Wall clock time and date at job start Sat Apr 11 2020 07:01:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.53001 * 109.46801 * 2 1
4 4 C 1.53002 * 109.46781 * 119.99655 * 2 1 3
5 5 H 1.08997 * 109.47090 * 184.99950 * 4 2 1
6 6 F 1.39898 * 109.47336 * 305.00400 * 4 2 1
7 7 C 1.50704 * 109.46802 * 64.99963 * 4 2 1
8 8 O 1.21275 * 120.00263 * 315.00322 * 7 4 2
9 9 N 1.34784 * 119.99481 * 134.99566 * 7 4 2
10 10 C 1.47027 * 125.64406 * 179.97438 * 9 7 4
11 11 C 1.54321 * 107.26617 * 178.90815 * 10 9 7
12 12 H 1.09005 * 110.72064 * 96.35188 * 11 10 9
13 13 C 1.53006 * 110.71843 * 219.44610 * 11 10 9
14 14 N 1.46901 * 109.47014 * 293.54624 * 13 11 10
15 15 C 1.46902 * 110.99983 * 179.97438 * 14 13 11
16 16 C 1.50696 * 109.46978 * 180.02562 * 15 14 13
17 17 O 1.21295 * 120.00238 * 359.97438 * 16 15 14
18 18 N 1.34777 * 120.00076 * 180.02562 * 16 15 14
19 19 C 1.37105 * 120.00244 * 180.02562 * 18 16 15
20 20 H 1.07998 * 119.99708 * 359.97438 * 19 18 16
21 21 C 1.38945 * 120.00017 * 179.97438 * 19 18 16
22 22 N 1.31413 * 119.99901 * 359.71836 * 21 19 18
23 23 Si 1.86800 * 120.00194 * 179.97438 * 21 19 18
24 24 H 1.48501 * 109.46758 * 269.72227 * 23 21 19
25 25 H 1.48499 * 109.47026 * 29.72075 * 23 21 19
26 26 H 1.48496 * 109.47474 * 149.72111 * 23 21 19
27 27 C 1.55151 * 102.94663 * 337.80988 * 11 10 9
28 28 H 1.09005 * 111.00606 * 277.42945 * 27 11 10
29 29 C 1.53003 * 111.00683 * 153.57675 * 27 11 10
30 30 C 1.47421 * 125.64984 * 359.96412 * 9 7 4
31 31 H 1.08997 * 109.47166 * 300.00462 * 1 2 3
32 32 H 1.09006 * 109.46597 * 59.99996 * 1 2 3
33 33 H 1.08995 * 109.46857 * 179.97438 * 1 2 3
34 34 H 1.08997 * 109.47166 * 239.99538 * 2 1 3
35 35 H 1.09004 * 109.46461 * 179.97438 * 3 2 1
36 36 H 1.08994 * 109.47220 * 299.99584 * 3 2 1
37 37 H 1.09001 * 109.47014 * 60.00207 * 3 2 1
38 38 H 1.09002 * 109.87786 * 59.49172 * 10 9 7
39 39 H 1.08992 * 109.88437 * 298.32885 * 10 9 7
40 40 H 1.09002 * 109.47001 * 173.54915 * 13 11 10
41 41 H 1.08992 * 109.47083 * 53.54606 * 13 11 10
42 42 H 1.00903 * 110.99970 * 303.95843 * 14 13 11
43 43 H 1.08999 * 109.46697 * 60.00741 * 15 14 13
44 44 H 1.08993 * 109.47253 * 300.00391 * 15 14 13
45 45 H 0.97004 * 119.99652 * 359.97438 * 18 16 15
46 46 H 0.97000 * 120.00371 * 0.28325 * 22 21 19
47 47 H 1.08998 * 109.46842 * 59.99987 * 29 27 11
48 48 H 1.09002 * 109.46908 * 180.02562 * 29 27 11
49 49 H 1.08998 * 109.46552 * 300.00190 * 29 27 11
50 50 H 1.08998 * 110.36629 * 322.99596 * 30 9 7
51 51 H 1.08996 * 110.36962 * 85.32103 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 1 3.1263 -0.6443 1.2953
6 9 1.4821 -0.1314 2.3887
7 6 1.6412 -2.1733 1.1890
8 8 0.5142 -2.4796 0.8621
9 7 2.5373 -3.1315 1.4981
10 6 2.2832 -4.5796 1.4817
11 6 3.6000 -5.2802 1.8774
12 1 3.6054 -5.5188 2.9410
13 6 3.8140 -6.5429 1.0402
14 7 2.7826 -7.5336 1.3759
15 6 2.9565 -8.7619 0.5891
16 6 1.8825 -9.7520 0.9595
17 8 1.0539 -9.4630 1.7969
18 7 1.8431 -10.9589 0.3610
19 6 0.8657 -11.8595 0.6976
20 1 0.1275 -11.6019 1.4426
21 6 0.8249 -13.1036 0.0802
22 7 1.7198 -13.4149 -0.8303
23 14 -0.5064 -14.3309 0.5393
24 1 -0.0289 -15.1842 1.6569
25 1 -1.7287 -13.6007 0.9613
26 1 -0.8201 -15.1835 -0.6354
27 6 4.6754 -4.2124 1.5449
28 1 4.9339 -4.2347 0.4862
29 6 5.9200 -4.3980 2.4152
30 6 3.9344 -2.9013 1.9085
31 1 -0.3633 0.5139 0.8899
32 1 -0.3633 0.5139 -0.8901
33 1 -0.3633 -1.0276 -0.0005
34 1 1.8934 -0.5139 -0.8899
35 1 3.1300 1.4425 0.0005
36 1 1.6767 1.9563 -0.8900
37 1 1.6767 1.9563 0.8900
38 1 1.9830 -4.8919 0.4814
39 1 1.5013 -4.8269 2.1997
40 1 4.7992 -6.9576 1.2536
41 1 3.7466 -6.2927 -0.0184
42 1 2.7821 -7.7342 2.3648
43 1 3.9357 -9.1922 0.7990
44 1 2.8829 -8.5268 -0.4726
45 1 2.5060 -11.1901 -0.3084
46 1 2.4114 -12.7778 -1.0685
47 1 6.3430 -5.3869 2.2380
48 1 6.6574 -3.6363 2.1618
49 1 5.6461 -4.3029 3.4659
50 1 4.3578 -2.0611 1.3581
51 1 3.9895 -2.7193 2.9817
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001106548758.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:48
Heat of formation + Delta-G solvation = -128.158000 kcal
Electronic energy + Delta-G solvation = -30295.344273 eV
Core-core repulsion = 25950.626972 eV
Total energy + Delta-G solvation = -4344.717301 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 343.206 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-48.24371 -40.51545 -38.68932 -38.23148 -35.66721 -35.51038 -34.21994 -33.25055
-31.19499 -30.77586 -28.65376 -27.46128 -26.85870 -26.63242 -24.79086 -23.57548
-21.92607 -21.16545 -20.47728 -19.71206 -19.57459 -17.96341 -17.88273 -17.38725
-16.60599 -16.32666 -16.02630 -15.64726 -15.42532 -14.96284 -14.78289 -14.36532
-14.18981 -14.04561 -13.89514 -13.77688 -13.64040 -13.33917 -13.30761 -13.13990
-13.05209 -12.74183 -12.64321 -12.39283 -12.20221 -12.12492 -11.83766 -11.71140
-11.50252 -11.33233 -11.25092 -11.19574 -11.01557 -10.99189 -10.91538 -10.84046
-10.21121 -9.86817 -9.72395 -9.54610 -8.96229 -8.54032 -8.16443 -8.02822
-6.75330 -3.88443 2.13118 2.47643 3.31050 3.36050 3.55372 3.75511
3.84349 3.92472 4.00082 4.04189 4.13920 4.29048 4.36011 4.40386
4.56433 4.82198 4.87515 4.91130 4.93572 4.96015 4.97746 5.08536
5.13172 5.16516 5.24374 5.26747 5.33977 5.43669 5.49557 5.50171
5.57529 5.63670 5.64175 5.69403 5.69506 5.78929 5.83123 5.87284
5.91944 5.93581 6.00983 6.06802 6.27756 7.05050 7.11563 7.52903
7.75455 7.81378 8.08505 8.60095 8.80027 9.47654 9.87650 10.68195
Molecular weight = 343.21amu
Principal moments of inertia in cm(-1)
A = 0.016554 B = 0.001913 C = 0.001780
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1691.051518 B =14630.332976 C =15724.564336
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.110 4.110
3 C -0.148 4.148
4 C 0.088 3.912
5 H 0.097 0.903
6 F -0.187 7.187
7 C 0.505 3.495
8 O -0.509 6.509
9 N -0.614 5.614
10 C 0.120 3.880
11 C -0.091 4.091
12 H 0.088 0.912
13 C 0.070 3.930
14 N -0.669 5.669
15 C 0.052 3.948
16 C 0.443 3.557
17 O -0.575 6.575
18 N -0.576 5.576
19 C -0.381 4.381
20 H 0.099 0.901
21 C -0.010 4.010
22 N -0.902 5.902
23 Si 1.094 2.906
24 H -0.285 1.285
25 H -0.283 1.283
26 H -0.281 1.281
27 C -0.099 4.099
28 H 0.089 0.911
29 C -0.142 4.142
30 C 0.097 3.903
31 H 0.057 0.943
32 H 0.054 0.946
33 H 0.094 0.906
34 H 0.088 0.912
35 H 0.056 0.944
36 H 0.065 0.935
37 H 0.062 0.938
38 H 0.079 0.921
39 H 0.076 0.924
40 H 0.034 0.966
41 H 0.074 0.926
42 H 0.350 0.650
43 H 0.043 0.957
44 H 0.085 0.915
45 H 0.375 0.625
46 H 0.261 0.739
47 H 0.064 0.936
48 H 0.059 0.941
49 H 0.060 0.940
50 H 0.077 0.923
51 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.892 27.089 2.126 29.661
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.129 4.129
3 C -0.206 4.206
4 C 0.049 3.951
5 H 0.115 0.885
6 F -0.168 7.168
7 C 0.290 3.710
8 O -0.384 6.384
9 N -0.348 5.348
10 C -0.001 4.001
11 C -0.111 4.111
12 H 0.106 0.894
13 C -0.060 4.060
14 N -0.301 5.301
15 C -0.081 4.081
16 C 0.228 3.772
17 O -0.459 6.459
18 N -0.214 5.214
19 C -0.511 4.511
20 H 0.117 0.883
21 C -0.212 4.212
22 N -0.541 5.541
23 Si 0.920 3.080
24 H -0.211 1.211
25 H -0.209 1.209
26 H -0.206 1.206
27 C -0.119 4.119
28 H 0.108 0.892
29 C -0.200 4.200
30 C -0.025 4.025
31 H 0.076 0.924
32 H 0.074 0.926
33 H 0.112 0.888
34 H 0.106 0.894
35 H 0.075 0.925
36 H 0.084 0.916
37 H 0.081 0.919
38 H 0.097 0.903
39 H 0.095 0.905
40 H 0.052 0.948
41 H 0.092 0.908
42 H 0.170 0.830
43 H 0.061 0.939
44 H 0.103 0.897
45 H 0.208 0.792
46 H 0.072 0.928
47 H 0.083 0.917
48 H 0.078 0.922
49 H 0.079 0.921
50 H 0.095 0.905
51 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 9.545 25.908 1.783 27.668
hybrid contribution 1.946 1.067 0.415 2.258
sum 11.491 26.975 2.198 29.403
Atomic orbital electron populations
1.22130 0.93015 1.05483 1.01684 1.21569 0.98867 0.96780 0.95709
1.21856 1.00829 0.94941 1.02940 1.21656 0.99084 0.89471 0.84930
0.88488 1.92867 1.87558 1.84475 1.51916 1.20608 0.84984 0.87152
0.78208 1.90673 1.19312 1.82437 1.45929 1.48650 1.12062 1.07467
1.66627 1.21995 0.97552 0.77241 1.03337 1.22313 0.93525 0.94253
1.00986 0.89360 1.21955 0.93039 0.91384 0.99641 1.60051 1.48172
1.10546 1.11364 1.21656 0.96946 0.90374 0.99124 1.19730 0.88303
0.83137 0.85997 1.90538 1.42030 1.77667 1.35640 1.41945 1.28656
1.13482 1.37354 1.20575 1.09167 0.96532 1.24799 0.88273 1.26516
1.02306 0.97715 0.94709 1.70875 1.15295 1.37857 1.30101 0.83089
0.74078 0.74679 0.76170 1.21139 1.20893 1.20639 1.22399 0.94872
0.93367 1.01258 0.89235 1.21722 0.96296 1.02421 0.99521 1.22557
0.80985 0.98541 1.00462 0.92415 0.92646 0.88765 0.89382 0.92473
0.91616 0.91876 0.90274 0.90543 0.94800 0.90793 0.83033 0.93927
0.89667 0.79175 0.92773 0.91738 0.92165 0.92125 0.90475 0.90646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.66 8.71 37.16 0.32 -1.33 16
2 C -0.11 -0.90 2.75 -90.61 -0.25 -1.14 16
3 C -0.15 -0.89 9.11 37.16 0.34 -0.56 16
4 C 0.09 0.78 3.23 -27.88 -0.09 0.69 16
5 H 0.10 0.56 6.11 -51.93 -0.32 0.24 16
6 F -0.19 -2.04 16.03 2.25 0.04 -2.00 16
7 C 0.50 6.03 7.19 -10.98 -0.08 5.95 16
8 O -0.51 -8.04 14.12 5.56 0.08 -7.96 16
9 N -0.61 -6.32 3.33 -170.51 -0.57 -6.89 16
10 C 0.12 1.42 6.28 -3.06 -0.02 1.40 16
11 C -0.09 -0.83 2.60 -88.79 -0.23 -1.06 16
12 H 0.09 0.80 8.04 -51.93 -0.42 0.38 16
13 C 0.07 0.74 5.00 -3.82 -0.02 0.72 16
14 N -0.67 -10.14 5.93 -115.06 -0.68 -10.82 16
15 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16
16 C 0.44 10.44 7.82 -10.99 -0.09 10.36 16
17 O -0.58 -15.82 15.78 5.54 0.09 -15.74 16
18 N -0.58 -14.54 5.28 -10.96 -0.06 -14.60 16
19 C -0.38 -10.82 9.68 -14.93 -0.14 -10.96 16
20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16
21 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16
22 N -0.90 -25.36 13.68 55.50 0.76 -24.60 16
23 Si 1.09 24.55 29.92 -169.99 -5.09 19.46 16
24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
27 C -0.10 -0.63 3.09 -88.46 -0.27 -0.90 16
28 H 0.09 0.55 8.05 -51.93 -0.42 0.13 16
29 C -0.14 -0.70 9.31 37.16 0.35 -0.36 16
30 C 0.10 0.64 6.03 -2.52 -0.02 0.62 16
31 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16
32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.09 1.20 5.25 -51.93 -0.27 0.93 16
34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
37 H 0.06 0.41 7.94 -51.93 -0.41 0.00 16
38 H 0.08 1.08 7.77 -51.93 -0.40 0.67 16
39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16
40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16
41 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16
42 H 0.35 5.50 8.43 -39.29 -0.33 5.17 16
43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
44 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16
45 H 0.38 8.70 6.73 -40.82 -0.27 8.43 16
46 H 0.26 7.03 6.78 -40.82 -0.28 6.76 16
47 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16
48 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
49 H 0.06 0.30 8.07 -51.93 -0.42 -0.12 16
50 H 0.08 0.34 6.73 -51.93 -0.35 -0.01 16
51 H 0.08 0.45 7.98 -51.93 -0.41 0.04 16
LS Contribution 410.07 15.07 6.18 6.18
Total: -1.00 -35.05 410.07 -8.10 -43.16
By element:
Atomic # 1 Polarization: 18.44 SS G_CDS: -8.52 Total: 9.92 kcal
Atomic # 6 Polarization: 4.22 SS G_CDS: -0.32 Total: 3.90 kcal
Atomic # 7 Polarization: -56.36 SS G_CDS: -0.55 Total: -56.91 kcal
Atomic # 8 Polarization: -23.86 SS G_CDS: 0.17 Total: -23.69 kcal
Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal
Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.46 kcal
Total LS contribution 6.18 Total: 6.18 kcal
Total: -35.05 -8.10 -43.16 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001106548758.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.002 kcal
(2) G-P(sol) polarization free energy of solvation -35.055 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.057 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.158 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds