Wall clock time and date at job start Sat Apr 11 2020 07:00:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 C 1.36552 * 125.07482 * 2 1
4 4 C 1.34542 * 109.90188 * 180.02562 * 3 2 1
5 5 C 1.45996 * 107.00991 * 0.02562 * 4 3 2
6 6 C 1.37804 * 125.07697 * 180.02562 * 2 1 3
7 7 C 1.38983 * 133.36976 * 359.93961 * 6 2 1
8 8 C 1.38056 * 120.26767 * 180.02562 * 7 6 2
9 9 C 1.38276 * 120.88061 * 359.72659 * 8 7 6
10 10 C 1.39317 * 120.20115 * 0.55455 * 9 8 7
11 11 C 1.47381 * 120.34107 * 179.71812 * 10 9 8
12 12 O 1.21613 * 119.99816 * 179.72579 * 11 10 9
13 13 N 1.34777 * 120.00222 * 359.73080 * 11 10 9
14 14 C 1.46498 * 119.99828 * 180.27565 * 13 11 10
15 15 H 1.09004 * 109.47372 * 34.71852 * 14 13 11
16 16 C 1.52999 * 109.46963 * 154.72290 * 14 13 11
17 17 N 1.46500 * 109.47226 * 304.99288 * 16 14 13
18 18 C 1.36937 * 119.99856 * 179.97438 * 17 16 14
19 19 H 1.07995 * 120.00314 * 0.02562 * 18 17 16
20 20 C 1.38818 * 119.99459 * 180.02562 * 18 17 16
21 21 N 1.31621 * 119.99470 * 180.02562 * 20 18 17
22 22 Si 1.86795 * 120.00331 * 359.97438 * 20 18 17
23 23 H 1.48510 * 109.46867 * 90.00273 * 22 20 18
24 24 H 1.48496 * 109.47349 * 209.99962 * 22 20 18
25 25 H 1.48495 * 109.47212 * 330.00740 * 22 20 18
26 26 C 1.52997 * 109.47036 * 274.72131 * 14 13 11
27 27 C 1.53003 * 109.47435 * 60.00123 * 26 14 13
28 28 C 1.53003 * 109.47241 * 180.02562 * 26 14 13
29 29 C 1.53004 * 109.47278 * 300.00073 * 26 14 13
30 30 H 1.08997 * 109.47188 * 89.97728 * 1 2 3
31 31 H 1.09007 * 109.46792 * 209.97921 * 1 2 3
32 32 H 1.09000 * 109.47594 * 329.97123 * 1 2 3
33 33 H 1.08004 * 125.04661 * 0.05303 * 3 2 1
34 34 H 1.08000 * 126.50204 * 179.97438 * 4 3 2
35 35 H 1.07995 * 119.86623 * 0.02562 * 7 6 2
36 36 H 1.07995 * 119.55931 * 180.02562 * 8 7 6
37 37 H 1.08003 * 119.90067 * 180.27929 * 9 8 7
38 38 H 0.97001 * 119.99727 * 359.97438 * 13 11 10
39 39 H 1.08995 * 109.47415 * 64.99597 * 16 14 13
40 40 H 1.09008 * 109.47087 * 184.99936 * 16 14 13
41 41 H 0.96998 * 120.00120 * 0.02562 * 17 16 14
42 42 H 0.97006 * 119.99889 * 180.02562 * 21 20 18
43 43 H 1.09001 * 109.46678 * 59.99591 * 27 26 14
44 44 H 1.08997 * 109.47244 * 180.02562 * 27 26 14
45 45 H 1.09007 * 109.46677 * 300.00047 * 27 26 14
46 46 H 1.08997 * 109.47066 * 59.99753 * 28 26 14
47 47 H 1.09000 * 109.47191 * 180.02562 * 28 26 14
48 48 H 1.08995 * 109.46928 * 299.99922 * 28 26 14
49 49 H 1.09003 * 109.46809 * 60.00014 * 29 26 14
50 50 H 1.09000 * 109.47238 * 179.97438 * 29 26 14
51 51 H 1.08997 * 109.47037 * 300.00252 * 29 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.2496 1.1175 0.0000
4 6 3.5481 0.7654 -0.0006
5 6 3.5949 -0.6938 -0.0016
6 6 2.2569 -1.1278 -0.0005
7 6 1.9785 -2.4894 0.0000
8 6 3.0073 -3.4100 -0.0003
9 6 4.3275 -2.9988 -0.0066
10 6 4.6387 -1.6409 -0.0012
11 6 6.0448 -1.1992 -0.0017
12 8 6.3093 -0.0122 -0.0020
13 7 7.0375 -2.1108 -0.0018
14 6 8.4351 -1.6718 0.0038
15 1 8.5269 -0.7590 0.5925
16 6 9.3107 -2.7654 0.6187
17 7 8.8011 -3.1090 1.9485
18 6 9.4284 -4.0708 2.6946
19 1 10.2990 -4.5757 2.3030
20 6 8.9451 -4.3967 3.9545
21 7 9.5484 -5.3207 4.6719
22 14 7.4397 -3.5228 4.6323
23 1 6.2166 -4.2697 4.2427
24 1 7.5296 -3.4583 6.1131
25 1 7.3759 -2.1460 4.0797
26 6 8.8903 -1.4008 -1.4315
27 6 8.0147 -0.3071 -2.0464
28 6 10.3502 -0.9428 -1.4257
29 6 8.7615 -2.6820 -2.2579
30 1 -0.3633 0.0004 -1.0276
31 1 -0.3633 -0.8902 0.5136
32 1 -0.3634 0.8897 0.5143
33 1 1.8824 2.1332 0.0008
34 1 4.3954 1.4351 -0.0011
35 1 0.9533 -2.8288 0.0005
36 1 2.7780 -4.4653 -0.0003
37 1 5.1200 -3.7327 -0.0112
38 1 6.8265 -3.0576 -0.0013
39 1 9.2887 -3.6495 -0.0184
40 1 10.3358 -2.4048 0.7045
41 1 8.0190 -2.6558 2.3002
42 1 9.2105 -5.5488 5.5521
43 1 8.1064 0.6056 -1.4576
44 1 8.3387 -0.1144 -3.0691
45 1 6.9747 -0.6338 -2.0506
46 1 10.9737 -1.7222 -0.9878
47 1 10.6743 -0.7493 -2.4482
48 1 10.4423 -0.0302 -0.8369
49 1 7.7216 -3.0086 -2.2621
50 1 9.0854 -2.4888 -3.2806
51 1 9.3853 -3.4611 -1.8199
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001332874098.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:22
Heat of formation + Delta-G solvation = 40.788773 kcal
Electronic energy + Delta-G solvation = -31101.047791 eV
Core-core repulsion = 27194.425797 eV
Total energy + Delta-G solvation = -3906.621994 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.46873 -39.98593 -37.63370 -36.66825 -34.54199 -33.28974 -32.94540 -31.36430
-30.49246 -29.09503 -28.02405 -27.10607 -26.72434 -26.34280 -24.10238 -23.16858
-21.69953 -21.45268 -21.03156 -19.80557 -18.61925 -17.83839 -17.09214 -16.85407
-16.14133 -15.71662 -15.65102 -15.43826 -15.22154 -14.54069 -14.17425 -13.95506
-13.94091 -13.74942 -13.49394 -13.22124 -13.06646 -12.87751 -12.84740 -12.71420
-12.50340 -12.21247 -11.98327 -11.81253 -11.73168 -11.51294 -11.44108 -11.39429
-11.34875 -11.12887 -10.82945 -10.67865 -10.49112 -10.25783 -9.95252 -9.66970
-9.58742 -9.49665 -8.88319 -8.61258 -8.30902 -7.71025 -7.22212 -5.76400
-3.11771 0.66448 1.47901 2.61995 2.64020 3.09052 3.39215 3.46100
3.47231 3.49134 4.02365 4.45259 4.54928 4.61009 4.69455 4.81311
4.84902 4.88981 4.97567 5.02983 5.08380 5.15357 5.20307 5.36460
5.48554 5.50178 5.53325 5.65488 5.70815 5.78388 5.84661 5.85812
5.92740 5.93258 6.05087 6.07238 6.14362 6.18344 6.31027 6.32244
6.36326 6.43220 6.45520 6.50827 6.59869 6.63605 6.68681 6.74508
6.94599 7.06720 7.14798 7.85937 7.99747 8.42483 8.55044 9.21970
9.94558 10.14255 11.41832
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.009208 B = 0.004154 C = 0.003219
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3040.198742 B = 6738.721254 C = 8695.916850
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.081 3.919
2 N -0.491 5.491
3 C 0.042 3.958
4 C -0.180 4.180
5 C -0.058 4.058
6 C 0.084 3.916
7 C -0.107 4.107
8 C -0.107 4.107
9 C -0.107 4.107
10 C -0.086 4.086
11 C 0.558 3.442
12 O -0.533 6.533
13 N -0.709 5.709
14 C 0.146 3.854
15 H 0.088 0.912
16 C 0.146 3.854
17 N -0.755 5.755
18 C -0.244 4.244
19 H 0.091 0.909
20 C 0.008 3.992
21 N -0.933 5.933
22 Si 0.878 3.122
23 H -0.283 1.283
24 H -0.291 1.291
25 H -0.277 1.277
26 C -0.075 4.075
27 C -0.129 4.129
28 C -0.141 4.141
29 C -0.142 4.142
30 H 0.067 0.933
31 H 0.079 0.921
32 H 0.081 0.919
33 H 0.168 0.832
34 H 0.158 0.842
35 H 0.120 0.880
36 H 0.132 0.868
37 H 0.130 0.870
38 H 0.402 0.598
39 H 0.037 0.963
40 H 0.044 0.956
41 H 0.363 0.637
42 H 0.259 0.741
43 H 0.061 0.939
44 H 0.040 0.960
45 H 0.053 0.947
46 H 0.063 0.937
47 H 0.052 0.948
48 H 0.055 0.945
49 H 0.052 0.948
50 H 0.049 0.951
51 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.887 9.796 -15.427 24.882
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 N -0.176 5.176
3 C -0.083 4.083
4 C -0.205 4.205
5 C -0.063 4.063
6 C -0.021 4.021
7 C -0.128 4.128
8 C -0.126 4.126
9 C -0.127 4.127
10 C -0.089 4.089
11 C 0.346 3.654
12 O -0.411 6.411
13 N -0.361 5.361
14 C 0.041 3.959
15 H 0.106 0.894
16 C 0.018 3.982
17 N -0.401 5.401
18 C -0.374 4.374
19 H 0.109 0.891
20 C -0.188 4.188
21 N -0.581 5.581
22 Si 0.709 3.291
23 H -0.210 1.210
24 H -0.217 1.217
25 H -0.203 1.203
26 C -0.076 4.076
27 C -0.186 4.186
28 C -0.199 4.199
29 C -0.200 4.200
30 H 0.086 0.914
31 H 0.097 0.903
32 H 0.100 0.900
33 H 0.186 0.814
34 H 0.175 0.825
35 H 0.138 0.862
36 H 0.150 0.850
37 H 0.148 0.852
38 H 0.238 0.762
39 H 0.055 0.945
40 H 0.061 0.939
41 H 0.196 0.804
42 H 0.069 0.931
43 H 0.080 0.920
44 H 0.060 0.940
45 H 0.072 0.928
46 H 0.082 0.918
47 H 0.071 0.929
48 H 0.074 0.926
49 H 0.071 0.929
50 H 0.068 0.932
51 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -16.863 10.507 -15.346 25.105
hybrid contribution -1.329 0.036 0.738 1.520
sum -18.192 10.543 -14.608 25.602
Atomic orbital electron populations
1.21897 0.77315 1.04094 1.02775 1.43723 1.05712 1.04272 1.63893
1.21921 0.90547 0.90999 1.04785 1.21927 0.95871 0.93069 1.09644
1.18951 0.90712 0.93609 1.03068 1.18168 0.90010 0.88370 1.05543
1.20109 0.99567 0.89119 1.04005 1.20718 0.91765 0.99246 1.00886
1.21212 0.97130 0.94335 1.00049 1.19435 0.92332 0.92730 1.04435
1.18026 0.84812 0.86064 0.76534 1.90723 1.84360 1.16362 1.49662
1.45943 1.05974 1.09891 1.74246 1.21337 0.79936 0.99337 0.95272
0.89440 1.21090 0.95625 0.94524 0.86942 1.42730 1.34838 1.46904
1.15651 1.19042 1.09795 1.11423 0.97093 0.89135 1.24631 0.98739
0.98613 0.96825 1.69701 1.41970 1.34099 1.12346 0.86634 0.84116
0.79867 0.78520 1.20960 1.21725 1.20276 1.20879 0.95856 0.96008
0.94901 1.21879 0.99265 0.98421 0.99061 1.21894 0.94963 1.01612
1.01437 1.21923 1.01815 0.97144 0.99079 0.91446 0.90261 0.89978
0.81442 0.82480 0.86224 0.85049 0.85221 0.76233 0.94517 0.93868
0.80426 0.93077 0.92020 0.94045 0.92829 0.91798 0.92855 0.92584
0.92866 0.93151 0.91808
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.48 11.02 59.84 0.66 1.14 16
2 N -0.49 -5.14 3.17 -121.81 -0.39 -5.53 16
3 C 0.04 0.44 11.29 -16.76 -0.19 0.26 16
4 C -0.18 -2.51 10.24 -37.78 -0.39 -2.89 16
5 C -0.06 -0.88 6.15 -104.85 -0.64 -1.52 16
6 C 0.08 1.09 6.80 -83.99 -0.57 0.52 16
7 C -0.11 -1.20 9.93 -39.37 -0.39 -1.59 16
8 C -0.11 -1.23 9.99 -39.63 -0.40 -1.62 16
9 C -0.11 -1.44 9.53 -39.17 -0.37 -1.81 16
10 C -0.09 -1.33 5.89 -104.75 -0.62 -1.95 16
11 C 0.56 9.40 6.13 -12.54 -0.08 9.32 16
12 O -0.53 -9.91 12.22 5.27 0.06 -9.85 16
13 N -0.71 -11.28 3.59 -54.90 -0.20 -11.48 16
14 C 0.15 2.39 1.69 -67.93 -0.11 2.27 16
15 H 0.09 1.62 7.57 -51.93 -0.39 1.23 16
16 C 0.15 2.73 5.10 -4.04 -0.02 2.70 16
17 N -0.76 -17.78 5.24 -59.91 -0.31 -18.09 16
18 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16
19 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16
20 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16
21 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16
22 Si 0.88 22.70 27.73 -169.99 -4.71 17.98 16
23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16
24 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16
25 H -0.28 -7.02 6.52 56.52 0.37 -6.66 16
26 C -0.07 -1.02 0.62 -154.50 -0.10 -1.12 16
27 C -0.13 -1.81 7.00 37.16 0.26 -1.55 16
28 C -0.14 -1.78 8.12 37.16 0.30 -1.48 16
29 C -0.14 -1.77 7.97 37.16 0.30 -1.47 16
30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
31 H 0.08 0.41 8.09 -51.92 -0.42 -0.01 16
32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16
33 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16
34 H 0.16 2.28 7.16 -52.49 -0.38 1.90 16
35 H 0.12 0.99 8.05 -52.49 -0.42 0.56 16
36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16
37 H 0.13 1.57 6.40 -52.48 -0.34 1.24 16
38 H 0.40 6.02 6.64 -40.82 -0.27 5.75 16
39 H 0.04 0.67 6.17 -51.93 -0.32 0.35 16
40 H 0.04 0.82 6.71 -51.92 -0.35 0.48 16
41 H 0.36 8.67 5.20 -40.82 -0.21 8.46 16
42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16
43 H 0.06 0.94 7.53 -51.93 -0.39 0.55 16
44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16
45 H 0.05 0.82 5.79 -51.92 -0.30 0.51 16
46 H 0.06 0.82 6.54 -51.93 -0.34 0.48 16
47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
49 H 0.05 0.66 7.60 -51.93 -0.39 0.26 16
50 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
51 H 0.06 0.81 6.32 -51.93 -0.33 0.48 16
LS Contribution 397.22 15.07 5.99 5.99
Total: -1.00 -34.66 397.22 -9.23 -43.89
By element:
Atomic # 1 Polarization: 21.12 SS G_CDS: -7.83 Total: 13.29 kcal
Atomic # 6 Polarization: -5.04 SS G_CDS: -2.61 Total: -7.66 kcal
Atomic # 7 Polarization: -63.53 SS G_CDS: -0.12 Total: -63.65 kcal
Atomic # 8 Polarization: -9.91 SS G_CDS: 0.06 Total: -9.85 kcal
Atomic # 14 Polarization: 22.70 SS G_CDS: -4.71 Total: 17.98 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -34.66 -9.23 -43.89 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332874098.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.679 kcal
(2) G-P(sol) polarization free energy of solvation -34.663 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.016 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.789 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds