Wall clock time and date at job start Sat Apr 11 2020 07:01:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50709 * 1
3 3 C 1.38345 * 119.45804 * 2 1
4 4 C 1.38361 * 119.29961 * 180.02562 * 3 2 1
5 5 C 1.40023 * 118.28961 * 0.27427 * 4 3 2
6 6 C 1.47837 * 120.56220 * 179.70108 * 5 4 3
7 7 O 1.21557 * 120.00313 * 134.76749 * 6 5 4
8 8 N 1.34780 * 120.00234 * 314.77443 * 6 5 4
9 9 C 1.46929 * 120.62714 * 3.78645 * 8 6 5
10 10 C 1.52761 * 109.00581 * 233.58683 * 9 8 6
11 11 C 1.53042 * 109.38401 * 305.59049 * 10 9 8
12 12 C 1.53040 * 109.53977 * 61.24059 * 11 10 9
13 13 H 1.08992 * 109.49556 * 58.58750 * 12 11 10
14 14 C 1.52995 * 109.49735 * 178.68596 * 12 11 10
15 15 H 1.09000 * 109.87284 * 180.29664 * 14 12 11
16 16 C 1.54327 * 109.88570 * 59.12063 * 14 12 11
17 17 C 1.55154 * 102.94289 * 218.39227 * 16 14 12
18 18 C 1.54912 * 101.58345 * 35.49538 * 17 16 14
19 19 N 1.47027 * 109.88258 * 301.31145 * 14 12 11
20 20 C 1.36939 * 125.64586 * 298.32123 * 19 14 12
21 21 H 1.07997 * 120.00131 * 346.37818 * 20 19 14
22 22 C 1.38813 * 119.99521 * 166.37370 * 20 19 14
23 23 N 1.31609 * 120.00341 * 0.02562 * 22 20 19
24 24 Si 1.86800 * 119.99580 * 180.02562 * 22 20 19
25 25 H 1.48504 * 109.47302 * 0.02562 * 24 22 20
26 26 H 1.48503 * 109.47155 * 120.00014 * 24 22 20
27 27 H 1.48497 * 109.47217 * 240.00327 * 24 22 20
28 28 C 1.46926 * 120.63036 * 184.06924 * 8 6 5
29 29 C 1.39529 * 118.87867 * 359.44275 * 5 4 3
30 30 N 1.31692 * 120.56377 * 0.57064 * 29 5 4
31 31 H 1.08998 * 109.47007 * 89.99692 * 1 2 3
32 32 H 1.09002 * 109.46919 * 209.99650 * 1 2 3
33 33 H 1.08999 * 109.46564 * 329.99894 * 1 2 3
34 34 H 1.08000 * 120.35753 * 0.03058 * 3 2 1
35 35 H 1.08000 * 120.85591 * 180.02562 * 4 3 2
36 36 H 1.09000 * 109.58526 * 353.41751 * 9 8 6
37 37 H 1.08993 * 109.58691 * 113.84777 * 9 8 6
38 38 H 1.09002 * 109.56140 * 185.55477 * 10 9 8
39 39 H 1.09002 * 109.36474 * 65.50280 * 10 9 8
40 40 H 1.09002 * 109.45732 * 301.21703 * 11 10 9
41 41 H 1.09003 * 109.45998 * 181.26471 * 11 10 9
42 42 H 1.09005 * 110.71623 * 336.75219 * 16 14 12
43 43 H 1.08991 * 110.71981 * 100.02433 * 16 14 12
44 44 H 1.09001 * 111.00145 * 277.42476 * 17 16 14
45 45 H 1.09000 * 111.00586 * 153.57448 * 17 16 14
46 46 H 1.09006 * 110.36806 * 204.15282 * 18 17 16
47 47 H 1.09009 * 110.45421 * 81.88000 * 18 17 16
48 48 H 0.97003 * 120.00073 * 179.97438 * 23 22 20
49 49 H 1.09004 * 109.58600 * 246.15006 * 28 8 6
50 50 H 1.08994 * 109.59012 * 6.57748 * 28 8 6
51 51 H 1.08000 * 119.71567 * 180.29036 * 29 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1875 1.2046 0.0000
4 6 3.5711 1.2008 -0.0005
5 6 4.2312 -0.0340 -0.0070
6 6 5.7083 -0.0967 -0.0145
7 8 6.2878 -0.8651 0.7281
8 7 6.4123 0.6982 -0.8446
9 6 5.7313 1.6900 -1.6878
10 6 6.1520 1.4802 -3.1413
11 6 7.6790 1.5147 -3.2381
12 6 8.2711 0.3838 -2.3940
13 1 7.8865 -0.5731 -2.7467
14 6 9.7960 0.3989 -2.5175
15 1 10.2239 -0.4079 -1.9225
16 6 10.3480 1.7582 -2.0387
17 6 11.5010 2.0368 -3.0388
18 6 10.9260 1.4439 -4.3494
19 7 10.1851 0.2416 -3.9266
20 6 9.9061 -0.8425 -4.7153
21 1 9.5563 -1.7607 -4.2671
22 6 10.0730 -0.7612 -6.0910
23 7 10.4997 0.3576 -6.6371
24 14 9.6918 -2.2398 -7.1669
25 1 9.2309 -3.3660 -6.3156
26 1 8.6249 -1.8844 -8.1368
27 1 10.9159 -2.6445 -7.9038
28 6 7.8749 0.5850 -0.9279
29 6 3.4716 -1.2044 -0.0007
30 7 2.1558 -1.1487 -0.0002
31 1 -0.3633 0.0001 -1.0276
32 1 -0.3633 -0.8900 0.5138
33 1 -0.3632 0.8900 0.5139
34 1 1.6444 2.1382 0.0005
35 1 4.1275 2.1264 -0.0001
36 1 4.6520 1.5652 -1.5997
37 1 6.0122 2.6941 -1.3703
38 1 5.7302 2.2714 -3.7612
39 1 5.7874 0.5130 -3.4871
40 1 8.0446 2.4730 -2.8691
41 1 7.9799 1.3876 -4.2780
42 1 9.5824 2.5312 -2.1077
43 1 10.7302 1.6823 -1.0208
44 1 12.4110 1.5161 -2.7407
45 1 11.6804 3.1071 -3.1399
46 1 11.7337 1.1722 -5.0292
47 1 10.2528 2.1561 -4.8266
48 1 10.6166 0.4143 -7.5984
49 1 8.3342 1.4973 -0.5471
50 1 8.2095 -0.2686 -0.3385
51 1 3.9669 -2.1641 -0.0007
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000963257782.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:49
Heat of formation + Delta-G solvation = 9.274521 kcal
Electronic energy + Delta-G solvation = -31001.024964 eV
Core-core repulsion = 27093.036409 eV
Total energy + Delta-G solvation = -3907.988555 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-42.01699 -40.76192 -39.66244 -37.83320 -34.98164 -34.34775 -33.55061 -33.27218
-32.47261 -31.20492 -29.20564 -28.16665 -26.56090 -26.41788 -24.89429 -23.78016
-23.69717 -22.54580 -21.92334 -20.82743 -19.80156 -18.72019 -18.32212 -17.73438
-17.47603 -16.95986 -16.73565 -16.41782 -15.95728 -15.73046 -15.60282 -15.48900
-15.30913 -14.96446 -14.55014 -14.34734 -14.18329 -14.01101 -13.81628 -13.62345
-13.44101 -13.22526 -13.16606 -13.09381 -12.98676 -12.88604 -12.77438 -12.45104
-12.01333 -12.00198 -11.85548 -11.77406 -11.61803 -11.47289 -11.32719 -11.19194
-10.93581 -10.76914 -10.64894 -10.47283 -10.03418 -9.66643 -8.75164 -7.85163
-5.18942 -0.30581 0.16055 1.40249 1.42022 1.50416 1.51112 1.90822
2.47676 2.67054 3.17255 3.32901 3.42810 3.65528 3.70667 3.73032
3.82560 3.90737 4.02223 4.06508 4.11892 4.25532 4.29347 4.32278
4.37097 4.42141 4.52104 4.56049 4.65236 4.70511 4.75403 4.79388
4.81282 4.81869 4.85758 4.91682 4.95331 5.07335 5.09603 5.15932
5.19388 5.23827 5.29956 5.42255 5.49713 5.51230 5.58697 5.62152
5.67789 5.73196 5.84698 6.27172 6.28870 6.86035 6.97132 7.14647
7.83091 8.49464 9.25202
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.013724 B = 0.003000 C = 0.002722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2039.779363 B = 9331.382885 C =10284.452375
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C 0.132 3.868
3 C -0.164 4.164
4 C -0.039 4.039
5 C -0.198 4.198
6 C 0.560 3.440
7 O -0.580 6.580
8 N -0.596 5.596
9 C 0.098 3.902
10 C -0.130 4.130
11 C -0.095 4.095
12 C -0.093 4.093
13 H 0.028 0.972
14 C 0.157 3.843
15 H 0.019 0.981
16 C -0.115 4.115
17 C -0.137 4.137
18 C 0.179 3.821
19 N -0.606 5.606
20 C -0.225 4.225
21 H 0.062 0.938
22 C -0.055 4.055
23 N -0.941 5.941
24 Si 0.961 3.039
25 H -0.276 1.276
26 H -0.291 1.291
27 H -0.292 1.292
28 C 0.126 3.874
29 C 0.138 3.862
30 N -0.511 5.511
31 H 0.092 0.908
32 H 0.071 0.929
33 H 0.106 0.894
34 H 0.184 0.816
35 H 0.173 0.827
36 H 0.107 0.893
37 H 0.106 0.894
38 H 0.094 0.906
39 H 0.038 0.962
40 H 0.077 0.923
41 H 0.037 0.963
42 H 0.086 0.914
43 H 0.088 0.912
44 H 0.057 0.943
45 H 0.085 0.915
46 H 0.029 0.971
47 H 0.001 0.999
48 H 0.246 0.754
49 H 0.097 0.903
50 H 0.068 0.932
51 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.699 10.664 14.305 25.132
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.006 4.006
3 C -0.183 4.183
4 C -0.065 4.065
5 C -0.203 4.203
6 C 0.349 3.651
7 O -0.461 6.461
8 N -0.327 5.327
9 C -0.023 4.023
10 C -0.168 4.168
11 C -0.133 4.133
12 C -0.114 4.114
13 H 0.046 0.954
14 C 0.050 3.950
15 H 0.037 0.963
16 C -0.153 4.153
17 C -0.175 4.175
18 C 0.054 3.946
19 N -0.330 5.330
20 C -0.355 4.355
21 H 0.080 0.920
22 C -0.249 4.249
23 N -0.590 5.590
24 Si 0.791 3.209
25 H -0.201 1.201
26 H -0.218 1.218
27 H -0.219 1.219
28 C 0.004 3.996
29 C -0.020 4.020
30 N -0.221 5.221
31 H 0.110 0.890
32 H 0.090 0.910
33 H 0.125 0.875
34 H 0.202 0.798
35 H 0.190 0.810
36 H 0.125 0.875
37 H 0.124 0.876
38 H 0.113 0.887
39 H 0.057 0.943
40 H 0.096 0.904
41 H 0.055 0.945
42 H 0.105 0.895
43 H 0.106 0.894
44 H 0.076 0.924
45 H 0.103 0.897
46 H 0.047 0.953
47 H 0.019 0.981
48 H 0.055 0.945
49 H 0.115 0.885
50 H 0.087 0.913
51 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -17.851 9.436 14.470 24.841
hybrid contribution 0.914 -0.938 -1.370 1.895
sum -16.937 8.498 13.101 23.037
Atomic orbital electron populations
1.20900 0.86169 1.04835 1.04356 1.22234 0.99003 0.88300 0.91029
1.22356 0.93894 1.00615 1.01473 1.22166 0.95412 0.97027 0.91905
1.20789 0.93096 0.97002 1.09420 1.18513 0.87314 0.79446 0.79850
1.90762 1.72125 1.40760 1.42491 1.48142 1.07667 1.36801 1.40052
1.22335 0.98520 0.92360 0.89085 1.21830 0.96083 1.01952 0.96967
1.21340 0.94594 0.97905 0.99462 1.21727 0.97346 0.98138 0.94223
0.95380 1.21094 0.91921 0.96368 0.85591 0.96276 1.22674 0.97917
0.95754 0.98933 1.22888 0.97733 1.00776 0.96151 1.21210 0.93411
0.86839 0.93137 1.44652 1.62961 1.17462 1.07944 1.19138 1.37335
0.90684 0.88308 0.91970 1.25457 1.02532 0.99329 0.97592 1.70118
1.52981 1.26191 1.09720 0.85268 0.77088 0.79557 0.79027 1.20054
1.21845 1.21873 1.21648 0.78836 1.03145 0.96001 1.22748 0.89287
0.97731 0.92219 1.67621 1.09046 1.30938 1.14519 0.88977 0.90965
0.87529 0.79828 0.80991 0.87518 0.87551 0.88729 0.94318 0.90447
0.94457 0.89520 0.89355 0.92398 0.89676 0.95268 0.98083 0.94487
0.88514 0.91329 0.83408
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.96 10.16 71.24 0.72 -0.24 16
2 C 0.13 2.14 6.78 42.57 0.29 2.43 16
3 C -0.16 -1.91 9.72 22.32 0.22 -1.69 16
4 C -0.04 -0.59 7.45 22.73 0.17 -0.42 16
5 C -0.20 -4.66 5.20 -19.99 -0.10 -4.76 16
6 C 0.56 16.44 7.32 86.78 0.64 17.08 16
7 O -0.58 -21.79 16.42 -3.90 -0.06 -21.86 16
8 N -0.60 -15.49 2.98 -823.14 -2.45 -17.94 16
9 C 0.10 1.84 5.20 86.22 0.45 2.29 16
10 C -0.13 -3.29 6.06 30.53 0.19 -3.11 16
11 C -0.10 -3.11 4.74 30.62 0.15 -2.96 16
12 C -0.09 -3.30 2.11 -10.72 -0.02 -3.32 16
13 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16
14 C 0.16 6.17 2.95 45.34 0.13 6.31 16
15 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16
16 C -0.12 -3.48 5.11 31.78 0.16 -3.32 16
17 C -0.14 -4.75 7.08 31.99 0.23 -4.52 16
18 C 0.18 8.49 5.43 86.86 0.47 8.96 16
19 N -0.61 -30.03 2.31 -668.25 -1.54 -31.57 16
20 C -0.22 -12.62 9.84 84.03 0.83 -11.79 16
21 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16
22 C -0.06 -3.16 5.47 84.86 0.46 -2.69 16
23 N -0.94 -55.80 10.53 21.65 0.23 -55.57 16
24 Si 0.96 46.77 29.55 68.60 2.03 48.80 16
25 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16
26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16
27 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16
28 C 0.13 3.67 5.57 86.36 0.48 4.15 16
29 C 0.14 3.55 10.86 85.03 0.92 4.48 16
30 N -0.51 -12.05 10.25 -182.81 -1.87 -13.92 16
31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16
32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
33 H 0.11 0.36 8.07 -2.39 -0.02 0.34 16
34 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16
35 H 0.17 1.55 6.62 -2.91 -0.02 1.53 16
36 H 0.11 1.62 4.21 -2.39 -0.01 1.61 16
37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16
38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16
39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16
40 H 0.08 2.16 6.09 -2.39 -0.01 2.15 16
41 H 0.04 1.61 7.55 -2.39 -0.02 1.60 16
42 H 0.09 2.30 5.52 -2.38 -0.01 2.29 16
43 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16
44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
45 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16
46 H 0.03 1.60 6.86 -2.38 -0.02 1.58 16
47 H 0.00 0.06 8.08 -2.38 -0.02 0.04 16
48 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16
49 H 0.10 2.29 6.96 -2.38 -0.02 2.27 16
50 H 0.07 2.30 7.03 -2.39 -0.02 2.28 16
51 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16
Total: -1.00 -76.32 390.98 3.62 -72.70
By element:
Atomic # 1 Polarization: 11.57 SS G_CDS: 0.92 Total: 12.49 kcal
Atomic # 6 Polarization: 0.49 SS G_CDS: 6.38 Total: 6.87 kcal
Atomic # 7 Polarization: -113.36 SS G_CDS: -5.64 Total: -119.00 kcal
Atomic # 8 Polarization: -21.79 SS G_CDS: -0.06 Total: -21.86 kcal
Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal
Total: -76.32 3.62 -72.70 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000963257782.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.975 kcal
(2) G-P(sol) polarization free energy of solvation -76.322 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.653 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.700 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.275 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.35 seconds