Wall clock time and date at job start Sat Apr 11 2020 07:00:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53005 * 109.47043 * 2 1
4 4 H 1.08997 * 109.46973 * 181.94863 * 3 2 1
5 5 C 1.50699 * 109.47101 * 61.95129 * 3 2 1
6 6 H 1.08003 * 119.99879 * 239.99805 * 5 3 2
7 7 C 1.37872 * 120.00290 * 59.99880 * 5 3 2
8 8 N 1.31519 * 119.99975 * 0.02562 * 7 5 3
9 9 Si 1.86800 * 120.00191 * 180.02562 * 7 5 3
10 10 H 1.48503 * 109.47186 * 59.99584 * 9 7 5
11 11 H 1.48502 * 109.47256 * 179.97438 * 9 7 5
12 12 H 1.48508 * 109.46913 * 300.00028 * 9 7 5
13 13 N 1.46904 * 109.47085 * 301.94777 * 3 2 1
14 14 C 1.46855 * 110.99584 * 181.20260 * 13 3 2
15 15 C 1.53114 * 109.46484 * 186.25082 * 14 13 3
16 16 C 1.52708 * 109.29658 * 301.51909 * 15 14 13
17 17 C 1.54105 * 109.82645 * 177.75004 * 16 15 14
18 18 C 1.54712 * 101.67886 * 94.28627 * 17 16 15
19 19 H 1.09007 * 110.48035 * 265.79667 * 18 17 16
20 20 C 1.50697 * 110.48492 * 143.16452 * 18 17 16
21 21 C 1.38655 * 120.78722 * 299.71340 * 20 18 17
22 22 C 1.38200 * 119.16145 * 179.80065 * 21 20 18
23 23 N 1.31869 * 120.76590 * 0.48877 * 22 21 20
24 24 C 1.31872 * 121.72234 * 359.74078 * 23 22 21
25 25 C 1.38203 * 120.76618 * 0.02562 * 24 23 22
26 26 C 1.51315 * 104.20972 * 24.47450 * 18 17 16
27 27 O 1.21286 * 124.94745 * 163.77868 * 26 18 17
28 28 N 1.34533 * 110.10261 * 343.80008 * 26 18 17
29 29 C 1.52700 * 110.18788 * 56.63175 * 16 15 14
30 30 C 1.46837 * 111.00007 * 305.53502 * 13 3 2
31 31 H 1.09000 * 109.47278 * 184.75010 * 1 2 3
32 32 H 1.09005 * 109.47242 * 304.75775 * 1 2 3
33 33 H 1.09005 * 109.47294 * 64.75091 * 1 2 3
34 34 H 1.08999 * 109.47317 * 240.00005 * 2 1 3
35 35 H 1.08999 * 109.47364 * 119.99444 * 2 1 3
36 36 H 0.96997 * 119.99809 * 180.02562 * 8 7 5
37 37 H 1.09001 * 109.47142 * 66.25454 * 14 13 3
38 38 H 1.08996 * 109.47382 * 306.24911 * 14 13 3
39 39 H 1.09005 * 109.50461 * 181.57314 * 15 14 13
40 40 H 1.09005 * 109.53604 * 61.47910 * 15 14 13
41 41 H 1.09005 * 110.98821 * 336.18735 * 17 16 15
42 42 H 1.09007 * 111.01796 * 212.39626 * 17 16 15
43 43 H 1.08004 * 120.41523 * 0.02562 * 21 20 18
44 44 H 1.08004 * 119.61435 * 180.20443 * 22 21 20
45 45 H 1.08002 * 119.61186 * 179.97438 * 24 23 22
46 46 H 1.08005 * 120.41527 * 179.97438 * 25 24 23
47 47 H 0.96997 * 124.41701 * 179.82419 * 28 26 18
48 48 H 1.09003 * 109.49774 * 63.32117 * 29 16 15
49 49 H 1.08997 * 109.50360 * 183.42869 * 29 16 15
50 50 H 1.09004 * 109.47722 * 293.75421 * 30 13 3
51 51 H 1.09008 * 109.46925 * 53.75252 * 30 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 3.1294 1.4427 -0.0349
5 6 1.5775 2.1388 1.2539
6 1 0.9539 3.0179 1.1848
7 6 1.9505 1.6537 2.4894
8 7 2.7103 0.5835 2.5737
9 14 1.3766 2.5164 4.0437
10 1 -0.1076 2.5156 4.0911
11 1 1.9097 1.8025 5.2317
12 1 1.8711 3.9167 4.0439
13 7 1.5122 2.1485 -1.1752
14 6 2.0049 3.5311 -1.2237
15 6 1.3150 4.2788 -2.3680
16 6 1.5953 3.5568 -3.6841
17 6 0.8599 4.2672 -4.8370
18 6 1.9582 5.2170 -5.3709
19 1 1.8694 6.2005 -4.9093
20 6 1.8757 5.3279 -6.8715
21 6 2.0243 4.2079 -7.6752
22 6 1.9383 4.3475 -9.0475
23 7 1.7274 5.5292 -9.5934
24 6 1.5860 6.6163 -8.8604
25 6 1.6552 6.5533 -7.4816
26 6 3.2547 4.5541 -4.9594
27 8 4.3465 4.8201 -5.4158
28 7 3.0199 3.6264 -4.0138
29 6 1.1373 2.1028 -3.5954
30 6 1.8327 1.4245 -2.4118
31 1 -0.3634 -1.0241 0.0851
32 1 -0.3634 0.5859 0.8443
33 1 -0.3634 0.4384 -0.9295
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5137 0.8900
36 1 2.9724 0.2420 3.4429
37 1 3.0822 3.5273 -1.3896
38 1 1.7844 4.0287 -0.2794
39 1 1.7006 5.2969 -2.4222
40 1 0.2399 4.3059 -2.1898
41 1 0.0036 4.8303 -4.4656
42 1 0.5536 3.5549 -5.6031
43 1 2.2014 3.2380 -7.2342
44 1 2.0496 3.4794 -9.6803
45 1 1.4148 7.5671 -9.3434
46 1 1.5389 7.4473 -6.8868
47 1 3.7051 3.0753 -3.6043
48 1 0.0574 2.0697 -3.4506
49 1 1.3973 1.5825 -4.5172
50 1 2.9112 1.4346 -2.5698
51 1 1.4873 0.3939 -2.3294
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001255169056.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:02
Heat of formation + Delta-G solvation = 2.244316 kcal
Electronic energy + Delta-G solvation = -31038.450888 eV
Core-core repulsion = 27130.157481 eV
Total energy + Delta-G solvation = -3908.293408 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.48904 -40.03894 -38.34105 -36.52482 -34.45439 -33.28420 -31.59839 -31.46853
-30.89382 -30.53012 -29.43950 -26.76299 -25.19219 -23.82275 -23.49881 -23.11724
-22.40788 -21.70572 -20.62515 -19.58634 -18.83020 -17.24941 -17.01457 -16.53297
-16.21688 -15.84615 -15.71211 -15.26817 -14.70204 -14.45974 -14.32217 -14.14729
-13.91474 -13.84257 -13.72183 -13.64023 -13.28252 -13.03428 -12.84932 -12.70906
-12.14880 -12.07095 -11.90477 -11.67327 -11.49335 -11.39354 -10.98345 -10.90941
-10.89953 -10.58729 -10.48828 -10.31884 -10.18041 -9.94085 -9.76063 -9.67853
-9.53411 -9.42639 -9.39391 -9.11474 -8.84145 -8.45325 -7.25602 -6.06436
-4.10551 0.89460 0.95425 2.46685 3.24347 3.26973 3.32558 3.34417
3.54630 4.02598 4.19374 4.23076 4.31998 4.34727 4.54638 4.69922
4.75916 4.81715 4.86582 4.91885 5.01016 5.11026 5.25249 5.35804
5.45861 5.51614 5.56227 5.56556 5.67445 5.71110 5.81588 5.82436
5.93669 6.01111 6.06621 6.22508 6.30071 6.42255 6.43744 6.47707
6.52952 6.62008 6.71458 6.79283 6.99107 7.03024 7.23113 7.33109
7.58397 7.67625 7.72264 7.76778 8.09932 8.16945 8.26529 8.51277
8.94225 9.53821 10.99778
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.023747 B = 0.002521 C = 0.002441
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1178.789077 B =11104.252350 C =11466.340496
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.114 4.114
3 C 0.219 3.781
4 H -0.004 1.004
5 C -0.497 4.497
6 H 0.061 0.939
7 C 0.060 3.940
8 N -0.892 5.892
9 Si 0.893 3.107
10 H -0.277 1.277
11 H -0.289 1.289
12 H -0.279 1.279
13 N -0.526 5.526
14 C 0.064 3.936
15 C -0.119 4.119
16 C 0.159 3.841
17 C -0.113 4.113
18 C -0.088 4.088
19 H 0.119 0.881
20 C -0.016 4.016
21 C -0.161 4.161
22 C 0.101 3.899
23 N -0.489 5.489
24 C 0.099 3.901
25 C -0.163 4.163
26 C 0.527 3.473
27 O -0.532 6.532
28 N -0.711 5.711
29 C -0.114 4.114
30 C 0.049 3.951
31 H 0.015 0.985
32 H 0.060 0.940
33 H 0.039 0.961
34 H 0.013 0.987
35 H 0.092 0.908
36 H 0.261 0.739
37 H 0.017 0.983
38 H 0.088 0.912
39 H 0.061 0.939
40 H 0.083 0.917
41 H 0.096 0.904
42 H 0.086 0.914
43 H 0.131 0.869
44 H 0.156 0.844
45 H 0.156 0.844
46 H 0.136 0.864
47 H 0.412 0.588
48 H 0.085 0.915
49 H 0.064 0.936
50 H 0.016 0.984
51 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.285 7.215 -17.336 19.507
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.152 4.152
3 C 0.113 3.887
4 H 0.013 0.987
5 C -0.536 4.536
6 H 0.080 0.920
7 C -0.141 4.141
8 N -0.531 5.531
9 Si 0.721 3.279
10 H -0.202 1.202
11 H -0.214 1.214
12 H -0.204 1.204
13 N -0.251 5.251
14 C -0.064 4.064
15 C -0.158 4.158
16 C 0.073 3.927
17 C -0.151 4.151
18 C -0.110 4.110
19 H 0.137 0.863
20 C -0.024 4.024
21 C -0.180 4.180
22 C -0.055 4.055
23 N -0.198 5.198
24 C -0.058 4.058
25 C -0.183 4.183
26 C 0.312 3.688
27 O -0.408 6.408
28 N -0.366 5.366
29 C -0.152 4.152
30 C -0.080 4.080
31 H 0.034 0.966
32 H 0.079 0.921
33 H 0.058 0.942
34 H 0.032 0.968
35 H 0.111 0.889
36 H 0.071 0.929
37 H 0.035 0.965
38 H 0.107 0.893
39 H 0.080 0.920
40 H 0.102 0.898
41 H 0.115 0.885
42 H 0.105 0.895
43 H 0.149 0.851
44 H 0.173 0.827
45 H 0.173 0.827
46 H 0.154 0.846
47 H 0.253 0.747
48 H 0.104 0.896
49 H 0.082 0.918
50 H 0.034 0.966
51 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -5.250 7.373 -18.334 20.447
hybrid contribution 1.044 0.030 2.112 2.356
sum -4.206 7.404 -16.223 18.322
Atomic orbital electron populations
1.21473 0.97191 0.97681 1.01459 1.21613 0.95207 0.98220 1.00168
1.19237 0.92387 0.90704 0.86361 0.98683 1.20986 1.31080 1.11942
0.89582 0.92048 1.24900 0.95164 0.95071 0.98958 1.69859 1.36194
1.22537 1.24522 0.86642 0.79083 0.79563 0.82597 1.20219 1.21436
1.20421 1.62028 1.59990 1.01085 1.02043 1.21913 0.95293 0.90893
0.98305 1.22010 1.02436 0.98049 0.93314 1.20853 0.79815 0.97161
0.94895 1.22850 0.97106 0.97734 0.97456 1.21036 0.95449 1.02066
0.92441 0.86304 1.19741 0.95131 0.93591 0.93969 1.21986 1.01462
0.99446 0.95148 1.22719 0.94891 0.95384 0.92547 1.67669 1.11925
0.99134 1.41051 1.22744 0.95250 0.97142 0.90651 1.22046 1.01944
0.97885 0.96443 1.20503 0.89664 0.79683 0.78977 1.90759 1.27187
1.65321 1.57523 1.46355 1.10013 1.39528 1.40672 1.21863 1.02086
0.92798 0.98457 1.22110 0.96315 0.99045 0.90493 0.96578 0.92127
0.94152 0.96799 0.88938 0.92915 0.96456 0.89344 0.92022 0.89826
0.88496 0.89518 0.85063 0.82694 0.82669 0.84616 0.74731 0.89612
0.91754 0.96632 0.90094
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.45 9.43 37.16 0.35 -2.10 16
2 C -0.11 -2.52 4.95 -26.73 -0.13 -2.65 16
3 C 0.22 4.98 1.76 -68.86 -0.12 4.86 16
4 H 0.00 -0.11 8.14 -51.93 -0.42 -0.54 16
5 C -0.50 -12.44 6.61 -34.44 -0.23 -12.67 16
6 H 0.06 1.54 6.79 -52.48 -0.36 1.18 16
7 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16
8 N -0.89 -24.24 11.31 55.43 0.63 -23.61 16
9 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16
10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16
12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
13 N -0.53 -9.59 3.78 -227.97 -0.86 -10.45 16
14 C 0.06 1.08 5.16 -3.79 -0.02 1.06 16
15 C -0.12 -1.47 4.97 -26.82 -0.13 -1.60 16
16 C 0.16 1.72 0.72 -131.61 -0.10 1.62 16
17 C -0.11 -0.95 5.63 -25.25 -0.14 -1.10 16
18 C -0.09 -0.86 3.19 -91.72 -0.29 -1.15 16
19 H 0.12 1.00 8.01 -51.92 -0.42 0.58 16
20 C -0.02 -0.16 4.79 -104.32 -0.50 -0.66 16
21 C -0.16 -1.61 8.61 -39.44 -0.34 -1.94 16
22 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16
23 N -0.49 -5.36 10.36 -13.25 -0.14 -5.50 16
24 C 0.10 0.91 11.18 -17.55 -0.20 0.72 16
25 C -0.16 -1.45 9.78 -39.44 -0.39 -1.84 16
26 C 0.53 6.89 7.41 -10.79 -0.08 6.81 16
27 O -0.53 -9.09 17.86 5.55 0.10 -8.99 16
28 N -0.71 -8.64 5.00 -47.26 -0.24 -8.88 16
29 C -0.11 -1.30 4.98 -26.82 -0.13 -1.44 16
30 C 0.05 0.75 4.76 -3.80 -0.02 0.73 16
31 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16
32 H 0.06 1.35 7.12 -51.93 -0.37 0.98 16
33 H 0.04 0.75 7.27 -51.93 -0.38 0.37 16
34 H 0.01 0.28 6.31 -51.93 -0.33 -0.05 16
35 H 0.09 2.35 6.02 -51.93 -0.31 2.03 16
36 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16
37 H 0.02 0.31 7.72 -51.93 -0.40 -0.10 16
38 H 0.09 1.67 6.37 -51.93 -0.33 1.34 16
39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
40 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16
41 H 0.10 0.67 7.85 -51.93 -0.41 0.27 16
42 H 0.09 0.68 7.00 -51.93 -0.36 0.31 16
43 H 0.13 1.21 7.93 -52.48 -0.42 0.79 16
44 H 0.16 1.15 8.06 -52.48 -0.42 0.72 16
45 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16
46 H 0.14 0.88 8.03 -52.48 -0.42 0.46 16
47 H 0.41 5.37 7.73 -40.82 -0.32 5.05 16
48 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
50 H 0.02 0.25 7.09 -51.93 -0.37 -0.12 16
51 H 0.08 1.30 5.61 -51.92 -0.29 1.01 16
LS Contribution 389.71 15.07 5.87 5.87
Total: -1.00 -29.99 389.71 -10.41 -40.39
By element:
Atomic # 1 Polarization: 12.84 SS G_CDS: -7.99 Total: 4.85 kcal
Atomic # 6 Polarization: -6.30 SS G_CDS: -2.76 Total: -9.06 kcal
Atomic # 7 Polarization: -47.84 SS G_CDS: -0.61 Total: -48.44 kcal
Atomic # 8 Polarization: -9.09 SS G_CDS: 0.10 Total: -8.99 kcal
Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -29.99 -10.41 -40.39 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255169056.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.637 kcal
(2) G-P(sol) polarization free energy of solvation -29.986 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.651 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.244 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds