Wall clock time and date at job start Sat Apr 11 2020 07:02:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53008 * 109.47068 * 2 1
4 4 N 1.46506 * 109.46824 * 179.97438 * 3 2 1
5 5 C 1.36933 * 120.00104 * 269.99638 * 4 3 2
6 6 H 1.07995 * 120.00081 * 142.67872 * 5 4 3
7 7 C 1.38820 * 119.99869 * 322.68454 * 5 4 3
8 8 N 1.31618 * 120.00025 * 157.17413 * 7 5 4
9 9 Si 1.86793 * 120.00008 * 337.17562 * 7 5 4
10 10 H 1.48503 * 109.47291 * 95.36233 * 9 7 5
11 11 H 1.48498 * 109.47124 * 215.36261 * 9 7 5
12 12 H 1.48504 * 109.47334 * 335.36092 * 9 7 5
13 13 C 1.46498 * 119.99718 * 90.00306 * 4 3 2
14 14 C 1.53003 * 109.46929 * 267.60726 * 13 4 3
15 15 N 1.46499 * 109.47009 * 178.14871 * 14 13 4
16 16 C 1.34782 * 119.99704 * 180.02562 * 15 14 13
17 17 O 1.21277 * 119.99936 * 359.97438 * 16 15 14
18 18 C 1.50699 * 119.99664 * 179.97438 * 16 15 14
19 19 C 1.50698 * 109.46887 * 179.97438 * 18 16 15
20 20 C 1.34236 * 126.50341 * 264.99887 * 19 18 16
21 21 N 1.36829 * 109.93218 * 180.02562 * 20 19 18
22 22 H 0.97002 * 125.06285 * 180.02562 * 21 20 19
23 23 C 1.37682 * 109.87422 * 0.02562 * 21 20 19
24 24 C 1.39131 * 133.51066 * 180.02562 * 23 21 20
25 25 C 1.37744 * 119.77886 * 179.73807 * 24 23 21
26 26 C 1.50704 * 119.66488 * 180.27075 * 25 24 23
27 27 C 1.38830 * 120.66659 * 0.51807 * 25 24 23
28 28 C 1.36624 * 120.52731 * 359.45493 * 27 25 24
29 29 C 1.39628 * 119.76564 * 0.28310 * 28 27 25
30 30 H 1.08997 * 109.46848 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.47289 * 299.99856 * 1 2 3
32 32 H 1.08994 * 109.47048 * 59.99859 * 1 2 3
33 33 H 1.09001 * 109.47289 * 240.00144 * 2 1 3
34 34 H 1.09002 * 109.47346 * 119.99576 * 2 1 3
35 35 H 1.09001 * 109.46948 * 59.99934 * 3 2 1
36 36 H 1.08994 * 109.46874 * 299.99662 * 3 2 1
37 37 H 0.97001 * 120.00215 * 179.97438 * 8 7 5
38 38 H 1.08998 * 109.46984 * 147.61212 * 13 4 3
39 39 H 1.08996 * 109.47476 * 27.60763 * 13 4 3
40 40 H 1.09000 * 109.46907 * 58.14607 * 14 13 4
41 41 H 1.08999 * 109.47067 * 298.15195 * 14 13 4
42 42 H 0.96994 * 120.00442 * 359.97438 * 15 14 13
43 43 H 1.09000 * 109.47308 * 60.00008 * 18 16 15
44 44 H 1.08999 * 109.47703 * 299.99961 * 18 16 15
45 45 H 1.08005 * 125.03441 * 0.02562 * 20 19 18
46 46 H 1.08004 * 120.10933 * 359.96868 * 24 23 21
47 47 H 1.09000 * 109.47540 * 270.23783 * 26 25 24
48 48 H 1.08999 * 109.46935 * 30.24257 * 26 25 24
49 49 H 1.09005 * 109.46975 * 150.24233 * 26 25 24
50 50 H 1.08001 * 119.73474 * 179.74109 * 27 25 24
51 51 H 1.08009 * 120.11580 * 180.25596 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 3.5050 1.4425 0.0006
5 6 4.1892 1.4427 1.1868
6 1 5.1033 0.8757 1.2830
7 6 3.7078 2.1718 2.2656
8 7 4.0638 1.8474 3.4905
9 14 2.5547 3.6131 1.9788
10 1 1.1484 3.1582 2.1230
11 1 2.8353 4.6774 2.9756
12 1 2.7636 4.1495 0.6099
13 6 4.2380 1.4424 -1.2678
14 6 4.5452 0.0010 -1.6791
15 7 5.2393 -0.0013 -2.9693
16 6 5.6112 -1.1680 -3.5323
17 8 5.3716 -2.2159 -2.9707
18 6 6.3246 -1.1704 -4.8597
19 6 6.6273 -2.5900 -5.2647
20 6 7.7738 -3.2544 -5.0502
21 7 7.6808 -4.5214 -5.5584
22 1 8.3837 -5.1890 -5.5231
23 6 6.4409 -4.7077 -6.1272
24 6 5.8336 -5.7817 -6.7704
25 6 4.5439 -5.6585 -7.2382
26 6 3.8865 -6.8254 -7.9291
27 6 3.8455 -4.4686 -7.0844
28 6 4.4223 -3.4016 -6.4555
29 6 5.7268 -3.5062 -5.9687
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8899
33 1 1.8933 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8900
35 1 1.6766 1.9564 0.8900
36 1 1.6767 1.9563 -0.8900
37 1 3.7278 2.3571 4.2443
38 1 5.1712 1.9928 -1.1483
39 1 3.6314 1.9185 -2.0381
40 1 3.6137 -0.5582 -1.7666
41 1 5.1792 -0.4648 -0.9246
42 1 5.4305 0.8368 -3.4186
43 1 7.2562 -0.6113 -4.7725
44 1 5.6905 -0.7044 -5.6139
45 1 8.6412 -2.8489 -4.5505
46 1 6.3703 -6.7100 -6.8990
47 1 4.0910 -6.7768 -8.9986
48 1 4.2829 -7.7570 -7.5253
49 1 2.8099 -6.7864 -7.7629
50 1 2.8364 -4.3873 -7.4607
51 1 3.8713 -2.4804 -6.3358
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001267318875.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:10
Heat of formation + Delta-G solvation = 29.760279 kcal
Electronic energy + Delta-G solvation = -29184.987468 eV
Core-core repulsion = 25277.887242 eV
Total energy + Delta-G solvation = -3907.100226 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.36 seconds
Orbital eigenvalues (eV)
-41.40246 -39.21199 -37.46775 -36.75435 -34.37253 -33.24860 -32.54681 -31.80025
-31.38543 -29.95123 -28.77278 -27.23309 -26.07364 -25.58919 -23.49223 -22.88053
-21.09922 -21.03492 -20.72908 -20.36394 -19.24542 -17.90348 -16.92044 -16.62160
-16.40229 -15.65441 -15.36413 -15.33814 -14.92328 -14.60181 -14.39095 -14.20637
-13.97047 -13.84667 -13.59979 -13.37717 -13.17508 -13.03910 -12.85371 -12.63941
-12.52204 -12.29098 -12.19841 -11.98436 -11.60599 -11.47911 -11.35103 -11.32040
-11.14368 -10.90287 -10.76018 -10.69975 -10.29718 -10.12194 -9.78726 -9.70383
-9.45953 -9.41741 -8.60302 -8.51599 -8.20848 -7.69929 -6.88245 -6.00823
-3.43382 1.03724 1.54743 2.51479 2.96938 3.00684 3.30915 3.45678
3.50452 3.58415 3.84996 4.51478 4.58004 4.67208 4.74180 4.85196
4.98454 5.08857 5.12232 5.14918 5.24515 5.37500 5.38025 5.40277
5.44959 5.58516 5.65521 5.67504 5.69988 5.74928 5.79816 5.85773
5.90456 6.03528 6.05070 6.15122 6.19502 6.42900 6.45070 6.51298
6.52695 6.58111 6.62395 6.62647 6.68967 6.72036 6.91261 6.97938
7.08017 7.14034 7.41290 7.84844 8.03903 8.36480 8.58774 8.96491
9.69302 10.08357 11.14419
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.016550 B = 0.002175 C = 0.002025
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1691.480050 B =12873.039023 C =13822.176927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.142 4.142
3 C 0.137 3.863
4 N -0.601 5.601
5 C -0.271 4.271
6 H 0.078 0.922
7 C 0.038 3.962
8 N -0.897 5.897
9 Si 0.880 3.120
10 H -0.285 1.285
11 H -0.302 1.302
12 H -0.270 1.270
13 C 0.141 3.859
14 C 0.097 3.903
15 N -0.730 5.730
16 C 0.506 3.494
17 O -0.532 6.532
18 C -0.066 4.066
19 C -0.148 4.148
20 C 0.061 3.939
21 N -0.595 5.595
22 H 0.414 0.586
23 C 0.099 3.901
24 C -0.134 4.134
25 C -0.070 4.070
26 C -0.110 4.110
27 C -0.147 4.147
28 C -0.063 4.063
29 C -0.093 4.093
30 H 0.046 0.954
31 H 0.049 0.951
32 H 0.045 0.955
33 H 0.053 0.947
34 H 0.068 0.932
35 H 0.054 0.946
36 H 0.037 0.963
37 H 0.263 0.737
38 H 0.059 0.941
39 H 0.041 0.959
40 H 0.061 0.939
41 H 0.066 0.934
42 H 0.395 0.605
43 H 0.098 0.902
44 H 0.097 0.903
45 H 0.169 0.831
46 H 0.117 0.883
47 H 0.068 0.932
48 H 0.063 0.937
49 H 0.066 0.934
50 H 0.120 0.880
51 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.052 -10.431 -24.526 26.958
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.182 4.182
3 C 0.011 3.989
4 N -0.322 5.322
5 C -0.400 4.400
6 H 0.096 0.904
7 C -0.163 4.163
8 N -0.537 5.537
9 Si 0.710 3.290
10 H -0.213 1.213
11 H -0.230 1.230
12 H -0.195 1.195
13 C 0.014 3.986
14 C -0.029 4.029
15 N -0.382 5.382
16 C 0.291 3.709
17 O -0.407 6.407
18 C -0.106 4.106
19 C -0.156 4.156
20 C -0.065 4.065
21 N -0.198 5.198
22 H 0.251 0.749
23 C -0.008 4.008
24 C -0.154 4.154
25 C -0.072 4.072
26 C -0.167 4.167
27 C -0.166 4.166
28 C -0.081 4.081
29 C -0.097 4.097
30 H 0.065 0.935
31 H 0.068 0.932
32 H 0.064 0.936
33 H 0.071 0.929
34 H 0.087 0.913
35 H 0.072 0.928
36 H 0.055 0.945
37 H 0.073 0.927
38 H 0.077 0.923
39 H 0.060 0.940
40 H 0.079 0.921
41 H 0.085 0.915
42 H 0.228 0.772
43 H 0.116 0.884
44 H 0.115 0.885
45 H 0.186 0.814
46 H 0.135 0.865
47 H 0.086 0.914
48 H 0.082 0.918
49 H 0.085 0.915
50 H 0.138 0.862
51 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 3.993 -11.199 -23.864 26.661
hybrid contribution -0.199 0.856 0.021 0.879
sum 3.794 -10.343 -23.842 26.265
Atomic orbital electron populations
1.21744 0.97361 1.00649 1.00948 1.22121 0.93836 1.00102 1.02125
1.21265 0.84146 0.94407 0.99040 1.44011 1.00310 1.86158 1.01745
1.18726 1.09205 1.24984 0.87040 0.90402 1.25444 0.97958 0.97755
0.95139 1.69888 1.46509 1.39518 0.97818 0.86895 0.80298 0.84080
0.77723 1.21332 1.23035 1.19505 1.20980 0.96779 0.92388 0.88467
1.22322 0.96510 1.01159 0.82891 1.46102 1.60323 1.08246 1.23517
1.20623 0.79497 0.83908 0.86911 1.90722 1.54670 1.31453 1.63900
1.19953 1.01682 0.93845 0.95153 1.19549 0.93782 0.95497 1.06725
1.21530 0.99985 0.84282 1.00724 1.41639 1.13391 1.13308 1.51448
0.74908 1.18180 0.86275 0.96245 1.00055 1.19795 0.95394 0.96782
1.03469 1.19505 0.93306 0.95590 0.98750 1.20751 1.00512 0.95562
0.99851 1.20482 1.00160 0.93023 1.02938 1.20237 0.92879 0.98717
0.96300 1.18972 0.94598 0.93408 1.02771 0.93486 0.93169 0.93570
0.92855 0.91346 0.92829 0.94468 0.92681 0.92309 0.94035 0.92068
0.91533 0.77177 0.88375 0.88469 0.81409 0.86543 0.91371 0.91812
0.91476 0.86207 0.86315
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.45 9.91 37.16 0.37 -2.08 16
2 C -0.14 -2.79 6.26 -26.73 -0.17 -2.96 16
3 C 0.14 2.93 4.56 -4.03 -0.02 2.92 16
4 N -0.60 -13.83 2.08 -173.23 -0.36 -14.19 16
5 C -0.27 -7.43 9.92 -15.06 -0.15 -7.58 16
6 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16
7 C 0.04 1.08 5.30 -17.43 -0.09 0.99 16
8 N -0.90 -27.18 13.97 55.49 0.78 -26.41 16
9 Si 0.88 21.98 25.07 -169.99 -4.26 17.72 16
10 H -0.29 -6.96 6.66 56.52 0.38 -6.59 16
11 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16
12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
13 C 0.14 2.61 5.83 -4.04 -0.02 2.59 16
14 C 0.10 1.73 5.99 -4.04 -0.02 1.70 16
15 N -0.73 -10.08 5.56 -60.29 -0.33 -10.42 16
16 C 0.51 7.47 7.82 -10.98 -0.09 7.38 16
17 O -0.53 -10.54 16.03 5.56 0.09 -10.45 16
18 C -0.07 -0.68 6.23 -29.04 -0.18 -0.86 16
19 C -0.15 -1.80 4.81 -102.71 -0.49 -2.29 16
20 C 0.06 0.63 11.73 -16.73 -0.20 0.43 16
21 N -0.60 -5.80 6.07 -10.65 -0.06 -5.86 16
22 H 0.41 2.65 8.96 -40.82 -0.37 2.29 16
23 C 0.10 1.19 7.28 -83.99 -0.61 0.58 16
24 C -0.13 -1.41 9.71 -39.43 -0.38 -1.80 16
25 C -0.07 -0.72 5.88 -104.58 -0.61 -1.34 16
26 C -0.11 -0.79 9.99 36.01 0.36 -0.43 16
27 C -0.15 -1.61 9.62 -39.95 -0.38 -1.99 16
28 C -0.06 -0.78 10.05 -39.65 -0.40 -1.17 16
29 C -0.09 -1.23 6.35 -105.14 -0.67 -1.90 16
30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16
32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
33 H 0.05 1.01 6.38 -51.93 -0.33 0.68 16
34 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16
35 H 0.05 1.27 3.27 -51.93 -0.17 1.10 16
36 H 0.04 0.71 7.88 -51.93 -0.41 0.30 16
37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16
38 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16
39 H 0.04 0.68 7.87 -51.93 -0.41 0.27 16
40 H 0.06 1.19 6.38 -51.93 -0.33 0.86 16
41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16
42 H 0.40 4.05 8.47 -40.82 -0.35 3.70 16
43 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16
44 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16
45 H 0.17 1.23 8.06 -52.48 -0.42 0.80 16
46 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16
47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
48 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16
49 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16
50 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16
51 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16
LS Contribution 414.04 15.07 6.24 6.24
Total: -1.00 -35.66 414.04 -9.96 -45.62
By element:
Atomic # 1 Polarization: 13.84 SS G_CDS: -8.28 Total: 5.56 kcal
Atomic # 6 Polarization: -4.04 SS G_CDS: -3.76 Total: -7.80 kcal
Atomic # 7 Polarization: -56.89 SS G_CDS: 0.01 Total: -56.88 kcal
Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -4.26 Total: 17.72 kcal
Total LS contribution 6.24 Total: 6.24 kcal
Total: -35.66 -9.96 -45.62 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267318875.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.378 kcal
(2) G-P(sol) polarization free energy of solvation -35.661 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.717 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.618 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.760 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.36 seconds