Wall clock time and date at job start Sat Apr 11 2020 07:01:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46422 * 111.00084 * 2 1
4 4 C 1.53373 * 108.66759 * 287.84688 * 3 2 1
5 5 C 1.53034 * 107.94153 * 291.79283 * 4 3 2
6 6 H 1.09006 * 109.40943 * 287.27248 * 5 4 3
7 7 C 1.50696 * 109.44297 * 167.36512 * 5 4 3
8 8 O 1.21286 * 120.00118 * 334.30700 * 7 5 4
9 9 N 1.34784 * 119.99992 * 154.30552 * 7 5 4
10 10 C 1.46505 * 119.99677 * 174.65338 * 9 7 5
11 11 C 1.53000 * 110.77824 * 303.23718 * 10 9 7
12 12 C 1.55153 * 110.71615 * 180.02562 * 10 9 7
13 13 C 1.54909 * 101.57887 * 277.13084 * 12 10 9
14 14 N 1.47422 * 104.93075 * 322.94020 * 13 12 10
15 15 C 1.36935 * 125.64935 * 204.15173 * 14 13 12
16 16 H 1.07998 * 120.00346 * 180.02562 * 15 14 13
17 17 C 1.38818 * 119.99973 * 0.02562 * 15 14 13
18 18 N 1.31617 * 119.99878 * 0.02562 * 17 15 14
19 19 Si 1.86801 * 120.00005 * 179.97438 * 17 15 14
20 20 H 1.48501 * 109.46943 * 90.00093 * 19 17 15
21 21 H 1.48499 * 109.47324 * 210.00194 * 19 17 15
22 22 H 1.48507 * 109.47221 * 330.00318 * 19 17 15
23 23 C 1.47288 * 108.55889 * 24.15528 * 14 13 12
24 24 C 1.50808 * 109.66434 * 47.30725 * 5 4 3
25 25 C 1.38606 * 118.13501 * 164.30723 * 24 5 4
26 26 C 1.38055 * 120.48605 * 179.73359 * 25 24 5
27 27 C 1.38311 * 119.89281 * 359.95772 * 26 25 24
28 28 C 1.37808 * 119.94900 * 0.14347 * 27 26 25
29 29 C 1.38377 * 122.00236 * 344.25534 * 24 5 4
30 30 H 1.08998 * 109.47316 * 182.76421 * 1 2 3
31 31 H 1.08998 * 109.47191 * 302.77314 * 1 2 3
32 32 H 1.09007 * 109.46575 * 62.76697 * 1 2 3
33 33 H 1.08997 * 109.60771 * 47.60709 * 3 2 1
34 34 H 1.09007 * 109.60795 * 168.09721 * 3 2 1
35 35 H 1.09004 * 109.77110 * 172.17702 * 4 3 2
36 36 H 1.09000 * 109.76604 * 51.39983 * 4 3 2
37 37 H 0.96993 * 120.00483 * 354.65244 * 9 7 5
38 38 H 1.09004 * 109.47384 * 296.76527 * 11 10 9
39 39 H 1.08999 * 109.47477 * 56.76485 * 11 10 9
40 40 H 1.09003 * 109.47460 * 176.76484 * 11 10 9
41 41 H 1.09008 * 111.00249 * 159.06311 * 12 10 9
42 42 H 1.08996 * 111.00836 * 35.21131 * 12 10 9
43 43 H 1.09001 * 110.36459 * 81.83386 * 13 12 10
44 44 H 1.08998 * 110.37241 * 204.04381 * 13 12 10
45 45 H 0.96996 * 119.99661 * 179.97438 * 18 17 15
46 46 H 1.09007 * 109.85533 * 239.50148 * 23 14 13
47 47 H 1.09000 * 110.00466 * 118.43357 * 23 14 13
48 48 H 1.08001 * 119.75736 * 359.75420 * 25 24 5
49 49 H 1.08005 * 120.05672 * 179.97438 * 26 25 24
50 50 H 1.08002 * 120.02779 * 180.11888 * 27 26 25
51 51 H 1.07998 * 119.78775 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9938 1.3670 0.0000
4 6 1.7540 1.9849 -1.3831
5 6 2.6486 1.2545 -2.3872
6 1 3.6852 1.5551 -2.2344
7 6 2.2245 1.6108 -3.7887
8 8 1.0838 1.9605 -4.0067
9 7 3.1129 1.5410 -4.7999
10 6 2.6736 1.7732 -6.1782
11 6 1.5468 0.8105 -6.5582
12 6 3.8645 1.6399 -7.1636
13 6 4.5105 3.0442 -7.0625
14 7 3.3757 3.9754 -6.9267
15 6 3.3880 5.3029 -7.2624
16 1 2.5010 5.9032 -7.1239
17 6 4.5407 5.8771 -7.7808
18 7 5.6216 5.1454 -7.9500
19 14 4.5573 7.6878 -8.2394
20 1 4.9827 8.4918 -7.0656
21 1 5.5075 7.9061 -9.3596
22 1 3.1948 8.1051 -8.6576
23 6 2.2285 3.2383 -6.3698
24 6 2.5236 -0.2352 -2.1886
25 6 2.9851 -1.0697 -3.1944
26 6 2.8997 -2.4411 -3.0609
27 6 2.3508 -2.9894 -1.9158
28 6 1.8879 -2.1659 -0.9125
29 6 1.9686 -0.7782 -1.0432
30 1 -0.3634 -1.0264 0.0496
31 1 -0.3633 0.5563 0.8641
32 1 -0.3633 0.4703 -0.9138
33 1 1.4786 1.9565 0.7583
34 1 3.0629 1.3484 0.2118
35 1 2.0103 3.0441 -1.3632
36 1 0.7080 1.8633 -1.6648
37 1 4.0429 1.3369 -4.6153
38 1 1.9177 -0.2139 -6.5261
39 1 0.7220 0.9204 -5.8541
40 1 1.1976 1.0391 -7.5652
41 1 3.5133 1.4435 -8.1767
42 1 4.5585 0.8660 -6.8355
43 1 5.1561 3.1026 -6.1862
44 1 5.0778 3.2669 -7.9661
45 1 6.4268 5.5465 -8.3126
46 1 1.3882 3.2828 -7.0628
47 1 1.9403 3.6669 -5.4100
48 1 3.4151 -0.6440 -4.0890
49 1 3.2611 -3.0849 -3.8492
50 1 2.2846 -4.0620 -1.8083
51 1 1.4601 -2.5968 -0.0193
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001046383384.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:25
Heat of formation + Delta-G solvation = 31.218676 kcal
Electronic energy + Delta-G solvation = -31512.309238 eV
Core-core repulsion = 27605.272253 eV
Total energy + Delta-G solvation = -3907.036985 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-41.19796 -39.57410 -37.43037 -37.07541 -34.08166 -33.95005 -31.80492 -30.55019
-30.06825 -29.93755 -28.68589 -27.44659 -25.69271 -24.81815 -23.73041 -23.28191
-22.48701 -20.85463 -20.27480 -19.47842 -19.07240 -17.53253 -16.95838 -16.59433
-16.33942 -15.93674 -15.58108 -14.83004 -14.69734 -14.56678 -14.36510 -14.18193
-13.81627 -13.67932 -13.38333 -13.17100 -13.05067 -12.76725 -12.59925 -12.31900
-12.23866 -12.14590 -12.08652 -11.91928 -11.72035 -11.57706 -11.51203 -11.04516
-10.95021 -10.87059 -10.79880 -10.42862 -10.35015 -10.09304 -9.96446 -9.69995
-9.57153 -9.30182 -8.80180 -8.66938 -8.61668 -8.09660 -6.81564 -5.65398
-3.05680 1.15700 1.23716 2.84533 3.33383 3.40292 3.45412 3.47347
3.49478 3.74497 4.44958 4.49346 4.52647 4.66019 4.78023 4.93032
4.99859 5.07194 5.10753 5.20149 5.23226 5.27740 5.35850 5.38690
5.41218 5.49703 5.53679 5.55198 5.56740 5.60662 5.72396 5.79065
5.88015 6.02449 6.06791 6.14962 6.16006 6.21589 6.27234 6.34853
6.40743 6.44887 6.50210 6.59614 6.69845 6.77164 6.82522 7.13258
7.18148 7.44070 7.62909 7.78007 7.85104 8.34777 8.49229 9.22968
9.83483 10.48813 11.38858
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.017583 B = 0.002990 C = 0.002758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1592.037661 B = 9362.759871 C =10150.676675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.503 5.503
3 C 0.056 3.944
4 C -0.143 4.143
5 C -0.066 4.066
6 H 0.101 0.899
7 C 0.528 3.472
8 O -0.531 6.531
9 N -0.707 5.707
10 C 0.159 3.841
11 C -0.150 4.150
12 C -0.146 4.146
13 C 0.152 3.848
14 N -0.604 5.604
15 C -0.217 4.217
16 H 0.076 0.924
17 C -0.013 4.013
18 N -0.925 5.925
19 Si 0.914 3.086
20 H -0.290 1.290
21 H -0.290 1.290
22 H -0.281 1.281
23 C 0.137 3.863
24 C -0.105 4.105
25 C -0.101 4.101
26 C -0.132 4.132
27 C -0.107 4.107
28 C -0.123 4.123
29 C 0.118 3.882
30 H 0.071 0.929
31 H 0.074 0.926
32 H 0.041 0.959
33 H 0.087 0.913
34 H 0.082 0.918
35 H 0.081 0.919
36 H 0.086 0.914
37 H 0.397 0.603
38 H 0.049 0.951
39 H 0.071 0.929
40 H 0.064 0.936
41 H 0.076 0.924
42 H 0.062 0.938
43 H 0.010 0.990
44 H 0.108 0.892
45 H 0.251 0.749
46 H 0.029 0.971
47 H 0.032 0.968
48 H 0.126 0.874
49 H 0.122 0.878
50 H 0.123 0.877
51 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.576 -16.489 14.412 22.598
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 N -0.220 5.220
3 C -0.071 4.071
4 C -0.183 4.183
5 C -0.088 4.088
6 H 0.119 0.881
7 C 0.313 3.687
8 O -0.408 6.408
9 N -0.358 5.358
10 C 0.074 3.926
11 C -0.208 4.208
12 C -0.185 4.185
13 C 0.028 3.972
14 N -0.330 5.330
15 C -0.345 4.345
16 H 0.094 0.906
17 C -0.208 4.208
18 N -0.574 5.574
19 Si 0.745 3.255
20 H -0.217 1.217
21 H -0.217 1.217
22 H -0.207 1.207
23 C 0.011 3.989
24 C -0.108 4.108
25 C -0.120 4.120
26 C -0.150 4.150
27 C -0.126 4.126
28 C -0.143 4.143
29 C 0.022 3.978
30 H 0.090 0.910
31 H 0.093 0.907
32 H 0.059 0.941
33 H 0.105 0.895
34 H 0.101 0.899
35 H 0.100 0.900
36 H 0.104 0.896
37 H 0.232 0.768
38 H 0.068 0.932
39 H 0.090 0.910
40 H 0.083 0.917
41 H 0.095 0.905
42 H 0.081 0.919
43 H 0.027 0.973
44 H 0.126 0.874
45 H 0.062 0.938
46 H 0.047 0.953
47 H 0.050 0.950
48 H 0.144 0.856
49 H 0.140 0.860
50 H 0.141 0.859
51 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -6.163 -16.247 14.611 22.703
hybrid contribution 0.457 1.241 -0.787 1.539
sum -5.706 -15.006 13.825 21.186
Atomic orbital electron populations
1.22498 0.85026 1.02757 1.01621 1.58768 1.08461 1.13311 1.41412
1.22263 1.01425 0.86989 0.96442 1.22104 1.01261 1.00353 0.94541
1.20254 1.02014 0.92643 0.93852 0.88101 1.20106 0.85747 0.76935
0.85907 1.90649 1.19684 1.46317 1.84140 1.46112 1.11678 1.71404
1.06585 1.21338 0.95183 0.95855 0.80263 1.22027 0.98889 0.97783
1.02110 1.23356 0.96077 1.00993 0.98107 1.21928 0.89743 0.83318
1.02259 1.44558 1.07991 1.06470 1.74001 1.19092 0.97376 0.83743
1.34336 0.90592 1.24757 0.95787 0.98343 1.01904 1.69770 1.02122
1.33858 1.51635 0.86071 0.77214 0.84482 0.77757 1.21714 1.21663
1.20707 1.21641 0.91216 0.89182 0.96887 1.19511 1.03605 0.93733
0.93983 1.21193 0.98833 0.93663 0.98290 1.21047 1.00933 0.94827
0.98232 1.20996 0.98290 0.99589 0.93710 1.20986 1.02260 0.91553
0.99495 1.18435 0.98171 0.92581 0.88624 0.91047 0.90725 0.94083
0.89469 0.89922 0.89990 0.89559 0.76824 0.93176 0.90982 0.91731
0.90546 0.91931 0.97254 0.87434 0.93815 0.95339 0.94974 0.85609
0.85952 0.85922 0.85723
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 9.22 60.07 0.55 0.79 16
2 N -0.50 -5.21 4.74 -179.13 -0.85 -6.06 16
3 C 0.06 0.54 5.81 -3.89 -0.02 0.52 16
4 C -0.14 -1.69 5.10 -26.52 -0.14 -1.83 16
5 C -0.07 -0.84 2.66 -92.86 -0.25 -1.09 16
6 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16
7 C 0.53 8.34 5.46 -10.98 -0.06 8.28 16
8 O -0.53 -10.12 12.80 5.55 0.07 -10.05 16
9 N -0.71 -10.97 3.96 -45.91 -0.18 -11.15 16
10 C 0.16 2.82 0.81 -129.99 -0.10 2.71 16
11 C -0.15 -2.38 8.43 37.16 0.31 -2.06 16
12 C -0.15 -2.62 6.07 -24.59 -0.15 -2.77 16
13 C 0.15 3.59 5.86 -2.53 -0.01 3.57 16
14 N -0.60 -15.64 3.40 -169.86 -0.58 -16.22 16
15 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16
16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16
17 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16
18 N -0.92 -26.75 10.09 55.49 0.56 -26.19 16
19 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16
20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
23 C 0.14 3.07 6.18 -2.92 -0.02 3.05 16
24 C -0.11 -1.29 5.40 -104.38 -0.56 -1.85 16
25 C -0.10 -1.18 9.07 -39.51 -0.36 -1.53 16
26 C -0.13 -1.34 10.05 -39.62 -0.40 -1.74 16
27 C -0.11 -1.01 10.04 -39.71 -0.40 -1.41 16
28 C -0.12 -1.25 9.29 -39.22 -0.36 -1.62 16
29 C 0.12 1.36 5.12 -83.85 -0.43 0.93 16
30 H 0.07 0.58 7.70 -51.93 -0.40 0.19 16
31 H 0.07 0.54 8.05 -51.93 -0.42 0.13 16
32 H 0.04 0.43 6.60 -51.92 -0.34 0.09 16
33 H 0.09 0.69 7.98 -51.93 -0.41 0.28 16
34 H 0.08 0.77 8.11 -51.92 -0.42 0.35 16
35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
36 H 0.09 1.17 5.75 -51.93 -0.30 0.87 16
37 H 0.40 5.41 8.07 -40.82 -0.33 5.08 16
38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
39 H 0.07 1.25 6.16 -51.93 -0.32 0.93 16
40 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16
41 H 0.08 1.36 8.05 -51.92 -0.42 0.94 16
42 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16
43 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16
44 H 0.11 2.87 5.86 -51.93 -0.30 2.56 16
45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
46 H 0.03 0.66 7.77 -51.92 -0.40 0.25 16
47 H 0.03 0.78 6.74 -51.93 -0.35 0.43 16
48 H 0.13 1.44 6.04 -52.49 -0.32 1.12 16
49 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16
50 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16
51 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16
LS Contribution 388.12 15.07 5.85 5.85
Total: -1.00 -32.41 388.12 -10.88 -43.29
By element:
Atomic # 1 Polarization: 14.14 SS G_CDS: -8.08 Total: 6.06 kcal
Atomic # 6 Polarization: -0.17 SS G_CDS: -2.65 Total: -2.82 kcal
Atomic # 7 Polarization: -58.57 SS G_CDS: -1.05 Total: -59.62 kcal
Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.05 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -32.41 -10.88 -43.29 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046383384.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.507 kcal
(2) G-P(sol) polarization free energy of solvation -32.407 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.100 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.219 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds