Wall clock time and date at job start Sat Apr 11 2020 07:02:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53008 * 109.47068 * 2 1
4 4 N 1.46506 * 109.46824 * 179.97438 * 3 2 1
5 5 C 1.36933 * 120.00104 * 269.99638 * 4 3 2
6 6 H 1.07995 * 120.00081 * 142.67872 * 5 4 3
7 7 C 1.38820 * 119.99869 * 322.68454 * 5 4 3
8 8 N 1.31618 * 120.00025 * 157.17413 * 7 5 4
9 9 Si 1.86793 * 120.00008 * 337.17562 * 7 5 4
10 10 H 1.48503 * 109.47291 * 95.36233 * 9 7 5
11 11 H 1.48498 * 109.47124 * 215.36261 * 9 7 5
12 12 H 1.48504 * 109.47334 * 335.36092 * 9 7 5
13 13 C 1.46498 * 119.99718 * 90.00306 * 4 3 2
14 14 C 1.53003 * 109.46929 * 267.60726 * 13 4 3
15 15 N 1.46499 * 109.47009 * 178.14871 * 14 13 4
16 16 C 1.34782 * 119.99704 * 180.02562 * 15 14 13
17 17 O 1.21277 * 119.99936 * 359.97438 * 16 15 14
18 18 C 1.50699 * 119.99664 * 179.97438 * 16 15 14
19 19 C 1.50698 * 109.46887 * 179.97438 * 18 16 15
20 20 C 1.34236 * 126.50341 * 264.99887 * 19 18 16
21 21 N 1.36829 * 109.93218 * 180.02562 * 20 19 18
22 22 H 0.97002 * 125.06285 * 180.02562 * 21 20 19
23 23 C 1.37682 * 109.87422 * 0.02562 * 21 20 19
24 24 C 1.39131 * 133.51066 * 180.02562 * 23 21 20
25 25 C 1.37744 * 119.77886 * 179.73807 * 24 23 21
26 26 C 1.50704 * 119.66488 * 180.27075 * 25 24 23
27 27 C 1.38830 * 120.66659 * 0.51807 * 25 24 23
28 28 C 1.36624 * 120.52731 * 359.45493 * 27 25 24
29 29 C 1.39628 * 119.76564 * 0.28310 * 28 27 25
30 30 H 1.08997 * 109.46848 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.47289 * 299.99856 * 1 2 3
32 32 H 1.08994 * 109.47048 * 59.99859 * 1 2 3
33 33 H 1.09001 * 109.47289 * 240.00144 * 2 1 3
34 34 H 1.09002 * 109.47346 * 119.99576 * 2 1 3
35 35 H 1.09001 * 109.46948 * 59.99934 * 3 2 1
36 36 H 1.08994 * 109.46874 * 299.99662 * 3 2 1
37 37 H 0.97001 * 120.00215 * 179.97438 * 8 7 5
38 38 H 1.08998 * 109.46984 * 147.61212 * 13 4 3
39 39 H 1.08996 * 109.47476 * 27.60763 * 13 4 3
40 40 H 1.09000 * 109.46907 * 58.14607 * 14 13 4
41 41 H 1.08999 * 109.47067 * 298.15195 * 14 13 4
42 42 H 0.96994 * 120.00442 * 359.97438 * 15 14 13
43 43 H 1.09000 * 109.47308 * 60.00008 * 18 16 15
44 44 H 1.08999 * 109.47703 * 299.99961 * 18 16 15
45 45 H 1.08005 * 125.03441 * 0.02562 * 20 19 18
46 46 H 1.08004 * 120.10933 * 359.96868 * 24 23 21
47 47 H 1.09000 * 109.47540 * 270.23783 * 26 25 24
48 48 H 1.08999 * 109.46935 * 30.24257 * 26 25 24
49 49 H 1.09005 * 109.46975 * 150.24233 * 26 25 24
50 50 H 1.08001 * 119.73474 * 179.74109 * 27 25 24
51 51 H 1.08009 * 120.11580 * 180.25596 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 3.5050 1.4425 0.0006
5 6 4.1892 1.4427 1.1868
6 1 5.1033 0.8757 1.2830
7 6 3.7078 2.1718 2.2656
8 7 4.0638 1.8474 3.4905
9 14 2.5547 3.6131 1.9788
10 1 1.1484 3.1582 2.1230
11 1 2.8353 4.6774 2.9756
12 1 2.7636 4.1495 0.6099
13 6 4.2380 1.4424 -1.2678
14 6 4.5452 0.0010 -1.6791
15 7 5.2393 -0.0013 -2.9693
16 6 5.6112 -1.1680 -3.5323
17 8 5.3716 -2.2159 -2.9707
18 6 6.3246 -1.1704 -4.8597
19 6 6.6273 -2.5900 -5.2647
20 6 7.7738 -3.2544 -5.0502
21 7 7.6808 -4.5214 -5.5584
22 1 8.3837 -5.1890 -5.5231
23 6 6.4409 -4.7077 -6.1272
24 6 5.8336 -5.7817 -6.7704
25 6 4.5439 -5.6585 -7.2382
26 6 3.8865 -6.8254 -7.9291
27 6 3.8455 -4.4686 -7.0844
28 6 4.4223 -3.4016 -6.4555
29 6 5.7268 -3.5062 -5.9687
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8899
33 1 1.8933 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8900
35 1 1.6766 1.9564 0.8900
36 1 1.6767 1.9563 -0.8900
37 1 3.7278 2.3571 4.2443
38 1 5.1712 1.9928 -1.1483
39 1 3.6314 1.9185 -2.0381
40 1 3.6137 -0.5582 -1.7666
41 1 5.1792 -0.4648 -0.9246
42 1 5.4305 0.8368 -3.4186
43 1 7.2562 -0.6113 -4.7725
44 1 5.6905 -0.7044 -5.6139
45 1 8.6412 -2.8489 -4.5505
46 1 6.3703 -6.7100 -6.8990
47 1 4.0910 -6.7768 -8.9986
48 1 4.2829 -7.7570 -7.5253
49 1 2.8099 -6.7864 -7.7629
50 1 2.8364 -4.3873 -7.4607
51 1 3.8713 -2.4804 -6.3358
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267318875.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:09
Heat of formation + Delta-G solvation = 6.826378 kcal
Electronic energy + Delta-G solvation = -29185.981956 eV
Core-core repulsion = 25277.887242 eV
Total energy + Delta-G solvation = -3908.094714 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.23 seconds
Orbital eigenvalues (eV)
-42.19616 -40.45005 -38.49572 -38.20432 -35.78476 -34.35630 -34.11494 -33.30552
-32.46031 -30.79946 -30.10501 -28.24674 -27.37628 -26.82175 -25.12703 -23.68184
-22.58592 -22.35806 -21.82741 -21.68475 -20.18132 -18.81010 -18.68344 -17.88188
-17.43034 -17.19938 -16.74565 -16.36341 -16.01286 -15.91022 -15.58772 -15.42698
-15.06050 -14.93898 -14.69383 -14.62637 -14.48573 -14.34136 -14.08198 -14.05702
-13.72734 -13.38683 -13.22271 -13.00323 -12.90204 -12.83299 -12.76942 -12.49941
-12.31298 -12.24100 -12.09311 -11.95693 -11.78092 -11.67805 -11.65957 -11.22910
-10.95618 -10.60775 -10.36225 -9.95447 -9.02248 -8.82060 -8.49220 -8.19470
-5.59253 0.22920 0.71701 1.33452 1.43086 1.55046 1.66244 1.81399
2.28947 2.42817 2.45307 2.97730 3.05745 3.48233 3.81170 3.91579
4.00166 4.08367 4.10765 4.20285 4.25607 4.28005 4.37309 4.43158
4.45891 4.55067 4.57056 4.61039 4.64172 4.71867 4.74050 4.83241
4.87523 4.91409 4.93744 4.99507 5.03002 5.09632 5.16840 5.18865
5.25807 5.30361 5.37843 5.52030 5.58423 5.63605 5.71792 5.83394
5.87191 5.94960 6.18249 6.28373 6.73938 6.76406 6.98585 7.45873
7.63017 8.03102 9.00197
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.016550 B = 0.002175 C = 0.002025
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1691.480050 B =12873.039023 C =13822.176927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.136 4.136
3 C 0.130 3.870
4 N -0.613 5.613
5 C -0.258 4.258
6 H 0.034 0.966
7 C -0.022 4.022
8 N -0.949 5.949
9 Si 0.949 3.051
10 H -0.276 1.276
11 H -0.310 1.310
12 H -0.250 1.250
13 C 0.143 3.857
14 C 0.116 3.884
15 N -0.715 5.715
16 C 0.504 3.496
17 O -0.588 6.588
18 C -0.052 4.052
19 C -0.181 4.181
20 C 0.064 3.936
21 N -0.588 5.588
22 H 0.428 0.572
23 C 0.077 3.923
24 C -0.141 4.141
25 C -0.080 4.080
26 C -0.107 4.107
27 C -0.154 4.154
28 C -0.087 4.087
29 C -0.124 4.124
30 H 0.060 0.940
31 H 0.044 0.956
32 H 0.072 0.928
33 H 0.058 0.942
34 H 0.028 0.972
35 H 0.034 0.966
36 H 0.073 0.927
37 H 0.263 0.737
38 H 0.061 0.939
39 H 0.081 0.919
40 H 0.045 0.955
41 H 0.023 0.977
42 H 0.417 0.583
43 H 0.133 0.867
44 H 0.120 0.880
45 H 0.198 0.802
46 H 0.137 0.863
47 H 0.081 0.919
48 H 0.072 0.928
49 H 0.072 0.928
50 H 0.136 0.864
51 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.250 -9.599 -27.762 29.554
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.176 4.176
3 C 0.006 3.994
4 N -0.335 5.335
5 C -0.388 4.388
6 H 0.052 0.948
7 C -0.218 4.218
8 N -0.593 5.593
9 Si 0.777 3.223
10 H -0.203 1.203
11 H -0.239 1.239
12 H -0.174 1.174
13 C 0.017 3.983
14 C -0.011 4.011
15 N -0.368 5.368
16 C 0.292 3.708
17 O -0.468 6.468
18 C -0.092 4.092
19 C -0.189 4.189
20 C -0.063 4.063
21 N -0.192 5.192
22 H 0.268 0.732
23 C -0.030 4.030
24 C -0.162 4.162
25 C -0.081 4.081
26 C -0.164 4.164
27 C -0.173 4.173
28 C -0.106 4.106
29 C -0.128 4.128
30 H 0.079 0.921
31 H 0.063 0.937
32 H 0.091 0.909
33 H 0.076 0.924
34 H 0.047 0.953
35 H 0.052 0.948
36 H 0.092 0.908
37 H 0.072 0.928
38 H 0.079 0.921
39 H 0.099 0.901
40 H 0.064 0.936
41 H 0.041 0.959
42 H 0.254 0.746
43 H 0.151 0.849
44 H 0.138 0.862
45 H 0.215 0.785
46 H 0.155 0.845
47 H 0.100 0.900
48 H 0.091 0.909
49 H 0.091 0.909
50 H 0.154 0.846
51 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 3.203 -10.350 -27.180 29.260
hybrid contribution 0.123 0.440 0.973 1.075
sum 3.326 -9.911 -26.207 28.215
Atomic orbital electron populations
1.21697 0.94410 1.02003 1.01968 1.22005 0.96417 0.98741 1.00404
1.21410 0.82997 0.95388 0.99651 1.44126 1.01279 1.86320 1.01811
1.18541 1.07862 1.23401 0.89007 0.94793 1.26107 1.00642 1.00407
0.94637 1.70032 1.49361 1.41039 0.98871 0.85774 0.78492 0.79890
0.78119 1.20283 1.23912 1.17391 1.21103 0.97185 0.92625 0.87372
1.21792 0.95210 1.00222 0.83849 1.45882 1.59545 1.09467 1.21956
1.21497 0.78508 0.82880 0.87936 1.90701 1.56896 1.33507 1.65687
1.19969 1.02993 0.93868 0.92393 1.19868 0.94433 0.96559 1.08026
1.22064 1.00490 0.84180 0.99545 1.41686 1.13189 1.13613 1.50676
0.73236 1.18495 0.87146 0.96529 1.00813 1.20133 0.95766 0.97284
1.02980 1.19917 0.93386 0.96323 0.98516 1.20789 1.00637 0.94594
1.00344 1.20785 1.00981 0.93052 1.02525 1.20446 0.93192 0.99509
0.97417 1.19368 0.95315 0.94520 1.03622 0.92098 0.93661 0.90950
0.92377 0.95327 0.94845 0.90835 0.92848 0.92106 0.90078 0.93620
0.95865 0.74585 0.84894 0.86233 0.78547 0.84474 0.90013 0.90920
0.90865 0.84579 0.86099
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.35 9.91 71.98 0.71 -3.64 16
2 C -0.14 -5.25 6.26 30.60 0.19 -5.05 16
3 C 0.13 5.33 4.56 86.38 0.39 5.73 16
4 N -0.61 -27.91 2.08 -701.99 -1.46 -29.37 16
5 C -0.26 -14.59 9.92 84.04 0.83 -13.76 16
6 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16
7 C -0.02 -1.25 5.30 84.86 0.45 -0.80 16
8 N -0.95 -59.86 13.97 21.65 0.30 -59.56 16
9 Si 0.95 45.52 25.07 68.60 1.72 47.24 16
10 H -0.28 -12.67 6.66 99.48 0.66 -12.01 16
11 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16
12 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16
13 C 0.14 5.07 5.83 86.38 0.50 5.57 16
14 C 0.12 4.16 5.99 86.38 0.52 4.68 16
15 N -0.71 -18.76 5.56 -463.06 -2.57 -21.33 16
16 C 0.50 14.51 7.82 87.66 0.69 15.19 16
17 O -0.59 -23.87 16.03 -3.02 -0.05 -23.92 16
18 C -0.05 -0.98 6.23 29.10 0.18 -0.80 16
19 C -0.18 -4.24 4.81 -18.63 -0.09 -4.33 16
20 C 0.06 1.24 11.73 83.00 0.97 2.21 16
21 N -0.59 -10.88 6.07 -187.61 -1.14 -12.02 16
22 H 0.43 4.96 8.96 -92.71 -0.83 4.13 16
23 C 0.08 1.82 7.28 39.03 0.28 2.11 16
24 C -0.14 -2.87 9.71 22.37 0.22 -2.65 16
25 C -0.08 -1.57 5.88 -19.84 -0.12 -1.68 16
26 C -0.11 -1.34 9.99 71.24 0.71 -0.63 16
27 C -0.15 -3.31 9.62 22.03 0.21 -3.10 16
28 C -0.09 -2.16 10.05 22.23 0.22 -1.94 16
29 C -0.12 -3.26 6.35 -20.20 -0.13 -3.39 16
30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
31 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16
32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16
33 H 0.06 2.16 6.38 -2.39 -0.02 2.15 16
34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16
35 H 0.03 1.52 3.27 -2.39 -0.01 1.51 16
36 H 0.07 2.50 7.88 -2.39 -0.02 2.48 16
37 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16
38 H 0.06 2.14 8.06 -2.39 -0.02 2.12 16
39 H 0.08 2.29 7.87 -2.39 -0.02 2.28 16
40 H 0.05 1.78 6.38 -2.39 -0.02 1.77 16
41 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16
42 H 0.42 7.31 8.47 -92.71 -0.79 6.52 16
43 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16
44 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16
45 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16
46 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16
47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
48 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16
49 H 0.07 0.83 8.08 -2.38 -0.02 0.81 16
50 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16
51 H 0.12 2.73 8.06 -2.91 -0.02 2.70 16
Total: -1.00 -82.81 414.04 2.84 -79.97
By element:
Atomic # 1 Polarization: 25.99 SS G_CDS: -0.72 Total: 25.27 kcal
Atomic # 6 Polarization: -13.03 SS G_CDS: 6.76 Total: -6.27 kcal
Atomic # 7 Polarization: -117.41 SS G_CDS: -4.87 Total: -122.28 kcal
Atomic # 8 Polarization: -23.87 SS G_CDS: -0.05 Total: -23.92 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 1.72 Total: 47.24 kcal
Total: -82.81 2.84 -79.97 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267318875.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.792 kcal
(2) G-P(sol) polarization free energy of solvation -82.806 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.986 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.826 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds