Wall clock time and date at job start Sat Apr 11 2020 07:00:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 C 1.36552 * 125.07482 * 2 1
4 4 C 1.34542 * 109.90188 * 180.02562 * 3 2 1
5 5 C 1.45996 * 107.00991 * 0.02562 * 4 3 2
6 6 C 1.37804 * 125.07697 * 180.02562 * 2 1 3
7 7 C 1.38983 * 133.36976 * 359.93961 * 6 2 1
8 8 C 1.38056 * 120.26767 * 180.02562 * 7 6 2
9 9 C 1.38276 * 120.88061 * 359.72659 * 8 7 6
10 10 C 1.39317 * 120.20115 * 0.55455 * 9 8 7
11 11 C 1.47381 * 120.34107 * 179.71812 * 10 9 8
12 12 O 1.21613 * 119.99816 * 179.72579 * 11 10 9
13 13 N 1.34777 * 120.00222 * 359.73080 * 11 10 9
14 14 C 1.46498 * 119.99828 * 180.27565 * 13 11 10
15 15 H 1.09004 * 109.47372 * 34.71852 * 14 13 11
16 16 C 1.52999 * 109.46963 * 154.72290 * 14 13 11
17 17 N 1.46500 * 109.47226 * 304.99288 * 16 14 13
18 18 C 1.36937 * 119.99856 * 179.97438 * 17 16 14
19 19 H 1.07995 * 120.00314 * 0.02562 * 18 17 16
20 20 C 1.38818 * 119.99459 * 180.02562 * 18 17 16
21 21 N 1.31621 * 119.99470 * 180.02562 * 20 18 17
22 22 Si 1.86795 * 120.00331 * 359.97438 * 20 18 17
23 23 H 1.48510 * 109.46867 * 90.00273 * 22 20 18
24 24 H 1.48496 * 109.47349 * 209.99962 * 22 20 18
25 25 H 1.48495 * 109.47212 * 330.00740 * 22 20 18
26 26 C 1.52997 * 109.47036 * 274.72131 * 14 13 11
27 27 C 1.53003 * 109.47435 * 60.00123 * 26 14 13
28 28 C 1.53003 * 109.47241 * 180.02562 * 26 14 13
29 29 C 1.53004 * 109.47278 * 300.00073 * 26 14 13
30 30 H 1.08997 * 109.47188 * 89.97728 * 1 2 3
31 31 H 1.09007 * 109.46792 * 209.97921 * 1 2 3
32 32 H 1.09000 * 109.47594 * 329.97123 * 1 2 3
33 33 H 1.08004 * 125.04661 * 0.05303 * 3 2 1
34 34 H 1.08000 * 126.50204 * 179.97438 * 4 3 2
35 35 H 1.07995 * 119.86623 * 0.02562 * 7 6 2
36 36 H 1.07995 * 119.55931 * 180.02562 * 8 7 6
37 37 H 1.08003 * 119.90067 * 180.27929 * 9 8 7
38 38 H 0.97001 * 119.99727 * 359.97438 * 13 11 10
39 39 H 1.08995 * 109.47415 * 64.99597 * 16 14 13
40 40 H 1.09008 * 109.47087 * 184.99936 * 16 14 13
41 41 H 0.96998 * 120.00120 * 0.02562 * 17 16 14
42 42 H 0.97006 * 119.99889 * 180.02562 * 21 20 18
43 43 H 1.09001 * 109.46678 * 59.99591 * 27 26 14
44 44 H 1.08997 * 109.47244 * 180.02562 * 27 26 14
45 45 H 1.09007 * 109.46677 * 300.00047 * 27 26 14
46 46 H 1.08997 * 109.47066 * 59.99753 * 28 26 14
47 47 H 1.09000 * 109.47191 * 180.02562 * 28 26 14
48 48 H 1.08995 * 109.46928 * 299.99922 * 28 26 14
49 49 H 1.09003 * 109.46809 * 60.00014 * 29 26 14
50 50 H 1.09000 * 109.47238 * 179.97438 * 29 26 14
51 51 H 1.08997 * 109.47037 * 300.00252 * 29 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.2496 1.1175 0.0000
4 6 3.5481 0.7654 -0.0006
5 6 3.5949 -0.6938 -0.0016
6 6 2.2569 -1.1278 -0.0005
7 6 1.9785 -2.4894 0.0000
8 6 3.0073 -3.4100 -0.0003
9 6 4.3275 -2.9988 -0.0066
10 6 4.6387 -1.6409 -0.0012
11 6 6.0448 -1.1992 -0.0017
12 8 6.3093 -0.0122 -0.0020
13 7 7.0375 -2.1108 -0.0018
14 6 8.4351 -1.6718 0.0038
15 1 8.5269 -0.7590 0.5925
16 6 9.3107 -2.7654 0.6187
17 7 8.8011 -3.1090 1.9485
18 6 9.4284 -4.0708 2.6946
19 1 10.2990 -4.5757 2.3030
20 6 8.9451 -4.3967 3.9545
21 7 9.5484 -5.3207 4.6719
22 14 7.4397 -3.5228 4.6323
23 1 6.2166 -4.2697 4.2427
24 1 7.5296 -3.4583 6.1131
25 1 7.3759 -2.1460 4.0797
26 6 8.8903 -1.4008 -1.4315
27 6 8.0147 -0.3071 -2.0464
28 6 10.3502 -0.9428 -1.4257
29 6 8.7615 -2.6820 -2.2579
30 1 -0.3633 0.0004 -1.0276
31 1 -0.3633 -0.8902 0.5136
32 1 -0.3634 0.8897 0.5143
33 1 1.8824 2.1332 0.0008
34 1 4.3954 1.4351 -0.0011
35 1 0.9533 -2.8288 0.0005
36 1 2.7780 -4.4653 -0.0003
37 1 5.1200 -3.7327 -0.0112
38 1 6.8265 -3.0576 -0.0013
39 1 9.2887 -3.6495 -0.0184
40 1 10.3358 -2.4048 0.7045
41 1 8.0190 -2.6558 2.3002
42 1 9.2105 -5.5488 5.5521
43 1 8.1064 0.6056 -1.4576
44 1 8.3387 -0.1144 -3.0691
45 1 6.9747 -0.6338 -2.0506
46 1 10.9737 -1.7222 -0.9878
47 1 10.6743 -0.7493 -2.4482
48 1 10.4423 -0.0302 -0.8369
49 1 7.7216 -3.0086 -2.2621
50 1 9.0854 -2.4888 -3.2806
51 1 9.3853 -3.4611 -1.8199
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001332874098.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:21
Heat of formation + Delta-G solvation = 19.876533 kcal
Electronic energy + Delta-G solvation = -31101.954614 eV
Core-core repulsion = 27194.425797 eV
Total energy + Delta-G solvation = -3907.528817 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.36963 -41.21944 -38.81391 -37.69821 -36.33640 -34.66096 -33.75781 -33.35754
-31.52238 -30.00977 -29.57585 -28.14742 -27.84076 -27.05289 -25.66866 -24.48540
-23.08996 -22.53904 -22.17858 -20.89647 -20.10864 -19.43989 -18.25338 -17.83589
-17.11511 -17.06404 -16.89350 -16.39741 -16.16329 -16.15366 -15.78281 -15.11515
-15.04007 -14.90028 -14.76122 -14.61921 -14.46762 -14.06101 -13.75053 -13.67428
-13.63723 -13.33393 -13.16610 -13.11516 -12.99357 -12.79980 -12.65517 -12.52571
-12.40761 -12.37293 -12.22296 -12.17994 -11.99998 -11.84198 -11.62247 -11.30840
-11.00753 -10.73503 -10.61899 -9.91800 -9.30048 -9.21754 -8.60630 -8.04405
-5.36316 -0.32138 0.55301 1.33008 1.35808 1.41356 1.69442 1.89008
1.98408 2.23615 2.43959 2.97487 3.27813 3.46681 3.64251 3.80288
3.88624 3.92649 3.95601 4.02516 4.05080 4.16420 4.23838 4.31386
4.43300 4.47090 4.52292 4.62003 4.65308 4.73196 4.80866 4.82593
4.85024 4.89108 4.94446 4.97472 5.06016 5.09039 5.10748 5.13835
5.24888 5.31614 5.38817 5.43635 5.44773 5.55256 5.64141 5.70810
5.72997 5.76495 6.17094 6.19819 6.39531 6.60420 7.05554 7.29314
7.81808 7.99834 9.17083
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.009208 B = 0.004154 C = 0.003219
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3040.198742 B = 6738.721254 C = 8695.916850
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.487 5.487
3 C 0.070 3.930
4 C -0.231 4.231
5 C -0.087 4.087
6 C 0.067 3.933
7 C -0.093 4.093
8 C -0.116 4.116
9 C -0.110 4.110
10 C -0.123 4.123
11 C 0.555 3.445
12 O -0.561 6.561
13 N -0.707 5.707
14 C 0.156 3.844
15 H 0.061 0.939
16 C 0.147 3.853
17 N -0.758 5.758
18 C -0.226 4.226
19 H 0.067 0.933
20 C -0.052 4.052
21 N -0.978 5.978
22 Si 0.941 3.059
23 H -0.271 1.271
24 H -0.295 1.295
25 H -0.274 1.274
26 C -0.069 4.069
27 C -0.118 4.118
28 C -0.140 4.140
29 C -0.138 4.138
30 H 0.083 0.917
31 H 0.090 0.910
32 H 0.104 0.896
33 H 0.208 0.792
34 H 0.136 0.864
35 H 0.156 0.844
36 H 0.161 0.839
37 H 0.135 0.865
38 H 0.406 0.594
39 H 0.051 0.949
40 H 0.045 0.955
41 H 0.362 0.638
42 H 0.258 0.742
43 H 0.041 0.959
44 H 0.061 0.939
45 H 0.037 0.963
46 H 0.061 0.939
47 H 0.074 0.926
48 H 0.049 0.951
49 H 0.051 0.949
50 H 0.069 0.931
51 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.002 10.075 -16.904 28.060
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 N -0.170 5.170
3 C -0.056 4.056
4 C -0.256 4.256
5 C -0.093 4.093
6 C -0.039 4.039
7 C -0.113 4.113
8 C -0.135 4.135
9 C -0.130 4.130
10 C -0.126 4.126
11 C 0.345 3.655
12 O -0.441 6.441
13 N -0.358 5.358
14 C 0.051 3.949
15 H 0.080 0.920
16 C 0.020 3.980
17 N -0.403 5.403
18 C -0.357 4.357
19 H 0.085 0.915
20 C -0.244 4.244
21 N -0.629 5.629
22 Si 0.769 3.231
23 H -0.197 1.197
24 H -0.222 1.222
25 H -0.200 1.200
26 C -0.071 4.071
27 C -0.175 4.175
28 C -0.197 4.197
29 C -0.195 4.195
30 H 0.101 0.899
31 H 0.109 0.891
32 H 0.123 0.877
33 H 0.225 0.775
34 H 0.154 0.846
35 H 0.173 0.827
36 H 0.179 0.821
37 H 0.153 0.847
38 H 0.243 0.757
39 H 0.069 0.931
40 H 0.063 0.937
41 H 0.194 0.806
42 H 0.067 0.933
43 H 0.061 0.939
44 H 0.080 0.920
45 H 0.057 0.943
46 H 0.080 0.920
47 H 0.093 0.907
48 H 0.068 0.932
49 H 0.070 0.930
50 H 0.088 0.912
51 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -20.006 10.787 -16.870 28.306
hybrid contribution -0.402 0.000 1.113 1.183
sum -20.408 10.787 -15.757 27.949
Atomic orbital electron populations
1.22271 0.74249 1.05887 1.04379 1.44073 1.07441 1.03311 1.62192
1.22424 0.89498 0.92647 1.01036 1.21882 0.97043 0.92845 1.13813
1.19309 0.92030 0.94242 1.03744 1.18436 0.89546 0.89751 1.06162
1.20537 1.01236 0.88242 1.01319 1.21083 0.90900 1.00917 1.00553
1.21416 0.98552 0.93541 0.99474 1.19454 0.91462 0.93987 1.07722
1.18366 0.85666 0.85723 0.75788 1.90697 1.84873 1.17451 1.51076
1.45887 1.05624 1.10040 1.74266 1.21161 0.80079 0.97083 0.96627
0.92036 1.21240 0.95975 0.95773 0.84963 1.42757 1.34593 1.45944
1.17024 1.19054 1.08537 1.11027 0.97101 0.91492 1.25273 1.01789
0.99844 0.97482 1.69845 1.43982 1.36230 1.12850 0.85632 0.81224
0.78877 0.77330 1.19718 1.22197 1.20015 1.20839 0.96384 0.96761
0.93071 1.21747 0.98465 0.97520 0.99812 1.21890 0.93968 1.01178
1.02714 1.21885 1.01822 0.96027 0.99803 0.89861 0.89102 0.87713
0.77546 0.84645 0.82666 0.82132 0.84722 0.75742 0.93105 0.93712
0.80554 0.93314 0.93939 0.92034 0.94346 0.92024 0.90694 0.93228
0.92978 0.91240 0.92005
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.55 11.02 127.77 1.41 1.96 16
2 N -0.49 -8.87 3.17 -539.30 -1.71 -10.58 16
3 C 0.07 1.38 11.29 83.11 0.94 2.32 16
4 C -0.23 -6.62 10.24 23.43 0.24 -6.38 16
5 C -0.09 -2.69 6.15 -20.01 -0.12 -2.81 16
6 C 0.07 1.61 6.80 38.98 0.27 1.88 16
7 C -0.09 -1.81 9.93 22.41 0.22 -1.58 16
8 C -0.12 -2.39 9.99 22.24 0.22 -2.17 16
9 C -0.11 -2.90 9.53 22.54 0.21 -2.68 16
10 C -0.12 -3.91 5.89 -19.95 -0.12 -4.03 16
11 C 0.56 19.55 6.13 86.65 0.53 20.08 16
12 O -0.56 -22.23 12.22 -4.07 -0.05 -22.28 16
13 N -0.71 -22.99 3.59 -445.85 -1.60 -24.59 16
14 C 0.16 5.17 1.69 44.99 0.08 5.25 16
15 H 0.06 2.38 7.57 -2.39 -0.02 2.36 16
16 C 0.15 5.49 5.10 86.38 0.44 5.93 16
17 N -0.76 -35.84 5.24 -343.45 -1.80 -37.64 16
18 C -0.23 -12.84 10.47 84.03 0.88 -11.96 16
19 H 0.07 4.08 8.06 -2.91 -0.02 4.05 16
20 C -0.05 -3.08 5.50 84.86 0.47 -2.61 16
21 N -0.98 -62.63 13.97 21.65 0.30 -62.33 16
22 Si 0.94 47.54 27.73 68.60 1.90 49.44 16
23 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16
24 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16
25 H -0.27 -13.58 6.52 99.48 0.65 -12.93 16
26 C -0.07 -1.85 0.62 -52.18 -0.03 -1.88 16
27 C -0.12 -3.32 7.00 71.98 0.50 -2.82 16
28 C -0.14 -3.39 8.12 71.98 0.58 -2.81 16
29 C -0.14 -3.23 7.97 71.98 0.57 -2.66 16
30 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16
31 H 0.09 0.53 8.09 -2.38 -0.02 0.51 16
32 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16
33 H 0.21 2.19 8.06 -2.91 -0.02 2.16 16
34 H 0.14 4.32 7.16 -2.91 -0.02 4.30 16
35 H 0.16 1.83 8.05 -2.91 -0.02 1.81 16
36 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16
37 H 0.14 3.22 6.40 -2.91 -0.02 3.20 16
38 H 0.41 12.29 6.64 -92.71 -0.62 11.67 16
39 H 0.05 1.81 6.17 -2.39 -0.01 1.80 16
40 H 0.05 1.70 6.71 -2.38 -0.02 1.69 16
41 H 0.36 17.33 5.20 -92.71 -0.48 16.85 16
42 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16
43 H 0.04 1.34 7.53 -2.39 -0.02 1.33 16
44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
45 H 0.04 1.19 5.79 -2.38 -0.01 1.18 16
46 H 0.06 1.52 6.54 -2.39 -0.02 1.50 16
47 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16
48 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16
49 H 0.05 1.23 7.60 -2.39 -0.02 1.21 16
50 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
51 H 0.06 1.47 6.32 -2.39 -0.02 1.46 16
Total: -1.00 -78.15 397.22 4.14 -74.01
By element:
Atomic # 1 Polarization: 41.17 SS G_CDS: -0.20 Total: 40.97 kcal
Atomic # 6 Polarization: -14.29 SS G_CDS: 7.29 Total: -6.99 kcal
Atomic # 7 Polarization: -130.34 SS G_CDS: -4.81 Total: -135.14 kcal
Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.28 kcal
Atomic # 14 Polarization: 47.54 SS G_CDS: 1.90 Total: 49.44 kcal
Total: -78.15 4.14 -74.01 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332874098.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.886 kcal
(2) G-P(sol) polarization free energy of solvation -78.146 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.740 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.010 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.877 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds