Wall clock time and date at job start Sat Apr 11 2020 07:00:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09005 * 109.46366 * 2 1
4 4 C 1.53047 * 109.44790 * 240.03539 * 2 1 3
5 5 C 1.52759 * 109.38373 * 301.22812 * 4 2 1
6 6 N 1.46921 * 109.00638 * 305.58682 * 5 4 2
7 7 C 1.34781 * 120.63300 * 233.58071 * 6 5 4
8 8 O 1.21554 * 120.00437 * 183.69221 * 7 6 5
9 9 C 1.47848 * 119.99497 * 3.69628 * 7 6 5
10 10 C 1.40022 * 120.55513 * 306.36275 * 9 7 6
11 11 C 1.38360 * 118.28570 * 180.25940 * 10 9 7
12 12 C 1.38352 * 119.30524 * 0.02562 * 11 10 9
13 13 N 1.31932 * 121.07832 * 359.97438 * 12 11 10
14 14 C 1.31700 * 121.87720 * 0.02562 * 13 12 11
15 15 C 1.50699 * 119.71034 * 180.02562 * 14 13 12
16 16 C 1.52996 * 117.50293 * 13.27598 * 15 14 13
17 17 C 1.53001 * 117.49886 * 304.60851 * 15 14 13
18 18 C 1.46923 * 118.74182 * 53.31397 * 6 5 4
19 19 C 1.53039 * 109.46049 * 119.97800 * 2 1 3
20 20 H 1.09003 * 109.50201 * 178.59443 * 19 2 1
21 21 C 1.53005 * 109.49539 * 298.68905 * 19 2 1
22 22 N 1.46502 * 109.47096 * 184.83888 * 21 19 2
23 23 C 1.36933 * 119.99924 * 180.02562 * 22 21 19
24 24 H 1.08001 * 120.00169 * 359.97438 * 23 22 21
25 25 C 1.38816 * 119.99827 * 180.02562 * 23 22 21
26 26 N 1.31613 * 119.99928 * 359.97438 * 25 23 22
27 27 Si 1.86804 * 119.99760 * 179.97438 * 25 23 22
28 28 H 1.48492 * 109.47045 * 0.02562 * 27 25 23
29 29 H 1.48506 * 109.46673 * 119.99974 * 27 25 23
30 30 H 1.48497 * 109.47072 * 239.99528 * 27 25 23
31 31 H 1.09000 * 109.46814 * 300.02454 * 1 2 3
32 32 H 1.09001 * 109.46541 * 60.02596 * 1 2 3
33 33 H 1.09000 * 109.46848 * 180.02562 * 1 2 3
34 34 H 1.09000 * 109.49804 * 61.31032 * 4 2 1
35 35 H 1.09007 * 109.49437 * 181.36834 * 4 2 1
36 36 H 1.08997 * 109.50584 * 185.70896 * 5 4 2
37 37 H 1.09001 * 109.43180 * 65.42527 * 5 4 2
38 38 H 1.08002 * 120.86125 * 0.25092 * 10 9 7
39 39 H 1.08000 * 120.34628 * 179.97438 * 11 10 9
40 40 H 1.07995 * 119.46238 * 180.02562 * 12 11 10
41 41 H 1.09000 * 115.54362 * 158.94595 * 15 14 13
42 42 H 1.08999 * 117.49738 * 359.97438 * 16 15 14
43 43 H 1.08992 * 117.50117 * 145.02434 * 16 15 14
44 44 H 1.08999 * 117.49742 * 214.98183 * 17 15 14
45 45 H 1.08994 * 117.50040 * 359.97438 * 17 15 14
46 46 H 1.09005 * 109.58871 * 66.42340 * 18 6 5
47 47 H 1.08997 * 109.59117 * 186.70795 * 18 6 5
48 48 H 1.08998 * 109.46969 * 304.83673 * 21 19 2
49 49 H 1.08996 * 109.46898 * 64.84117 * 21 19 2
50 50 H 0.97007 * 120.00053 * 359.97438 * 22 21 19
51 51 H 0.97003 * 120.00036 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0396 -0.7208 -1.2503
5 6 1.5039 -2.1513 -1.2645
6 7 1.8620 -2.8089 -0.0004
7 6 2.5156 -3.9876 -0.0005
8 8 2.7469 -4.5545 1.0496
9 6 2.9512 -4.5911 -1.2779
10 6 2.0351 -4.7979 -2.3165
11 6 2.4926 -5.3710 -3.4898
12 6 3.8273 -5.7186 -3.5982
13 7 4.6680 -5.5118 -2.6027
14 6 4.2808 -4.9695 -1.4666
15 6 5.2827 -4.7550 -0.3616
16 6 6.7650 -4.8902 -0.7159
17 6 6.0754 -5.9721 0.1193
18 6 1.4993 -2.1543 1.2640
19 6 2.0399 -0.7210 1.2499
20 1 3.1296 -0.7433 1.2381
21 6 1.5571 0.0192 2.4990
22 7 2.1396 -0.6027 3.6908
23 6 1.8478 -0.1072 4.9335
24 1 1.1887 0.7423 5.0351
25 6 2.4002 -0.6961 6.0627
26 7 3.2038 -1.7310 5.9389
27 14 2.0027 -0.0197 7.7580
28 1 1.0818 1.1376 7.6257
29 1 1.3535 -1.0777 8.5733
30 1 3.2564 0.4180 8.4227
31 1 -0.3633 0.5142 0.8898
32 1 -0.3632 0.5134 -0.8903
33 1 -0.3633 -1.0277 0.0005
34 1 1.6956 -0.1933 -2.1399
35 1 3.1294 -0.7426 -1.2388
36 1 1.9457 -2.6971 -2.0981
37 1 0.4194 -2.1314 -1.3717
38 1 0.9982 -4.5175 -2.2046
39 1 1.8146 -5.5460 -4.3121
40 1 4.1872 -6.1657 -4.5130
41 1 5.0092 -4.0066 0.3821
42 1 7.0154 -5.1347 -1.7481
43 1 7.4667 -4.2311 -0.2049
44 1 6.3239 -6.0241 1.1793
45 1 5.8720 -6.9280 -0.3633
46 1 0.4143 -2.1346 1.3672
47 1 1.9357 -2.7035 2.0982
48 1 1.8671 1.0628 2.4454
49 1 0.4700 -0.0346 2.5557
50 1 2.7313 -1.3659 3.5996
51 1 3.5901 -2.1423 6.7279
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001132956047.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:11
Heat of formation + Delta-G solvation = 39.570533 kcal
Electronic energy + Delta-G solvation = -31036.923274 eV
Core-core repulsion = 27130.248452 eV
Total energy + Delta-G solvation = -3906.674821 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.17745 -39.80085 -37.94228 -36.92958 -34.99880 -33.66740 -32.67894 -31.86091
-31.37969 -29.81000 -27.70577 -26.01443 -25.14526 -24.71392 -23.76184 -23.14879
-22.30357 -21.21490 -20.96456 -20.11498 -18.39892 -17.44706 -17.22558 -16.91386
-16.43951 -16.14514 -15.35659 -15.05917 -14.93048 -14.89388 -14.45225 -14.28335
-14.11018 -13.82566 -13.57121 -13.50419 -13.15455 -12.99169 -12.87941 -12.69118
-12.45414 -11.98576 -11.73814 -11.67223 -11.47935 -11.26785 -11.08793 -10.95015
-10.89987 -10.80655 -10.65596 -10.47690 -10.29103 -10.20047 -10.15284 -9.96176
-9.87448 -9.60754 -9.45609 -8.99996 -8.83534 -8.47472 -6.86909 -5.70246
-2.99847 0.58396 0.89435 2.67144 2.98565 3.37780 3.46730 3.51707
3.54492 3.93765 4.01252 4.25360 4.43249 4.49403 4.60632 4.69406
4.74440 4.84706 4.88092 4.96830 5.05931 5.07797 5.13225 5.17791
5.24574 5.32439 5.39844 5.53309 5.60926 5.65462 5.67260 5.69405
5.71719 5.78564 5.81221 5.88612 5.89640 5.94357 6.00930 6.13269
6.15109 6.20199 6.31246 6.31976 6.34637 6.35682 6.56376 6.63726
6.77723 6.89392 7.42611 7.68096 7.74733 8.20503 8.47398 9.58577
10.16432 10.50547 11.52080
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.011802 B = 0.003290 C = 0.002752
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2371.994942 B = 8508.181432 C =10173.264693
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.085 4.085
3 H 0.074 0.926
4 C -0.129 4.129
5 C 0.099 3.901
6 N -0.602 5.602
7 C 0.559 3.441
8 O -0.513 6.513
9 C -0.166 4.166
10 C -0.045 4.045
11 C -0.187 4.187
12 C 0.118 3.882
13 N -0.484 5.484
14 C 0.212 3.788
15 C -0.122 4.122
16 C -0.159 4.159
17 C -0.148 4.148
18 C 0.120 3.880
19 C -0.102 4.102
20 H 0.073 0.927
21 C 0.161 3.839
22 N -0.733 5.733
23 C -0.241 4.241
24 H 0.070 0.930
25 C -0.013 4.013
26 N -0.929 5.929
27 Si 0.905 3.095
28 H -0.281 1.281
29 H -0.292 1.292
30 H -0.292 1.292
31 H 0.064 0.936
32 H 0.049 0.951
33 H 0.056 0.944
34 H 0.073 0.927
35 H 0.066 0.934
36 H 0.082 0.918
37 H 0.072 0.928
38 H 0.140 0.860
39 H 0.140 0.860
40 H 0.159 0.841
41 H 0.124 0.876
42 H 0.105 0.895
43 H 0.097 0.903
44 H 0.102 0.898
45 H 0.094 0.906
46 H 0.070 0.930
47 H 0.104 0.896
48 H 0.021 0.979
49 H 0.023 0.977
50 H 0.385 0.615
51 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.527 -4.672 -24.860 25.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.104 4.104
3 H 0.092 0.908
4 C -0.167 4.167
5 C -0.024 4.024
6 N -0.335 5.335
7 C 0.345 3.655
8 O -0.388 6.388
9 C -0.172 4.172
10 C -0.072 4.072
11 C -0.206 4.206
12 C -0.039 4.039
13 N -0.193 5.193
14 C 0.074 3.926
15 C -0.141 4.141
16 C -0.196 4.196
17 C -0.185 4.185
18 C -0.001 4.001
19 C -0.121 4.121
20 H 0.092 0.908
21 C 0.033 3.967
22 N -0.378 5.378
23 C -0.372 4.372
24 H 0.088 0.912
25 C -0.209 4.209
26 N -0.577 5.577
27 Si 0.736 3.264
28 H -0.206 1.206
29 H -0.219 1.219
30 H -0.219 1.219
31 H 0.083 0.917
32 H 0.069 0.931
33 H 0.075 0.925
34 H 0.092 0.908
35 H 0.085 0.915
36 H 0.100 0.900
37 H 0.090 0.910
38 H 0.158 0.842
39 H 0.158 0.842
40 H 0.177 0.823
41 H 0.142 0.858
42 H 0.124 0.876
43 H 0.116 0.884
44 H 0.120 0.880
45 H 0.113 0.887
46 H 0.088 0.912
47 H 0.122 0.878
48 H 0.038 0.962
49 H 0.041 0.959
50 H 0.219 0.781
51 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -0.616 -5.118 -24.243 24.785
hybrid contribution -1.072 0.420 0.904 1.464
sum -1.688 -4.698 -23.338 23.866
Atomic orbital electron populations
1.21987 0.95209 1.01943 1.01838 1.21077 0.96018 0.99423 0.93858
0.90770 1.21868 1.01254 0.95016 0.98564 1.21875 1.00297 0.93964
0.86239 1.48095 1.56941 1.20528 1.07937 1.18083 0.78001 0.81127
0.88265 1.90885 1.54827 1.60930 1.32124 1.20738 0.95513 1.04963
0.95939 1.21732 0.99694 0.94148 0.91589 1.22049 0.97675 1.02037
0.98877 1.22898 0.89784 0.94349 0.96873 1.67439 1.38196 1.13419
1.00209 1.20400 0.90476 0.90101 0.91622 1.21009 0.91288 1.03853
0.97955 1.22993 0.92757 1.02162 1.01693 1.22903 1.01961 0.93058
1.00599 1.21790 1.00080 0.92933 0.85282 1.21690 1.00888 0.94332
0.95227 0.90823 1.20677 0.95992 0.94719 0.85326 1.42425 1.57047
1.37505 1.00802 1.19234 1.23327 1.10904 0.83756 0.91217 1.24750
1.00054 0.98304 0.97788 1.69680 1.35519 1.24113 1.28385 0.86151
0.77384 0.77957 0.84892 1.20617 1.21888 1.21917 0.91715 0.93145
0.92486 0.90842 0.91544 0.90003 0.90973 0.84193 0.84188 0.82336
0.85768 0.87643 0.88447 0.87953 0.88734 0.91203 0.87799 0.96151
0.95928 0.78138 0.93546
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.66 8.11 37.16 0.30 -1.36 16
2 C -0.08 -1.02 2.71 -90.57 -0.25 -1.26 16
3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
4 C -0.13 -1.29 5.61 -26.83 -0.15 -1.44 16
5 C 0.10 1.00 5.05 -3.94 -0.02 0.98 16
6 N -0.60 -8.41 2.98 -174.15 -0.52 -8.93 16
7 C 0.56 8.85 6.30 -12.33 -0.08 8.77 16
8 O -0.51 -10.36 15.31 5.32 0.08 -10.28 16
9 C -0.17 -2.17 4.90 -104.82 -0.51 -2.68 16
10 C -0.05 -0.43 7.57 -38.87 -0.29 -0.73 16
11 C -0.19 -1.41 10.10 -39.49 -0.40 -1.81 16
12 C 0.12 1.03 11.17 -17.47 -0.20 0.84 16
13 N -0.48 -5.73 9.36 -9.15 -0.09 -5.82 16
14 C 0.21 2.84 6.47 -82.17 -0.53 2.31 16
15 C -0.12 -1.72 5.18 -91.77 -0.48 -2.19 16
16 C -0.16 -1.86 10.02 -26.69 -0.27 -2.13 16
17 C -0.15 -1.88 10.23 -26.69 -0.27 -2.15 16
18 C 0.12 1.99 5.04 -3.71 -0.02 1.97 16
19 C -0.10 -1.63 2.15 -90.50 -0.19 -1.82 16
20 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
21 C 0.16 3.18 5.19 -4.04 -0.02 3.16 16
22 N -0.73 -18.76 5.38 -59.91 -0.32 -19.08 16
23 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16
24 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16
25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16
26 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16
27 Si 0.90 22.82 29.55 -169.99 -5.02 17.79 16
28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
29 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16
30 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16
31 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16
32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
33 H 0.06 0.62 4.99 -51.93 -0.26 0.36 16
34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.08 0.73 4.73 -51.93 -0.25 0.49 16
37 H 0.07 0.62 6.70 -51.93 -0.35 0.28 16
38 H 0.14 1.06 7.39 -52.49 -0.39 0.67 16
39 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16
40 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16
41 H 0.12 2.01 6.81 -51.93 -0.35 1.65 16
42 H 0.11 1.19 7.61 -51.93 -0.40 0.79 16
43 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16
44 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16
45 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16
46 H 0.07 1.11 6.69 -51.93 -0.35 0.77 16
47 H 0.10 2.17 6.23 -51.93 -0.32 1.84 16
48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
49 H 0.02 0.45 6.72 -51.93 -0.35 0.10 16
50 H 0.38 10.55 6.89 -40.82 -0.28 10.27 16
51 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16
LS Contribution 395.15 15.07 5.95 5.95
Total: -1.00 -34.13 395.15 -10.64 -44.77
By element:
Atomic # 1 Polarization: 18.55 SS G_CDS: -7.83 Total: 10.72 kcal
Atomic # 6 Polarization: -3.37 SS G_CDS: -3.62 Total: -7.00 kcal
Atomic # 7 Polarization: -61.76 SS G_CDS: -0.20 Total: -61.96 kcal
Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal
Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -34.13 -10.64 -44.77 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001132956047.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.338 kcal
(2) G-P(sol) polarization free energy of solvation -34.127 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.212 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.571 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds