11.6804 3.1071 -3.1399
46 1 11.7337 1.1722 -5.0292
47 1 10.2528 2.1561 -4.8266
48 1 10.6166 0.4143 -7.5984
49 1 8.3342 1.4973 -0.5471
50 1 8.2095 -0.2686 -0.3385
51 1 3.9669 -2.1641 -0.0007
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000963257782.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:50
Heat of formation + Delta-G solvation = 27.222146 kcal
Electronic energy + Delta-G solvation = -31000.246697 eV
Core-core repulsion = 27093.036409 eV
Total energy + Delta-G solvation = -3907.210288 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.37 seconds
Orbital eigenvalues (eV)
-41.06070 -39.68172 -38.26283 -36.47646 -33.81252 -32.83371 -32.59552 -32.14544
-31.20697 -29.35165 -28.43327 -26.73145 -25.40372 -24.57223 -23.96648 -22.85167
-22.51888 -21.32026 -20.31796 -19.52126 -18.37953 -17.48445 -16.82991 -16.64303
-16.56169 -15.83984 -15.16874 -15.03193 -14.70795 -14.60053 -14.43191 -14.22897
-13.96073 -13.81976 -13.51842 -13.26911 -12.99702 -12.84622 -12.66949 -12.59574
-12.31950 -12.15118 -12.02573 -11.86691 -11.57241 -11.14004 -10.90301 -10.86603
-10.76232 -10.49019 -10.29374 -10.25335 -10.07652 -9.97402 -9.93165 -9.77645
-9.65931 -9.53224 -9.44742 -9.21709 -8.58114 -8.50741 -6.77051 -5.74239
-3.08635 0.50311 0.89729 2.60061 2.94936 3.38126 3.45589 3.46886
3.48158 3.93983 4.30848 4.35051 4.48766 4.50536 4.70214 4.86968
4.98107 5.09920 5.17891 5.21348 5.22793 5.23370 5.37685 5.40172
5.44166 5.53806 5.60783 5.66697 5.71313 5.71994 5.76735 5.78859
5.80492 5.91339 5.95319 6.05932 6.16460 6.26568 6.29809 6.35964
6.44668 6.53864 6.60635 6.67248 6.76719 6.98109 7.02123 7.14589
7.37230 7.56371 7.63508 7.63879 7.82035 8.08966 8.29421 9.21478
9.82460 10.51118 11.37472
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.013724 B = 0.003000 C = 0.002722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2039.779363 B = 9331.382885 C =10284.452375
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C 0.142 3.858
3 C -0.179 4.179
4 C -0.044 4.044
5 C -0.181 4.181
6 C 0.562 3.438
7 O -0.536 6.536
8 N -0.596 5.596
9 C 0.095 3.905
10 C -0.135 4.135
11 C -0.105 4.105
12 C -0.105 4.105
13 H 0.071 0.929
14 C 0.168 3.832
15 H 0.034 0.966
16 C -0.130 4.130
17 C -0.150 4.150
18 C 0.174 3.826
19 N -0.590 5.590
20 C -0.222 4.222
21 H 0.073 0.927
22 C -0.004 4.004
23 N -0.917 5.917
24 Si 0.905 3.095
25 H -0.280 1.280
26 H -0.291 1.291
27 H -0.291 1.291
28 C 0.116 3.884
29 C 0.158 3.842
30 N -0.486 5.486
31 H 0.081 0.919
32 H 0.079 0.921
33 H 0.076 0.924
34 H 0.141 0.859
35 H 0.144 0.856
36 H 0.086 0.914
37 H 0.070 0.930
38 H 0.070 0.930
39 H 0.064 0.936
40 H 0.055 0.945
41 H 0.089 0.911
42 H 0.067 0.933
43 H 0.055 0.945
44 H 0.056 0.944
45 H 0.055 0.945
46 H 0.070 0.930
47 H 0.024 0.976
48 H 0.251 0.749
49 H 0.068 0.932
50 H 0.088 0.912
51 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.407 7.400 12.476 21.161
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.004 3.996
3 C -0.199 4.199
4 C -0.070 4.070
5 C -0.186 4.186
6 C 0.349 3.651
7 O -0.413 6.413
8 N -0.328 5.328
9 C -0.028 4.028
10 C -0.173 4.173
11 C -0.142 4.142
12 C -0.126 4.126
13 H 0.089 0.911
14 C 0.059 3.941
15 H 0.051 0.949
16 C -0.168 4.168
17 C -0.188 4.188
18 C 0.049 3.951
19 N -0.314 5.314
20 C -0.350 4.350
21 H 0.091 0.909
22 C -0.201 4.201
23 N -0.565 5.565
24 Si 0.736 3.264
25 H -0.205 1.205
26 H -0.218 1.218
27 H -0.218 1.218
28 C -0.006 4.006
29 C 0.000 4.000
30 N -0.195 5.195
31 H 0.100 0.900
32 H 0.098 0.902
33 H 0.095 0.905
34 H 0.159 0.841
35 H 0.162 0.838
36 H 0.104 0.896
37 H 0.088 0.912
38 H 0.088 0.912
39 H 0.083 0.917
40 H 0.073 0.927
41 H 0.107 0.893
42 H 0.085 0.915
43 H 0.074 0.926
44 H 0.075 0.925
45 H 0.074 0.926
46 H 0.088 0.912
47 H 0.042 0.958
48 H 0.061 0.939
49 H 0.086 0.914
50 H 0.106 0.894
51 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges -15.542 6.160 12.627 20.951
hybrid contribution 0.269 0.114 -0.807 0.858
sum -15.273 6.274 11.820 20.306
Atomic orbital electron populations
1.20779 0.88515 1.03710 1.03420 1.21538 0.97348 0.88378 0.92310
1.21907 0.94404 0.99573 1.04007 1.21841 0.94604 0.97502 0.93075
1.20979 0.94881 0.95626 1.07123 1.18090 0.86175 0.80382 0.80484
1.90794 1.71003 1.39039 1.40492 1.48080 1.08225 1.36460 1.40052
1.22108 0.97473 0.91584 0.91605 1.21874 0.98605 1.02349 0.94482
1.21491 0.92166 0.97631 1.02953 1.21973 0.98914 0.99670 0.92065
0.91066 1.20876 0.90485 0.94528 0.88177 0.94862 1.22694 0.98336
0.97769 0.97991 1.23010 0.97435 0.99413 0.98978 1.21421 0.95137
0.87382 0.91177 1.44477 1.62445 1.17978 1.06492 1.18993 1.38466
0.89936 0.87638 0.90897 1.24829 1.01735 0.97022 0.96504 1.69940
1.51660 1.24764 1.10099 0.86146 0.77595 0.81996 0.80686 1.20499
1.21816 1.21821 1.21876 0.77460 1.02598 0.98693 1.22884 0.88607
0.97799 0.90719 1.67617 1.09465 1.29031 1.13415 0.89996 0.90212
0.90476 0.84121 0.83831 0.89641 0.91204 0.91160 0.91741 0.92661
0.89261 0.91497 0.92580 0.92495 0.92617 0.91167 0.95847 0.93859
0.91401 0.89356 0.81800
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.66 10.16 36.01 0.37 -0.30 16
2 C 0.14 1.34 6.78 -82.51 -0.56 0.78 16
3 C -0.18 -1.45 9.72 -39.50 -0.38 -1.83 16
4 C -0.04 -0.41 7.45 -38.87 -0.29 -0.70 16
5 C -0.18 -2.23 5.20 -104.82 -0.55 -2.77 16
6 C 0.56 8.34 7.32 -12.33 -0.09 8.25 16
7 O -0.54 -9.74 16.42 5.32 0.09 -9.65 16
8 N -0.60 -8.23 2.98 -174.14 -0.52 -8.75 16
9 C 0.09 1.06 5.20 -3.93 -0.02 1.04 16
10 C -0.13 -1.82 6.06 -26.83 -0.16 -1.98 16
11 C -0.11 -1.74 4.74 -26.69 -0.13 -1.87 16
12 C -0.10 -1.83 2.11 -90.50 -0.19 -2.02 16
13 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16
14 C 0.17 3.26 2.95 -66.95 -0.20 3.06 16
15 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16
16 C -0.13 -2.14 5.11 -24.90 -0.13 -2.27 16
17 C -0.15 -2.72 7.08 -24.58 -0.17 -2.89 16
18 C 0.17 4.00 5.43 -2.53 -0.01 3.99 16
19 N -0.59 -14.05 2.31 -162.57 -0.38 -14.43 16
20 C -0.22 -5.91 9.84 -15.06 -0.15 -6.06 16
21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16
22 C 0.00 -0.12 5.47 -17.43 -0.10 -0.21 16
23 N -0.92 -26.00 10.53 55.49 0.58 -25.42 16
24 Si 0.90 21.87 29.55 -169.99 -5.02 16.84 16
25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16
27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
28 C 0.12 1.75 5.57 -3.71 -0.02 1.72 16
29 C 0.16 1.99 10.86 -17.13 -0.19 1.80 16
30 N -0.49 -5.84 10.25 -9.13 -0.09 -5.94 16
31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
33 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16
34 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16
35 H 0.14 1.06 6.62 -52.49 -0.35 0.71 16
36 H 0.09 0.83 4.21 -51.93 -0.22 0.61 16
37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
40 H 0.05 0.85 6.09 -51.93 -0.32 0.54 16
41 H 0.09 1.88 7.55 -51.93 -0.39 1.49 16
42 H 0.07 1.03 5.52 -51.93 -0.29 0.74 16
43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
45 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
46 H 0.07 1.84 6.86 -51.93 -0.36 1.49 16
47 H 0.02 0.58 8.08 -51.92 -0.42 0.16 16
48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16
49 H 0.07 0.93 6.96 -51.93 -0.36 0.57 16
50 H 0.09 1.46 7.03 -51.93 -0.36 1.10 16
51 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16
LS Contribution 390.98 15.07 5.89 5.89
Total: -1.00 -31.46 390.98 -10.51 -41.97
By element:
Atomic # 1 Polarization: 9.82 SS G_CDS: -8.09 Total: 1.73 kcal
Atomic # 6 Polarization: 0.72 SS G_CDS: -2.97 Total: -2.25 kcal
Atomic # 7 Polarization: -54.13 SS G_CDS: -0.40 Total: -54.53 kcal
Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -31.46 -10.51 -41.97 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000963257782.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.194 kcal
(2) G-P(sol) polarization free energy of solvation -31.464 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.730 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.222 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.37 seconds