Wall clock time and date at job start Sat Apr 11 2020 07:00:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09005 * 109.46366 * 2 1
4 4 C 1.53047 * 109.44790 * 240.03539 * 2 1 3
5 5 C 1.52759 * 109.38373 * 301.22812 * 4 2 1
6 6 N 1.46921 * 109.00638 * 305.58682 * 5 4 2
7 7 C 1.34781 * 120.63300 * 233.58071 * 6 5 4
8 8 O 1.21554 * 120.00437 * 183.69221 * 7 6 5
9 9 C 1.47848 * 119.99497 * 3.69628 * 7 6 5
10 10 C 1.40022 * 120.55513 * 306.36275 * 9 7 6
11 11 C 1.38360 * 118.28570 * 180.25940 * 10 9 7
12 12 C 1.38352 * 119.30524 * 0.02562 * 11 10 9
13 13 N 1.31932 * 121.07832 * 359.97438 * 12 11 10
14 14 C 1.31700 * 121.87720 * 0.02562 * 13 12 11
15 15 C 1.50699 * 119.71034 * 180.02562 * 14 13 12
16 16 C 1.52996 * 117.50293 * 13.27598 * 15 14 13
17 17 C 1.53001 * 117.49886 * 304.60851 * 15 14 13
18 18 C 1.46923 * 118.74182 * 53.31397 * 6 5 4
19 19 C 1.53039 * 109.46049 * 119.97800 * 2 1 3
20 20 H 1.09003 * 109.50201 * 178.59443 * 19 2 1
21 21 C 1.53005 * 109.49539 * 298.68905 * 19 2 1
22 22 N 1.46502 * 109.47096 * 184.83888 * 21 19 2
23 23 C 1.36933 * 119.99924 * 180.02562 * 22 21 19
24 24 H 1.08001 * 120.00169 * 359.97438 * 23 22 21
25 25 C 1.38816 * 119.99827 * 180.02562 * 23 22 21
26 26 N 1.31613 * 119.99928 * 359.97438 * 25 23 22
27 27 Si 1.86804 * 119.99760 * 179.97438 * 25 23 22
28 28 H 1.48492 * 109.47045 * 0.02562 * 27 25 23
29 29 H 1.48506 * 109.46673 * 119.99974 * 27 25 23
30 30 H 1.48497 * 109.47072 * 239.99528 * 27 25 23
31 31 H 1.09000 * 109.46814 * 300.02454 * 1 2 3
32 32 H 1.09001 * 109.46541 * 60.02596 * 1 2 3
33 33 H 1.09000 * 109.46848 * 180.02562 * 1 2 3
34 34 H 1.09000 * 109.49804 * 61.31032 * 4 2 1
35 35 H 1.09007 * 109.49437 * 181.36834 * 4 2 1
36 36 H 1.08997 * 109.50584 * 185.70896 * 5 4 2
37 37 H 1.09001 * 109.43180 * 65.42527 * 5 4 2
38 38 H 1.08002 * 120.86125 * 0.25092 * 10 9 7
39 39 H 1.08000 * 120.34628 * 179.97438 * 11 10 9
40 40 H 1.07995 * 119.46238 * 180.02562 * 12 11 10
41 41 H 1.09000 * 115.54362 * 158.94595 * 15 14 13
42 42 H 1.08999 * 117.49738 * 359.97438 * 16 15 14
43 43 H 1.08992 * 117.50117 * 145.02434 * 16 15 14
44 44 H 1.08999 * 117.49742 * 214.98183 * 17 15 14
45 45 H 1.08994 * 117.50040 * 359.97438 * 17 15 14
46 46 H 1.09005 * 109.58871 * 66.42340 * 18 6 5
47 47 H 1.08997 * 109.59117 * 186.70795 * 18 6 5
48 48 H 1.08998 * 109.46969 * 304.83673 * 21 19 2
49 49 H 1.08996 * 109.46898 * 64.84117 * 21 19 2
50 50 H 0.97007 * 120.00053 * 359.97438 * 22 21 19
51 51 H 0.97003 * 120.00036 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0396 -0.7208 -1.2503
5 6 1.5039 -2.1513 -1.2645
6 7 1.8620 -2.8089 -0.0004
7 6 2.5156 -3.9876 -0.0005
8 8 2.7469 -4.5545 1.0496
9 6 2.9512 -4.5911 -1.2779
10 6 2.0351 -4.7979 -2.3165
11 6 2.4926 -5.3710 -3.4898
12 6 3.8273 -5.7186 -3.5982
13 7 4.6680 -5.5118 -2.6027
14 6 4.2808 -4.9695 -1.4666
15 6 5.2827 -4.7550 -0.3616
16 6 6.7650 -4.8902 -0.7159
17 6 6.0754 -5.9721 0.1193
18 6 1.4993 -2.1543 1.2640
19 6 2.0399 -0.7210 1.2499
20 1 3.1296 -0.7433 1.2381
21 6 1.5571 0.0192 2.4990
22 7 2.1396 -0.6027 3.6908
23 6 1.8478 -0.1072 4.9335
24 1 1.1887 0.7423 5.0351
25 6 2.4002 -0.6961 6.0627
26 7 3.2038 -1.7310 5.9389
27 14 2.0027 -0.0197 7.7580
28 1 1.0818 1.1376 7.6257
29 1 1.3535 -1.0777 8.5733
30 1 3.2564 0.4180 8.4227
31 1 -0.3633 0.5142 0.8898
32 1 -0.3632 0.5134 -0.8903
33 1 -0.3633 -1.0277 0.0005
34 1 1.6956 -0.1933 -2.1399
35 1 3.1294 -0.7426 -1.2388
36 1 1.9457 -2.6971 -2.0981
37 1 0.4194 -2.1314 -1.3717
38 1 0.9982 -4.5175 -2.2046
39 1 1.8146 -5.5460 -4.3121
40 1 4.1872 -6.1657 -4.5130
41 1 5.0092 -4.0066 0.3821
42 1 7.0154 -5.1347 -1.7481
43 1 7.4667 -4.2311 -0.2049
44 1 6.3239 -6.0241 1.1793
45 1 5.8720 -6.9280 -0.3633
46 1 0.4143 -2.1346 1.3672
47 1 1.9357 -2.7035 2.0982
48 1 1.8671 1.0628 2.4454
49 1 0.4700 -0.0346 2.5557
50 1 2.7313 -1.3659 3.5996
51 1 3.5901 -2.1423 6.7279
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001132956047.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:11
Heat of formation + Delta-G solvation = 17.915085 kcal
Electronic energy + Delta-G solvation = -31037.862324 eV
Core-core repulsion = 27130.248452 eV
Total energy + Delta-G solvation = -3907.613872 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.15604 -40.82257 -39.17237 -37.90199 -36.67280 -35.06404 -33.59999 -33.46015
-32.24595 -31.42618 -28.76777 -27.51637 -26.25608 -25.67530 -24.89507 -24.68698
-23.31525 -22.61546 -21.92853 -21.23918 -19.65893 -18.97076 -18.37832 -18.11461
-17.37046 -17.23530 -16.80915 -16.32260 -16.12541 -15.93884 -15.73955 -15.40399
-15.25887 -15.10955 -14.87253 -14.54736 -14.50591 -14.30118 -14.03741 -13.86515
-13.62432 -13.06808 -13.01657 -12.90111 -12.74161 -12.66637 -12.46939 -12.45538
-12.14360 -12.04168 -11.92228 -11.86936 -11.75242 -11.50687 -11.40864 -11.26273
-11.19604 -10.96223 -10.72967 -10.42545 -9.85893 -9.62926 -9.01955 -7.95765
-5.26248 -0.23581 0.15063 1.43904 1.45939 1.51041 1.56047 1.90048
2.53069 2.54004 3.03913 3.11298 3.30164 3.37344 3.55625 3.67877
3.76805 3.81818 3.85529 3.92618 4.03234 4.07538 4.11837 4.16843
4.18093 4.24912 4.35880 4.48124 4.50046 4.55018 4.59788 4.66243
4.68095 4.75127 4.80593 4.88849 4.90435 4.95408 4.98756 5.05532
5.08640 5.10951 5.14744 5.21762 5.23785 5.28198 5.38000 5.45682
5.48062 5.59076 5.63042 6.24615 6.30420 6.89284 7.03008 7.30089
8.06494 8.28594 9.27866
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.011802 B = 0.003290 C = 0.002752
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2371.994942 B = 8508.181432 C =10173.264693
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.079 4.079
3 H 0.080 0.920
4 C -0.123 4.123
5 C 0.094 3.906
6 N -0.597 5.597
7 C 0.554 3.446
8 O -0.576 6.576
9 C -0.188 4.188
10 C -0.043 4.043
11 C -0.164 4.164
12 C 0.118 3.882
13 N -0.500 5.500
14 C 0.192 3.808
15 C -0.142 4.142
16 C -0.137 4.137
17 C -0.153 4.153
18 C 0.130 3.870
19 C -0.089 4.089
20 H 0.046 0.954
21 C 0.160 3.840
22 N -0.749 5.749
23 C -0.244 4.244
24 H 0.080 0.920
25 C -0.080 4.080
26 N -0.972 5.972
27 Si 0.976 3.024
28 H -0.261 1.261
29 H -0.295 1.295
30 H -0.293 1.293
31 H 0.049 0.951
32 H 0.082 0.918
33 H 0.057 0.943
34 H 0.114 0.886
35 H 0.051 0.949
36 H 0.101 0.899
37 H 0.100 0.900
38 H 0.164 0.836
39 H 0.187 0.813
40 H 0.197 0.803
41 H 0.087 0.913
42 H 0.117 0.883
43 H 0.103 0.897
44 H 0.094 0.906
45 H 0.099 0.901
46 H 0.078 0.922
47 H 0.048 0.952
48 H 0.024 0.976
49 H 0.033 0.967
50 H 0.369 0.631
51 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.576 -3.792 -29.220 29.681
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.098 4.098
3 H 0.098 0.902
4 C -0.161 4.161
5 C -0.027 4.027
6 N -0.328 5.328
7 C 0.343 3.657
8 O -0.455 6.455
9 C -0.194 4.194
10 C -0.069 4.069
11 C -0.183 4.183
12 C -0.039 4.039
13 N -0.209 5.209
14 C 0.055 3.945
15 C -0.161 4.161
16 C -0.174 4.174
17 C -0.190 4.190
18 C 0.008 3.992
19 C -0.109 4.109
20 H 0.064 0.936
21 C 0.034 3.966
22 N -0.391 5.391
23 C -0.375 4.375
24 H 0.098 0.902
25 C -0.272 4.272
26 N -0.623 5.623
27 Si 0.805 3.195
28 H -0.185 1.185
29 H -0.222 1.222
30 H -0.221 1.221
31 H 0.068 0.932
32 H 0.101 0.899
33 H 0.075 0.925
34 H 0.132 0.868
35 H 0.070 0.930
36 H 0.119 0.881
37 H 0.118 0.882
38 H 0.181 0.819
39 H 0.204 0.796
40 H 0.214 0.786
41 H 0.105 0.895
42 H 0.135 0.865
43 H 0.122 0.878
44 H 0.112 0.888
45 H 0.118 0.882
46 H 0.096 0.904
47 H 0.067 0.933
48 H 0.042 0.958
49 H 0.051 0.949
50 H 0.201 0.799
51 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges -2.705 -4.170 -28.667 29.094
hybrid contribution -0.469 0.149 2.124 2.180
sum -3.174 -4.021 -26.543 27.032
Atomic orbital electron populations
1.21958 0.93640 1.02234 1.02719 1.21066 0.97194 0.99242 0.92287
0.90183 1.21867 1.00426 0.94962 0.98818 1.22244 1.02102 0.93815
0.84503 1.48146 1.56168 1.20043 1.08470 1.18683 0.77087 0.81159
0.88810 1.90841 1.57198 1.62817 1.34682 1.20547 0.96327 1.06939
0.95544 1.22044 1.00030 0.93737 0.91077 1.22519 0.97733 0.99180
0.98892 1.23664 0.90249 0.93049 0.96972 1.67434 1.39408 1.13837
1.00234 1.20220 0.90402 0.91694 0.92157 1.20880 0.93186 1.03606
0.98443 1.23014 0.91386 1.01003 1.01963 1.22903 1.02364 0.93278
1.00475 1.21418 0.99850 0.92658 0.85302 1.21540 0.99155 0.94206
0.96008 0.93566 1.20866 0.96102 0.94761 0.84903 1.42699 1.57073
1.37293 1.02053 1.19700 1.22364 1.10532 0.84932 0.90223 1.25658
1.00599 0.98987 1.01942 1.69877 1.37361 1.25992 1.29031 0.85034
0.77183 0.77614 0.79699 1.18525 1.22182 1.22072 0.93240 0.89885
0.92451 0.86822 0.93016 0.88100 0.88233 0.81895 0.79602 0.78600
0.89509 0.86519 0.87835 0.88764 0.88245 0.90408 0.93310 0.95829
0.94933 0.79909 0.94177
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.78 8.11 71.98 0.58 -2.20 16
2 C -0.08 -1.76 2.71 -10.76 -0.03 -1.79 16
3 H 0.08 1.73 8.14 -2.38 -0.02 1.72 16
4 C -0.12 -2.12 5.61 30.53 0.17 -1.95 16
5 C 0.09 1.66 5.05 86.22 0.44 2.09 16
6 N -0.60 -17.17 2.98 -823.15 -2.45 -19.63 16
7 C 0.55 18.78 6.30 86.79 0.55 19.33 16
8 O -0.58 -26.04 15.31 -3.89 -0.06 -26.09 16
9 C -0.19 -4.90 4.90 -19.99 -0.10 -5.00 16
10 C -0.04 -0.68 7.57 22.73 0.17 -0.51 16
11 C -0.16 -1.67 10.10 22.33 0.23 -1.44 16
12 C 0.12 1.59 11.17 84.70 0.95 2.53 16
13 N -0.50 -11.06 9.36 -182.85 -1.71 -12.78 16
14 C 0.19 5.26 6.47 42.89 0.28 5.54 16
15 C -0.14 -4.37 5.18 -11.54 -0.06 -4.43 16
16 C -0.14 -3.36 10.02 30.62 0.31 -3.05 16
17 C -0.15 -4.23 10.23 30.62 0.31 -3.91 16
18 C 0.13 4.61 5.04 86.36 0.44 5.05 16
19 C -0.09 -2.99 2.15 -10.71 -0.02 -3.01 16
20 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
21 C 0.16 6.53 5.19 86.38 0.45 6.98 16
22 N -0.75 -40.43 5.38 -343.44 -1.85 -42.27 16
23 C -0.24 -14.21 9.99 84.03 0.84 -13.37 16
24 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16
25 C -0.08 -4.83 5.50 84.86 0.47 -4.37 16
26 N -0.97 -63.61 13.06 21.65 0.28 -63.33 16
27 Si 0.98 48.16 29.55 68.60 2.03 50.18 16
28 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16
29 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16
30 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16
31 H 0.05 1.09 6.57 -2.39 -0.02 1.07 16
32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
33 H 0.06 1.08 4.99 -2.39 -0.01 1.06 16
34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16
35 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16
36 H 0.10 1.45 4.73 -2.39 -0.01 1.44 16
37 H 0.10 1.28 6.70 -2.39 -0.02 1.26 16
38 H 0.16 1.78 7.39 -2.91 -0.02 1.76 16
39 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16
40 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16
41 H 0.09 3.26 6.81 -2.39 -0.02 3.25 16
42 H 0.12 2.59 7.61 -2.39 -0.02 2.57 16
43 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16
44 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16
45 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16
46 H 0.08 2.57 6.69 -2.38 -0.02 2.56 16
47 H 0.05 2.28 6.23 -2.39 -0.01 2.27 16
48 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16
49 H 0.03 1.29 6.72 -2.39 -0.02 1.27 16
50 H 0.37 22.00 6.89 -92.70 -0.64 21.36 16
51 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16
Total: -1.00 -82.92 395.15 2.51 -80.41
By element:
Atomic # 1 Polarization: 36.70 SS G_CDS: 0.31 Total: 37.01 kcal
Atomic # 6 Polarization: -9.47 SS G_CDS: 5.96 Total: -3.51 kcal
Atomic # 7 Polarization: -132.28 SS G_CDS: -5.73 Total: -138.01 kcal
Atomic # 8 Polarization: -26.04 SS G_CDS: -0.06 Total: -26.09 kcal
Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.18 kcal
Total: -82.92 2.51 -80.41 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001132956047.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.328 kcal
(2) G-P(sol) polarization free energy of solvation -82.922 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.407 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.413 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.915 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds