Wall clock time and date at job start Sat Apr 11 2020 06:59:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.47901 * 110.99545 * 2 1
4 4 C 1.54581 * 102.64562 * 265.58372 * 3 2 1
5 5 C 1.51625 * 102.79581 * 334.21505 * 4 3 2
6 6 C 1.38093 * 131.37502 * 195.78181 * 5 4 3
7 7 C 1.37999 * 120.27870 * 179.67107 * 6 5 4
8 8 C 1.39609 * 119.74260 * 0.30058 * 7 6 5
9 9 C 1.47874 * 120.02487 * 180.12656 * 8 7 6
10 10 O 1.21548 * 120.00037 * 179.97438 * 9 8 7
11 11 N 1.34771 * 119.99732 * 359.97438 * 9 8 7
12 12 C 1.46505 * 120.00033 * 180.02562 * 11 9 8
13 13 H 1.09006 * 109.46605 * 324.99870 * 12 11 9
14 14 C 1.52999 * 109.47318 * 84.99663 * 12 11 9
15 15 C 1.52991 * 109.46965 * 60.00109 * 14 12 11
16 16 C 1.53010 * 109.47170 * 60.00091 * 15 14 12
17 17 C 1.52996 * 109.46911 * 300.00154 * 16 15 14
18 18 H 1.09009 * 109.46975 * 299.99478 * 17 16 15
19 19 N 1.46500 * 109.46952 * 180.02562 * 17 16 15
20 20 C 1.36940 * 120.00143 * 84.99842 * 19 17 16
21 21 H 1.07998 * 120.00011 * 359.97438 * 20 19 17
22 22 C 1.38814 * 119.99687 * 180.02562 * 20 19 17
23 23 N 1.31614 * 119.99762 * 179.97438 * 22 20 19
24 24 Si 1.86805 * 120.00125 * 359.97438 * 22 20 19
25 25 H 1.48505 * 109.46813 * 90.00236 * 24 22 20
26 26 H 1.48503 * 109.46799 * 210.00134 * 24 22 20
27 27 H 1.48496 * 109.46816 * 330.00288 * 24 22 20
28 28 C 1.52993 * 109.47415 * 59.99560 * 17 16 15
29 29 C 1.39268 * 119.95175 * 0.14301 * 8 7 6
30 30 C 1.39090 * 107.91573 * 16.26133 * 5 4 3
31 31 H 1.09002 * 109.46989 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.47358 * 299.94996 * 1 2 3
33 33 H 1.09001 * 109.47623 * 59.95399 * 1 2 3
34 34 H 1.08998 * 110.77946 * 23.87402 * 3 2 1
35 35 H 1.09004 * 110.77410 * 147.11172 * 3 2 1
36 36 H 1.09001 * 110.73366 * 92.76963 * 4 3 2
37 37 H 1.08997 * 110.73997 * 216.08801 * 4 3 2
38 38 H 1.08002 * 119.86311 * 359.95667 * 6 5 4
39 39 H 1.08001 * 120.12811 * 180.32102 * 7 6 5
40 40 H 0.97004 * 120.00453 * 0.02562 * 11 9 8
41 41 H 1.08996 * 109.47129 * 180.02562 * 14 12 11
42 42 H 1.09007 * 109.46999 * 300.00176 * 14 12 11
43 43 H 1.09003 * 109.47143 * 179.97438 * 15 14 12
44 44 H 1.09001 * 109.47697 * 300.00309 * 15 14 12
45 45 H 1.09001 * 109.46633 * 59.99566 * 16 15 14
46 46 H 1.08997 * 109.46895 * 179.97438 * 16 15 14
47 47 H 0.97003 * 119.99561 * 264.99955 * 19 17 16
48 48 H 0.97000 * 119.99957 * 179.97438 * 23 22 20
49 49 H 1.09003 * 109.47229 * 180.02562 * 28 17 16
50 50 H 1.08996 * 109.46969 * 60.00118 * 28 17 16
51 51 H 1.07996 * 119.96489 * 179.97438 * 29 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9989 1.3808 0.0000
4 6 2.2286 1.6551 -1.5038
5 6 2.4327 0.2641 -2.0716
6 6 2.9541 -0.1623 -3.2771
7 6 3.0405 -1.5102 -3.5600
8 6 2.5923 -2.4444 -2.6244
9 6 2.6845 -3.8904 -2.9200
10 8 2.2945 -4.7034 -2.1048
11 7 3.2008 -4.3067 -4.0931
12 6 3.2917 -5.7393 -4.3862
13 1 3.5092 -6.2849 -3.4679
14 6 1.9624 -6.2265 -4.9662
15 6 1.6570 -5.4607 -6.2550
16 6 2.7759 -5.7037 -7.2699
17 6 4.1052 -5.2165 -6.6899
18 1 4.0376 -4.1506 -6.4719
19 7 5.1765 -5.4486 -7.6619
20 6 5.4191 -4.5281 -8.6463
21 1 4.8205 -3.6312 -8.7063
22 6 6.4338 -4.7483 -9.5676
23 7 6.6667 -3.8638 -10.5140
24 14 7.4687 -6.3001 -9.4642
25 1 6.8374 -7.3711 -10.2764
26 1 8.8313 -6.0219 -9.9850
27 1 7.5600 -6.7407 -8.0490
28 6 4.4105 -5.9823 -5.4011
29 6 2.0580 -2.0135 -1.4126
30 6 1.9711 -0.6530 -1.1333
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5131 0.8905
33 1 -0.3634 0.5145 -0.8895
34 1 1.2674 2.0757 0.4124
35 1 2.9364 1.4351 0.5534
36 1 1.3546 2.1325 -1.9469
37 1 3.1198 2.2645 -1.6533
38 1 3.3001 0.5620 -3.9997
39 1 3.4535 -1.8411 -4.5015
40 1 3.5124 -3.6580 -4.7435
41 1 2.0298 -7.2924 -5.1839
42 1 1.1652 -6.0534 -4.2431
43 1 0.7102 -5.8081 -6.6685
44 1 1.5895 -4.3948 -6.0370
45 1 2.8435 -6.7695 -7.4879
46 1 2.5582 -5.1584 -8.1882
47 1 5.7138 -6.2544 -7.6082
48 1 7.3760 -4.0175 -11.1576
49 1 5.3574 -5.6349 -4.9876
50 1 4.4781 -7.0481 -5.6191
51 1 1.7108 -2.7360 -0.6889
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981495353.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:52
Heat of formation + Delta-G solvation = 11.839862 kcal
Electronic energy + Delta-G solvation = -30108.445738 eV
Core-core repulsion = 26200.568424 eV
Total energy + Delta-G solvation = -3907.877314 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 2.73 seconds
Orbital eigenvalues (eV)
-41.18462 -40.09115 -38.17295 -36.68162 -34.65396 -33.15146 -32.67922 -31.39443
-30.45456 -29.99764 -29.02104 -28.26776 -26.23929 -24.16873 -23.44511 -22.59299
-22.15049 -21.32558 -21.01756 -20.50911 -18.95678 -17.97508 -17.56464 -16.48293
-16.20501 -15.97216 -15.59404 -15.35834 -15.01210 -14.61989 -14.52716 -14.28718
-13.93022 -13.85829 -13.75865 -13.62537 -13.43425 -12.91173 -12.81393 -12.69771
-12.61308 -12.37724 -12.22603 -12.02162 -11.94097 -11.79669 -11.53169 -11.28856
-11.27113 -11.02435 -10.92907 -10.44835 -10.28714 -10.11031 -9.93760 -9.79475
-9.73720 -9.61399 -9.13701 -8.97363 -8.86870 -8.26466 -7.31661 -5.81405
-3.17171 0.62163 1.09636 2.72892 3.04896 3.34697 3.37782 3.41247
3.43073 3.65638 4.15588 4.37551 4.55394 4.56742 4.60038 4.75530
4.80684 4.90298 4.98015 5.02221 5.02963 5.07912 5.12273 5.19958
5.28274 5.41617 5.42487 5.46684 5.48979 5.53244 5.57686 5.59650
5.70332 5.75652 5.85404 5.94614 5.99487 6.00730 6.09869 6.11022
6.12914 6.21916 6.28867 6.38589 6.40266 6.52469 6.59880 6.61364
6.82291 6.88905 6.96540 7.55371 7.93879 8.22490 8.37586 9.15933
9.88774 10.08326 11.36790
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.014649 B = 0.002554 C = 0.002301
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1910.993722 B =10961.981850 C =12168.030209
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.496 5.496
3 C 0.049 3.951
4 C -0.113 4.113
5 C -0.117 4.117
6 C -0.094 4.094
7 C -0.092 4.092
8 C -0.116 4.116
9 C 0.560 3.440
10 O -0.542 6.542
11 N -0.712 5.712
12 C 0.152 3.848
13 H 0.086 0.914
14 C -0.128 4.128
15 C -0.116 4.116
16 C -0.137 4.137
17 C 0.185 3.815
18 H 0.049 0.951
19 N -0.749 5.749
20 C -0.244 4.244
21 H 0.090 0.910
22 C 0.005 3.995
23 N -0.933 5.933
24 Si 0.884 3.116
25 H -0.285 1.285
26 H -0.292 1.292
27 H -0.277 1.277
28 C -0.138 4.138
29 C -0.051 4.051
30 C 0.075 3.925
31 H 0.074 0.926
32 H 0.075 0.925
33 H 0.034 0.966
34 H 0.086 0.914
35 H 0.091 0.909
36 H 0.084 0.916
37 H 0.090 0.910
38 H 0.130 0.870
39 H 0.134 0.866
40 H 0.403 0.597
41 H 0.070 0.930
42 H 0.062 0.938
43 H 0.055 0.945
44 H 0.057 0.943
45 H 0.055 0.945
46 H 0.066 0.934
47 H 0.361 0.639
48 H 0.259 0.741
49 H 0.071 0.929
50 H 0.076 0.924
51 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.275 8.259 20.003 24.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 N -0.213 5.213
3 C -0.078 4.078
4 C -0.151 4.151
5 C -0.120 4.120
6 C -0.113 4.113
7 C -0.112 4.112
8 C -0.120 4.120
9 C 0.347 3.653
10 O -0.421 6.421
11 N -0.365 5.365
12 C 0.048 3.952
13 H 0.104 0.896
14 C -0.167 4.167
15 C -0.154 4.154
16 C -0.177 4.177
17 C 0.076 3.924
18 H 0.067 0.933
19 N -0.391 5.391
20 C -0.374 4.374
21 H 0.108 0.892
22 C -0.191 4.191
23 N -0.581 5.581
24 Si 0.714 3.286
25 H -0.211 1.211
26 H -0.218 1.218
27 H -0.203 1.203
28 C -0.177 4.177
29 C -0.072 4.072
30 C -0.020 4.020
31 H 0.093 0.907
32 H 0.094 0.906
33 H 0.052 0.948
34 H 0.104 0.896
35 H 0.109 0.891
36 H 0.102 0.898
37 H 0.109 0.891
38 H 0.148 0.852
39 H 0.152 0.848
40 H 0.241 0.759
41 H 0.089 0.911
42 H 0.081 0.919
43 H 0.074 0.926
44 H 0.075 0.925
45 H 0.074 0.926
46 H 0.085 0.915
47 H 0.194 0.806
48 H 0.070 0.930
49 H 0.089 0.911
50 H 0.095 0.905
51 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -12.410 7.624 20.920 25.491
hybrid contribution 0.770 -0.342 -1.197 1.464
sum -11.640 7.282 19.722 24.031
Atomic orbital electron populations
1.22508 0.85303 1.03093 1.01150 1.60190 1.08663 1.14786 1.37655
1.23193 1.01537 0.87757 0.95315 1.21744 1.03210 0.94151 0.96010
1.21205 1.00752 0.95693 0.94325 1.20377 0.99479 0.95637 0.95757
1.21317 0.98292 0.92616 0.98932 1.19708 1.03499 0.93150 0.95642
1.18168 0.77555 0.87806 0.81762 1.90748 1.48700 1.55219 1.47413
1.46123 1.62960 1.08986 1.18383 1.20955 0.95463 0.80458 0.98355
0.89560 1.21909 0.97025 1.00236 0.97486 1.21503 0.98651 0.99997
0.95238 1.22252 0.95538 1.01446 0.98504 1.20117 0.87983 0.96829
0.87512 0.93344 1.42786 1.38027 1.24314 1.33943 1.19043 1.13921
1.00550 1.03839 0.89243 1.24673 0.99004 0.97840 0.97584 1.69695
1.34300 1.35599 1.18509 0.86558 0.80398 0.84147 0.77454 1.21120
1.21798 1.20289 1.22178 0.97599 1.02004 0.95903 1.20482 0.97559
0.93199 0.95973 1.19401 0.99674 0.93148 0.89800 0.90747 0.90612
0.94756 0.89575 0.89080 0.89770 0.89149 0.85188 0.84817 0.75919
0.91107 0.91899 0.92640 0.92452 0.92601 0.91548 0.80609 0.93049
0.91072 0.90518 0.84513
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 9.28 60.06 0.56 0.74 16
2 N -0.50 -4.60 5.33 -176.88 -0.94 -5.54 16
3 C 0.05 0.33 7.00 -2.44 -0.02 0.31 16
4 C -0.11 -0.79 6.97 -26.60 -0.19 -0.97 16
5 C -0.12 -1.15 6.23 -103.90 -0.65 -1.80 16
6 C -0.09 -0.94 10.01 -39.72 -0.40 -1.33 16
7 C -0.09 -1.01 9.54 -39.16 -0.37 -1.38 16
8 C -0.12 -1.45 5.86 -105.06 -0.62 -2.07 16
9 C 0.56 7.90 7.74 -12.32 -0.10 7.80 16
10 O -0.54 -9.14 15.99 5.32 0.09 -9.05 16
11 N -0.71 -9.24 4.18 -54.74 -0.23 -9.47 16
12 C 0.15 2.03 2.78 -67.93 -0.19 1.84 16
13 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16
14 C -0.13 -1.64 5.60 -26.74 -0.15 -1.79 16
15 C -0.12 -1.55 5.77 -26.73 -0.15 -1.71 16
16 C -0.14 -2.23 5.50 -26.73 -0.15 -2.38 16
17 C 0.19 3.23 2.60 -67.94 -0.18 3.05 16
18 H 0.05 0.85 6.44 -51.92 -0.33 0.52 16
19 N -0.75 -16.67 4.93 -53.43 -0.26 -16.93 16
20 C -0.24 -6.55 10.41 -15.06 -0.16 -6.71 16
21 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16
22 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16
23 N -0.93 -28.63 13.97 55.49 0.78 -27.86 16
24 Si 0.88 21.64 27.74 -169.99 -4.71 16.92 16
25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16
26 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16
27 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16
28 C -0.14 -2.01 5.08 -26.74 -0.14 -2.15 16
29 C -0.05 -0.63 9.62 -38.86 -0.37 -1.01 16
30 C 0.08 0.82 5.58 -83.42 -0.47 0.36 16
31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
32 H 0.08 0.42 8.11 -51.93 -0.42 0.00 16
33 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16
34 H 0.09 0.40 7.76 -51.93 -0.40 0.00 16
35 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16
36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
37 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16
38 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16
39 H 0.13 1.32 6.40 -52.49 -0.34 0.98 16
40 H 0.40 4.94 4.89 -40.82 -0.20 4.74 16
41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
42 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16
43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
44 H 0.06 0.77 7.60 -51.93 -0.39 0.37 16
45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
47 H 0.36 8.00 5.66 -40.82 -0.23 7.77 16
48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
49 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16
50 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
51 H 0.14 1.74 7.63 -52.49 -0.40 1.34 16
LS Contribution 398.15 15.07 6.00 6.00
Total: -1.00 -32.60 398.15 -11.31 -43.91
By element:
Atomic # 1 Polarization: 19.37 SS G_CDS: -8.20 Total: 11.17 kcal
Atomic # 6 Polarization: -5.32 SS G_CDS: -3.82 Total: -9.14 kcal
Atomic # 7 Polarization: -59.15 SS G_CDS: -0.66 Total: -59.81 kcal
Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal
Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.92 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -32.60 -11.31 -43.91 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981495353.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.752 kcal
(2) G-P(sol) polarization free energy of solvation -32.603 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.149 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.309 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.840 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.73 seconds