Wall clock time and date at job start Sat Apr 11 2020 07:00:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53005 * 109.47043 * 2 1
4 4 H 1.08997 * 109.46973 * 181.94863 * 3 2 1
5 5 C 1.50699 * 109.47101 * 61.95129 * 3 2 1
6 6 H 1.08003 * 119.99879 * 239.99805 * 5 3 2
7 7 C 1.37872 * 120.00290 * 59.99880 * 5 3 2
8 8 N 1.31519 * 119.99975 * 0.02562 * 7 5 3
9 9 Si 1.86800 * 120.00191 * 180.02562 * 7 5 3
10 10 H 1.48503 * 109.47186 * 59.99584 * 9 7 5
11 11 H 1.48502 * 109.47256 * 179.97438 * 9 7 5
12 12 H 1.48508 * 109.46913 * 300.00028 * 9 7 5
13 13 N 1.46904 * 109.47085 * 301.94777 * 3 2 1
14 14 C 1.46855 * 110.99584 * 181.20260 * 13 3 2
15 15 C 1.53114 * 109.46484 * 186.25082 * 14 13 3
16 16 C 1.52708 * 109.29658 * 301.51909 * 15 14 13
17 17 C 1.54105 * 109.82645 * 177.75004 * 16 15 14
18 18 C 1.54712 * 101.67886 * 94.28627 * 17 16 15
19 19 H 1.09007 * 110.48035 * 265.79667 * 18 17 16
20 20 C 1.50697 * 110.48492 * 143.16452 * 18 17 16
21 21 C 1.38655 * 120.78722 * 299.71340 * 20 18 17
22 22 C 1.38200 * 119.16145 * 179.80065 * 21 20 18
23 23 N 1.31869 * 120.76590 * 0.48877 * 22 21 20
24 24 C 1.31872 * 121.72234 * 359.74078 * 23 22 21
25 25 C 1.38203 * 120.76618 * 0.02562 * 24 23 22
26 26 C 1.51315 * 104.20972 * 24.47450 * 18 17 16
27 27 O 1.21286 * 124.94745 * 163.77868 * 26 18 17
28 28 N 1.34533 * 110.10261 * 343.80008 * 26 18 17
29 29 C 1.52700 * 110.18788 * 56.63175 * 16 15 14
30 30 C 1.46837 * 111.00007 * 305.53502 * 13 3 2
31 31 H 1.09000 * 109.47278 * 184.75010 * 1 2 3
32 32 H 1.09005 * 109.47242 * 304.75775 * 1 2 3
33 33 H 1.09005 * 109.47294 * 64.75091 * 1 2 3
34 34 H 1.08999 * 109.47317 * 240.00005 * 2 1 3
35 35 H 1.08999 * 109.47364 * 119.99444 * 2 1 3
36 36 H 0.96997 * 119.99809 * 180.02562 * 8 7 5
37 37 H 1.09001 * 109.47142 * 66.25454 * 14 13 3
38 38 H 1.08996 * 109.47382 * 306.24911 * 14 13 3
39 39 H 1.09005 * 109.50461 * 181.57314 * 15 14 13
40 40 H 1.09005 * 109.53604 * 61.47910 * 15 14 13
41 41 H 1.09005 * 110.98821 * 336.18735 * 17 16 15
42 42 H 1.09007 * 111.01796 * 212.39626 * 17 16 15
43 43 H 1.08004 * 120.41523 * 0.02562 * 21 20 18
44 44 H 1.08004 * 119.61435 * 180.20443 * 22 21 20
45 45 H 1.08002 * 119.61186 * 179.97438 * 24 23 22
46 46 H 1.08005 * 120.41527 * 179.97438 * 25 24 23
47 47 H 0.96997 * 124.41701 * 179.82419 * 28 26 18
48 48 H 1.09003 * 109.49774 * 63.32117 * 29 16 15
49 49 H 1.08997 * 109.50360 * 183.42869 * 29 16 15
50 50 H 1.09004 * 109.47722 * 293.75421 * 30 13 3
51 51 H 1.09008 * 109.46925 * 53.75252 * 30 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 3.1294 1.4427 -0.0349
5 6 1.5775 2.1388 1.2539
6 1 0.9539 3.0179 1.1848
7 6 1.9505 1.6537 2.4894
8 7 2.7103 0.5835 2.5737
9 14 1.3766 2.5164 4.0437
10 1 -0.1076 2.5156 4.0911
11 1 1.9097 1.8025 5.2317
12 1 1.8711 3.9167 4.0439
13 7 1.5122 2.1485 -1.1752
14 6 2.0049 3.5311 -1.2237
15 6 1.3150 4.2788 -2.3680
16 6 1.5953 3.5568 -3.6841
17 6 0.8599 4.2672 -4.8370
18 6 1.9582 5.2170 -5.3709
19 1 1.8694 6.2005 -4.9093
20 6 1.8757 5.3279 -6.8715
21 6 2.0243 4.2079 -7.6752
22 6 1.9383 4.3475 -9.0475
23 7 1.7274 5.5292 -9.5934
24 6 1.5860 6.6163 -8.8604
25 6 1.6552 6.5533 -7.4816
26 6 3.2547 4.5541 -4.9594
27 8 4.3465 4.8201 -5.4158
28 7 3.0199 3.6264 -4.0138
29 6 1.1373 2.1028 -3.5954
30 6 1.8327 1.4245 -2.4118
31 1 -0.3634 -1.0241 0.0851
32 1 -0.3634 0.5859 0.8443
33 1 -0.3634 0.4384 -0.9295
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5137 0.8900
36 1 2.9724 0.2420 3.4429
37 1 3.0822 3.5273 -1.3896
38 1 1.7844 4.0287 -0.2794
39 1 1.7006 5.2969 -2.4222
40 1 0.2399 4.3059 -2.1898
41 1 0.0036 4.8303 -4.4656
42 1 0.5536 3.5549 -5.6031
43 1 2.2014 3.2380 -7.2342
44 1 2.0496 3.4794 -9.6803
45 1 1.4148 7.5671 -9.3434
46 1 1.5389 7.4473 -6.8868
47 1 3.7051 3.0753 -3.6043
48 1 0.0574 2.0697 -3.4506
49 1 1.3973 1.5825 -4.5172
50 1 2.9112 1.4346 -2.5698
51 1 1.4873 0.3939 -2.3294
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001255169056.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:01
Heat of formation + Delta-G solvation = -16.544300 kcal
Electronic energy + Delta-G solvation = -31039.265624 eV
Core-core repulsion = 27130.157481 eV
Total energy + Delta-G solvation = -3909.108143 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.39289 -40.81551 -39.60569 -37.83365 -35.61122 -34.55570 -33.27078 -32.14129
-32.05597 -31.60064 -30.53558 -28.38478 -26.44401 -25.11166 -24.41986 -24.10238
-23.54580 -22.87123 -21.53337 -21.02595 -20.07619 -18.24435 -18.05844 -17.87243
-17.30238 -17.19161 -16.49461 -16.37474 -16.01066 -15.73829 -15.51623 -15.30078
-15.15407 -14.80455 -14.73749 -14.57102 -14.50688 -14.19442 -14.07474 -13.69708
-13.57839 -13.38502 -12.94585 -12.82214 -12.72854 -12.54774 -12.52878 -12.38967
-12.27410 -12.07030 -11.93072 -11.63389 -11.61356 -11.35204 -11.26317 -10.97616
-10.73041 -10.44263 -10.42766 -10.33413 -10.08990 -10.04135 -8.83939 -8.06235
-6.15729 0.22859 0.25000 1.43437 1.44331 1.48196 1.50965 2.29902
2.44078 2.83654 3.19557 3.23253 3.39476 3.46804 3.53981 3.62616
3.82014 3.88307 4.00042 4.04394 4.18314 4.27769 4.37359 4.37752
4.48941 4.60090 4.63289 4.67216 4.72571 4.75063 4.81757 4.88243
4.91096 4.93230 4.99119 5.02456 5.10191 5.12781 5.21247 5.25415
5.31993 5.32356 5.36114 5.51094 5.55662 5.76064 5.78268 5.81195
5.83413 5.93600 6.02194 6.36301 6.46964 6.81952 6.98288 7.04751
7.15292 7.52240 8.98758
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.023747 B = 0.002521 C = 0.002441
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1178.789077 B =11104.252350 C =11466.340496
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.110 4.110
3 C 0.225 3.775
4 H -0.052 1.052
5 C -0.498 4.498
6 H 0.060 0.940
7 C 0.012 3.988
8 N -0.922 5.922
9 Si 0.949 3.051
10 H -0.269 1.269
11 H -0.291 1.291
12 H -0.275 1.275
13 N -0.521 5.521
14 C 0.064 3.936
15 C -0.109 4.109
16 C 0.162 3.838
17 C -0.100 4.100
18 C -0.078 4.078
19 H 0.138 0.862
20 C -0.028 4.028
21 C -0.170 4.170
22 C 0.089 3.911
23 N -0.514 5.514
24 C 0.090 3.910
25 C -0.163 4.163
26 C 0.523 3.477
27 O -0.580 6.580
28 N -0.712 5.712
29 C -0.104 4.104
30 C 0.047 3.953
31 H 0.032 0.968
32 H 0.036 0.964
33 H 0.059 0.941
34 H 0.028 0.972
35 H 0.057 0.943
36 H 0.258 0.742
37 H -0.001 1.001
38 H 0.061 0.939
39 H 0.076 0.924
40 H 0.099 0.901
41 H 0.125 0.875
42 H 0.099 0.901
43 H 0.135 0.865
44 H 0.171 0.829
45 H 0.180 0.820
46 H 0.162 0.838
47 H 0.404 0.596
48 H 0.101 0.899
49 H 0.084 0.916
50 H 0.004 0.996
51 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.847 8.670 -18.914 22.237
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.148 4.148
3 C 0.118 3.882
4 H -0.035 1.035
5 C -0.537 4.537
6 H 0.078 0.922
7 C -0.186 4.186
8 N -0.562 5.562
9 Si 0.776 3.224
10 H -0.194 1.194
11 H -0.217 1.217
12 H -0.200 1.200
13 N -0.246 5.246
14 C -0.064 4.064
15 C -0.147 4.147
16 C 0.076 3.924
17 C -0.137 4.137
18 C -0.099 4.099
19 H 0.156 0.844
20 C -0.037 4.037
21 C -0.190 4.190
22 C -0.067 4.067
23 N -0.224 5.224
24 C -0.067 4.067
25 C -0.183 4.183
26 C 0.309 3.691
27 O -0.460 6.460
28 N -0.364 5.364
29 C -0.142 4.142
30 C -0.082 4.082
31 H 0.051 0.949
32 H 0.055 0.945
33 H 0.078 0.922
34 H 0.047 0.953
35 H 0.075 0.925
36 H 0.067 0.933
37 H 0.017 0.983
38 H 0.080 0.920
39 H 0.094 0.906
40 H 0.117 0.883
41 H 0.143 0.857
42 H 0.118 0.882
43 H 0.153 0.847
44 H 0.189 0.811
45 H 0.197 0.803
46 H 0.179 0.821
47 H 0.242 0.758
48 H 0.119 0.881
49 H 0.103 0.897
50 H 0.023 0.977
51 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -7.853 8.834 -19.921 23.164
hybrid contribution 1.924 -0.435 2.584 3.250
sum -5.930 8.400 -17.337 20.157
Atomic orbital electron populations
1.21319 0.95272 0.98496 1.01329 1.21474 0.96755 0.97425 0.99153
1.18990 0.89594 0.91713 0.87943 1.03481 1.21246 1.30231 1.11621
0.90581 0.92233 1.25612 0.95514 0.95721 1.01781 1.70012 1.37561
1.23912 1.24728 0.85747 0.78884 0.78553 0.79261 1.19422 1.21725
1.20012 1.61991 1.59230 1.01612 1.01779 1.21909 0.94888 0.90405
0.99241 1.21950 1.02753 0.98102 0.91925 1.20902 0.79262 0.96992
0.95293 1.22869 0.97003 0.97602 0.96275 1.21029 0.93473 1.02872
0.92542 0.84392 1.19879 0.95663 0.94106 0.94034 1.22106 1.01695
0.99851 0.95333 1.23029 0.94852 0.95820 0.92976 1.67695 1.12789
0.99904 1.41986 1.23221 0.94636 0.97672 0.91127 1.22345 1.00917
0.98412 0.96579 1.21104 0.90244 0.79382 0.78341 1.90731 1.29377
1.66761 1.59084 1.46512 1.10610 1.39062 1.40227 1.21826 1.02387
0.92848 0.97119 1.22197 0.96310 0.99004 0.90658 0.94884 0.94532
0.92183 0.95329 0.92452 0.93311 0.98262 0.92005 0.90585 0.88259
0.85720 0.88240 0.84716 0.81145 0.80292 0.82075 0.75755 0.88093
0.89705 0.97733 0.90720
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.23 9.43 71.98 0.68 -3.55 16
2 C -0.11 -4.94 4.95 30.59 0.15 -4.79 16
3 C 0.22 10.57 1.76 44.17 0.08 10.65 16
4 H -0.05 -2.90 8.14 -2.39 -0.02 -2.92 16
5 C -0.50 -25.53 6.61 25.60 0.17 -25.36 16
6 H 0.06 3.02 6.79 -2.91 -0.02 3.00 16
7 C 0.01 0.63 5.30 84.65 0.45 1.08 16
8 N -0.92 -51.98 11.31 21.45 0.24 -51.74 16
9 Si 0.95 42.42 29.54 68.60 2.03 44.45 16
10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16
12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
13 N -0.52 -18.91 3.78 -875.16 -3.30 -22.21 16
14 C 0.06 2.14 5.16 86.35 0.45 2.59 16
15 C -0.11 -2.39 4.97 30.54 0.15 -2.24 16
16 C 0.16 3.00 0.72 3.80 0.00 3.01 16
17 C -0.10 -1.23 5.63 31.55 0.18 -1.05 16
18 C -0.08 -1.26 3.19 -11.51 -0.04 -1.29 16
19 H 0.14 1.73 8.01 -2.38 -0.02 1.71 16
20 C -0.03 -0.49 4.79 -19.67 -0.09 -0.58 16
21 C -0.17 -3.07 8.61 22.36 0.19 -2.88 16
22 C 0.09 1.63 11.18 84.68 0.95 2.58 16
23 N -0.51 -10.46 10.36 -195.84 -2.03 -12.49 16
24 C 0.09 1.45 11.18 84.68 0.95 2.39 16
25 C -0.16 -2.41 9.78 22.36 0.22 -2.19 16
26 C 0.52 12.92 7.41 87.89 0.65 13.57 16
27 O -0.58 -19.75 17.86 -3.05 -0.05 -19.81 16
28 N -0.71 -16.41 5.00 -421.95 -2.11 -18.52 16
29 C -0.10 -2.05 4.98 30.53 0.15 -1.90 16
30 C 0.05 1.38 4.76 86.36 0.41 1.79 16
31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16
32 H 0.04 1.60 7.12 -2.38 -0.02 1.59 16
33 H 0.06 2.11 7.27 -2.38 -0.02 2.09 16
34 H 0.03 1.17 6.31 -2.39 -0.02 1.15 16
35 H 0.06 3.01 6.02 -2.39 -0.01 3.00 16
36 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16
37 H 0.00 -0.03 7.72 -2.39 -0.02 -0.05 16
38 H 0.06 2.38 6.37 -2.39 -0.02 2.36 16
39 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16
40 H 0.10 1.95 8.13 -2.38 -0.02 1.94 16
41 H 0.12 0.97 7.85 -2.38 -0.02 0.95 16
42 H 0.10 1.07 7.00 -2.38 -0.02 1.05 16
43 H 0.13 2.23 7.93 -2.91 -0.02 2.21 16
44 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16
45 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16
46 H 0.16 1.45 8.03 -2.91 -0.02 1.43 16
47 H 0.40 10.59 7.73 -92.71 -0.72 9.87 16
48 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16
49 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
50 H 0.00 0.14 7.09 -2.38 -0.02 0.13 16
51 H 0.07 2.31 5.61 -2.38 -0.01 2.29 16
Total: -1.00 -68.83 389.71 0.68 -68.15
By element:
Atomic # 1 Polarization: 20.11 SS G_CDS: 0.22 Total: 20.33 kcal
Atomic # 6 Polarization: -13.85 SS G_CDS: 5.69 Total: -8.16 kcal
Atomic # 7 Polarization: -97.76 SS G_CDS: -7.20 Total: -104.96 kcal
Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.81 kcal
Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal
Total: -68.83 0.68 -68.15 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255169056.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.605 kcal
(2) G-P(sol) polarization free energy of solvation -68.832 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.228 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.149 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.544 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds