Wall clock time and date at job start Sat Apr 11 2020 07:01:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46422 * 111.00084 * 2 1
4 4 C 1.53373 * 108.66759 * 287.84688 * 3 2 1
5 5 C 1.53034 * 107.94153 * 291.79283 * 4 3 2
6 6 H 1.09006 * 109.40943 * 287.27248 * 5 4 3
7 7 C 1.50696 * 109.44297 * 167.36512 * 5 4 3
8 8 O 1.21286 * 120.00118 * 334.30700 * 7 5 4
9 9 N 1.34784 * 119.99992 * 154.30552 * 7 5 4
10 10 C 1.46505 * 119.99677 * 174.65338 * 9 7 5
11 11 C 1.53000 * 110.77824 * 303.23718 * 10 9 7
12 12 C 1.55153 * 110.71615 * 180.02562 * 10 9 7
13 13 C 1.54909 * 101.57887 * 277.13084 * 12 10 9
14 14 N 1.47422 * 104.93075 * 322.94020 * 13 12 10
15 15 C 1.36935 * 125.64935 * 204.15173 * 14 13 12
16 16 H 1.07998 * 120.00346 * 180.02562 * 15 14 13
17 17 C 1.38818 * 119.99973 * 0.02562 * 15 14 13
18 18 N 1.31617 * 119.99878 * 0.02562 * 17 15 14
19 19 Si 1.86801 * 120.00005 * 179.97438 * 17 15 14
20 20 H 1.48501 * 109.46943 * 90.00093 * 19 17 15
21 21 H 1.48499 * 109.47324 * 210.00194 * 19 17 15
22 22 H 1.48507 * 109.47221 * 330.00318 * 19 17 15
23 23 C 1.47288 * 108.55889 * 24.15528 * 14 13 12
24 24 C 1.50808 * 109.66434 * 47.30725 * 5 4 3
25 25 C 1.38606 * 118.13501 * 164.30723 * 24 5 4
26 26 C 1.38055 * 120.48605 * 179.73359 * 25 24 5
27 27 C 1.38311 * 119.89281 * 359.95772 * 26 25 24
28 28 C 1.37808 * 119.94900 * 0.14347 * 27 26 25
29 29 C 1.38377 * 122.00236 * 344.25534 * 24 5 4
30 30 H 1.08998 * 109.47316 * 182.76421 * 1 2 3
31 31 H 1.08998 * 109.47191 * 302.77314 * 1 2 3
32 32 H 1.09007 * 109.46575 * 62.76697 * 1 2 3
33 33 H 1.08997 * 109.60771 * 47.60709 * 3 2 1
34 34 H 1.09007 * 109.60795 * 168.09721 * 3 2 1
35 35 H 1.09004 * 109.77110 * 172.17702 * 4 3 2
36 36 H 1.09000 * 109.76604 * 51.39983 * 4 3 2
37 37 H 0.96993 * 120.00483 * 354.65244 * 9 7 5
38 38 H 1.09004 * 109.47384 * 296.76527 * 11 10 9
39 39 H 1.08999 * 109.47477 * 56.76485 * 11 10 9
40 40 H 1.09003 * 109.47460 * 176.76484 * 11 10 9
41 41 H 1.09008 * 111.00249 * 159.06311 * 12 10 9
42 42 H 1.08996 * 111.00836 * 35.21131 * 12 10 9
43 43 H 1.09001 * 110.36459 * 81.83386 * 13 12 10
44 44 H 1.08998 * 110.37241 * 204.04381 * 13 12 10
45 45 H 0.96996 * 119.99661 * 179.97438 * 18 17 15
46 46 H 1.09007 * 109.85533 * 239.50148 * 23 14 13
47 47 H 1.09000 * 110.00466 * 118.43357 * 23 14 13
48 48 H 1.08001 * 119.75736 * 359.75420 * 25 24 5
49 49 H 1.08005 * 120.05672 * 179.97438 * 26 25 24
50 50 H 1.08002 * 120.02779 * 180.11888 * 27 26 25
51 51 H 1.07998 * 119.78775 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9938 1.3670 0.0000
4 6 1.7540 1.9849 -1.3831
5 6 2.6486 1.2545 -2.3872
6 1 3.6852 1.5551 -2.2344
7 6 2.2245 1.6108 -3.7887
8 8 1.0838 1.9605 -4.0067
9 7 3.1129 1.5410 -4.7999
10 6 2.6736 1.7732 -6.1782
11 6 1.5468 0.8105 -6.5582
12 6 3.8645 1.6399 -7.1636
13 6 4.5105 3.0442 -7.0625
14 7 3.3757 3.9754 -6.9267
15 6 3.3880 5.3029 -7.2624
16 1 2.5010 5.9032 -7.1239
17 6 4.5407 5.8771 -7.7808
18 7 5.6216 5.1454 -7.9500
19 14 4.5573 7.6878 -8.2394
20 1 4.9827 8.4918 -7.0656
21 1 5.5075 7.9061 -9.3596
22 1 3.1948 8.1051 -8.6576
23 6 2.2285 3.2383 -6.3698
24 6 2.5236 -0.2352 -2.1886
25 6 2.9851 -1.0697 -3.1944
26 6 2.8997 -2.4411 -3.0609
27 6 2.3508 -2.9894 -1.9158
28 6 1.8879 -2.1659 -0.9125
29 6 1.9686 -0.7782 -1.0432
30 1 -0.3634 -1.0264 0.0496
31 1 -0.3633 0.5563 0.8641
32 1 -0.3633 0.4703 -0.9138
33 1 1.4786 1.9565 0.7583
34 1 3.0629 1.3484 0.2118
35 1 2.0103 3.0441 -1.3632
36 1 0.7080 1.8633 -1.6648
37 1 4.0429 1.3369 -4.6153
38 1 1.9177 -0.2139 -6.5261
39 1 0.7220 0.9204 -5.8541
40 1 1.1976 1.0391 -7.5652
41 1 3.5133 1.4435 -8.1767
42 1 4.5585 0.8660 -6.8355
43 1 5.1561 3.1026 -6.1862
44 1 5.0778 3.2669 -7.9661
45 1 6.4268 5.5465 -8.3126
46 1 1.3882 3.2828 -7.0628
47 1 1.9403 3.6669 -5.4100
48 1 3.4151 -0.6440 -4.0890
49 1 3.2611 -3.0849 -3.8492
50 1 2.2846 -4.0620 -1.8083
51 1 1.4601 -2.5968 -0.0193
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001046383384.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:24
Heat of formation + Delta-G solvation = 11.531181 kcal
Electronic energy + Delta-G solvation = -31513.162952 eV
Core-core repulsion = 27605.272253 eV
Total energy + Delta-G solvation = -3907.890699 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.27 seconds
Orbital eigenvalues (eV)
-42.18032 -40.81585 -38.91224 -37.91376 -35.76249 -35.02595 -33.52985 -31.70480
-31.27217 -30.84353 -30.38370 -28.28754 -27.57374 -25.81850 -25.29777 -24.17898
-23.43023 -22.34253 -21.78226 -20.53833 -20.37337 -19.03359 -18.40835 -17.67783
-17.30420 -17.06598 -16.78860 -16.69514 -15.85401 -15.60531 -15.54999 -15.37603
-15.10592 -14.80532 -14.76713 -14.41353 -14.15139 -14.04169 -13.88208 -13.57007
-13.35456 -13.33000 -13.18555 -13.08907 -13.00596 -12.83874 -12.79874 -12.78399
-12.30902 -12.12244 -12.05879 -11.99016 -11.90496 -11.72025 -11.64511 -11.53876
-10.78794 -10.76897 -10.28457 -10.03918 -9.66648 -8.91076 -8.89512 -7.80775
-5.24376 0.35582 0.45018 1.43686 1.44997 1.54151 1.60251 2.13188
2.46408 2.72111 2.93365 3.28382 3.48064 3.58216 3.61088 3.68487
3.78311 3.92805 4.00432 4.13426 4.15550 4.23564 4.26015 4.34995
4.45841 4.50713 4.59240 4.60155 4.61879 4.63913 4.70789 4.76343
4.78867 4.82742 4.86178 4.88898 4.97938 4.98636 5.06483 5.09677
5.18185 5.28601 5.37884 5.40267 5.49524 5.58797 5.63602 5.66163
5.78460 5.84563 6.00622 6.28913 6.38887 6.55781 7.08904 7.24075
7.74492 8.38604 9.20407
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.017583 B = 0.002990 C = 0.002758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1592.037661 B = 9362.759871 C =10150.676675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 N -0.504 5.504
3 C 0.061 3.939
4 C -0.141 4.141
5 C -0.060 4.060
6 H 0.112 0.888
7 C 0.527 3.473
8 O -0.568 6.568
9 N -0.701 5.701
10 C 0.172 3.828
11 C -0.140 4.140
12 C -0.127 4.127
13 C 0.155 3.845
14 N -0.623 5.623
15 C -0.243 4.243
16 H 0.068 0.932
17 C -0.060 4.060
18 N -0.943 5.943
19 Si 0.978 3.022
20 H -0.287 1.287
21 H -0.287 1.287
22 H -0.274 1.274
23 C 0.137 3.863
24 C -0.123 4.123
25 C -0.115 4.115
26 C -0.136 4.136
27 C -0.104 4.104
28 C -0.128 4.128
29 C 0.104 3.896
30 H 0.080 0.920
31 H 0.092 0.908
32 H 0.020 0.980
33 H 0.106 0.894
34 H 0.088 0.912
35 H 0.077 0.923
36 H 0.065 0.935
37 H 0.408 0.592
38 H 0.078 0.922
39 H 0.055 0.945
40 H 0.067 0.933
41 H 0.083 0.917
42 H 0.102 0.898
43 H -0.007 1.007
44 H 0.076 0.924
45 H 0.249 0.751
46 H 0.018 0.982
47 H 0.007 0.993
48 H 0.125 0.875
49 H 0.143 0.857
50 H 0.151 0.849
51 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.347 -18.596 15.349 24.698
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 N -0.220 5.220
3 C -0.066 4.066
4 C -0.180 4.180
5 C -0.081 4.081
6 H 0.130 0.870
7 C 0.314 3.686
8 O -0.447 6.447
9 N -0.353 5.353
10 C 0.085 3.915
11 C -0.198 4.198
12 C -0.165 4.165
13 C 0.030 3.970
14 N -0.349 5.349
15 C -0.372 4.372
16 H 0.086 0.914
17 C -0.253 4.253
18 N -0.592 5.592
19 Si 0.806 3.194
20 H -0.214 1.214
21 H -0.213 1.213
22 H -0.199 1.199
23 C 0.011 3.989
24 C -0.127 4.127
25 C -0.134 4.134
26 C -0.154 4.154
27 C -0.122 4.122
28 C -0.148 4.148
29 C 0.008 3.992
30 H 0.099 0.901
31 H 0.111 0.889
32 H 0.038 0.962
33 H 0.124 0.876
34 H 0.106 0.894
35 H 0.095 0.905
36 H 0.084 0.916
37 H 0.245 0.755
38 H 0.097 0.903
39 H 0.074 0.926
40 H 0.086 0.914
41 H 0.101 0.899
42 H 0.120 0.880
43 H 0.011 0.989
44 H 0.094 0.906
45 H 0.059 0.941
46 H 0.036 0.964
47 H 0.025 0.975
48 H 0.143 0.857
49 H 0.160 0.840
50 H 0.169 0.831
51 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -5.924 -18.381 15.564 24.803
hybrid contribution 0.363 1.896 -1.057 2.201
sum -5.561 -16.484 14.507 22.652
Atomic orbital electron populations
1.22540 0.84410 1.03447 1.01364 1.58867 1.08964 1.13245 1.40900
1.22295 1.02064 0.86949 0.95306 1.22068 0.99816 1.00246 0.95877
1.20229 1.02569 0.93732 0.91605 0.87045 1.20672 0.85122 0.75781
0.87020 1.90634 1.21290 1.47868 1.84866 1.46041 1.12338 1.71109
1.05807 1.21125 0.95721 0.93116 0.81514 1.21934 0.97486 0.98669
1.01696 1.23204 0.96202 0.98363 0.98780 1.21753 0.89197 0.86155
0.99855 1.44834 1.09592 1.06375 1.74116 1.19358 0.97496 0.85356
1.35037 0.91358 1.25543 0.95449 1.02390 1.01885 1.70004 1.02289
1.35159 1.51777 0.85089 0.77387 0.79596 0.77303 1.21423 1.21318
1.19942 1.21710 0.90175 0.92046 0.94960 1.19528 1.05080 0.93081
0.94975 1.21302 0.99381 0.94507 0.98181 1.21339 1.00549 0.94429
0.99102 1.21353 0.96889 1.01012 0.92929 1.21244 1.02109 0.91073
1.00358 1.18669 0.98311 0.93466 0.88741 0.90123 0.88918 0.96177
0.87619 0.89392 0.90466 0.91616 0.75532 0.90284 0.92625 0.91396
0.89870 0.88009 0.98930 0.90573 0.94131 0.96362 0.97515 0.85735
0.83952 0.83142 0.84203
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.47 9.22 127.69 1.18 1.65 16
2 N -0.50 -9.70 4.74 -720.65 -3.42 -13.12 16
3 C 0.06 1.12 5.81 86.52 0.50 1.62 16
4 C -0.14 -3.36 5.10 30.73 0.16 -3.20 16
5 C -0.06 -1.52 2.66 -12.24 -0.03 -1.55 16
6 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16
7 C 0.53 16.82 5.46 87.65 0.48 17.30 16
8 O -0.57 -22.34 12.80 -3.05 -0.04 -22.38 16
9 N -0.70 -21.44 3.96 -417.56 -1.65 -23.09 16
10 C 0.17 5.99 0.81 4.79 0.00 5.99 16
11 C -0.14 -4.24 8.43 71.98 0.61 -3.64 16
12 C -0.13 -4.36 6.07 31.98 0.19 -4.17 16
13 C 0.16 7.40 5.86 86.86 0.51 7.91 16
14 N -0.62 -33.21 3.40 -691.32 -2.35 -35.57 16
15 C -0.24 -14.25 10.28 84.04 0.86 -13.39 16
16 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16
17 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16
18 N -0.94 -55.57 10.09 21.65 0.22 -55.35 16
19 Si 0.98 46.46 29.55 68.60 2.03 48.48 16
20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16
21 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16
22 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16
23 C 0.14 6.34 6.18 86.68 0.54 6.87 16
24 C -0.12 -2.90 5.40 -19.71 -0.11 -3.01 16
25 C -0.11 -2.48 9.07 22.31 0.20 -2.28 16
26 C -0.14 -2.40 10.05 22.24 0.22 -2.17 16
27 C -0.10 -1.63 10.04 22.19 0.22 -1.41 16
28 C -0.13 -2.30 9.29 22.50 0.21 -2.09 16
29 C 0.10 2.25 5.12 38.30 0.20 2.44 16
30 H 0.08 1.19 7.70 -2.39 -0.02 1.17 16
31 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16
32 H 0.02 0.42 6.60 -2.38 -0.02 0.41 16
33 H 0.11 1.52 7.98 -2.39 -0.02 1.50 16
34 H 0.09 1.52 8.11 -2.38 -0.02 1.50 16
35 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16
36 H 0.07 1.85 5.75 -2.39 -0.01 1.84 16
37 H 0.41 10.67 8.07 -92.71 -0.75 9.92 16
38 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16
39 H 0.05 1.91 6.16 -2.39 -0.01 1.89 16
40 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16
41 H 0.08 2.80 8.05 -2.38 -0.02 2.78 16
42 H 0.10 2.73 8.07 -2.39 -0.02 2.72 16
43 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16
44 H 0.08 4.15 5.86 -2.39 -0.01 4.14 16
45 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16
46 H 0.02 0.87 7.77 -2.38 -0.02 0.85 16
47 H 0.01 0.35 6.74 -2.39 -0.02 0.33 16
48 H 0.12 2.62 6.04 -2.91 -0.02 2.60 16
49 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16
50 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16
51 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16
Total: -1.00 -72.50 388.12 1.38 -71.12
By element:
Atomic # 1 Polarization: 25.81 SS G_CDS: 0.19 Total: 26.00 kcal
Atomic # 6 Polarization: -2.50 SS G_CDS: 6.41 Total: 3.91 kcal
Atomic # 7 Polarization: -119.92 SS G_CDS: -7.21 Total: -127.13 kcal
Atomic # 8 Polarization: -22.34 SS G_CDS: -0.04 Total: -22.38 kcal
Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal
Total: -72.50 1.38 -71.12 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046383384.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.647 kcal
(2) G-P(sol) polarization free energy of solvation -72.496 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.151 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.116 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.531 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.27 seconds