Wall clock time and date at job start Sat Apr 11 2020 06:59:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.47901 * 110.99545 * 2 1
4 4 C 1.54581 * 102.64562 * 265.58372 * 3 2 1
5 5 C 1.51625 * 102.79581 * 334.21505 * 4 3 2
6 6 C 1.38093 * 131.37502 * 195.78181 * 5 4 3
7 7 C 1.37999 * 120.27870 * 179.67107 * 6 5 4
8 8 C 1.39609 * 119.74260 * 0.30058 * 7 6 5
9 9 C 1.47874 * 120.02487 * 180.12656 * 8 7 6
10 10 O 1.21548 * 120.00037 * 179.97438 * 9 8 7
11 11 N 1.34771 * 119.99732 * 359.97438 * 9 8 7
12 12 C 1.46505 * 120.00033 * 180.02562 * 11 9 8
13 13 H 1.09006 * 109.46605 * 324.99870 * 12 11 9
14 14 C 1.52999 * 109.47318 * 84.99663 * 12 11 9
15 15 C 1.52991 * 109.46965 * 60.00109 * 14 12 11
16 16 C 1.53010 * 109.47170 * 60.00091 * 15 14 12
17 17 C 1.52996 * 109.46911 * 300.00154 * 16 15 14
18 18 H 1.09009 * 109.46975 * 299.99478 * 17 16 15
19 19 N 1.46500 * 109.46952 * 180.02562 * 17 16 15
20 20 C 1.36940 * 120.00143 * 84.99842 * 19 17 16
21 21 H 1.07998 * 120.00011 * 359.97438 * 20 19 17
22 22 C 1.38814 * 119.99687 * 180.02562 * 20 19 17
23 23 N 1.31614 * 119.99762 * 179.97438 * 22 20 19
24 24 Si 1.86805 * 120.00125 * 359.97438 * 22 20 19
25 25 H 1.48505 * 109.46813 * 90.00236 * 24 22 20
26 26 H 1.48503 * 109.46799 * 210.00134 * 24 22 20
27 27 H 1.48496 * 109.46816 * 330.00288 * 24 22 20
28 28 C 1.52993 * 109.47415 * 59.99560 * 17 16 15
29 29 C 1.39268 * 119.95175 * 0.14301 * 8 7 6
30 30 C 1.39090 * 107.91573 * 16.26133 * 5 4 3
31 31 H 1.09002 * 109.46989 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.47358 * 299.94996 * 1 2 3
33 33 H 1.09001 * 109.47623 * 59.95399 * 1 2 3
34 34 H 1.08998 * 110.77946 * 23.87402 * 3 2 1
35 35 H 1.09004 * 110.77410 * 147.11172 * 3 2 1
36 36 H 1.09001 * 110.73366 * 92.76963 * 4 3 2
37 37 H 1.08997 * 110.73997 * 216.08801 * 4 3 2
38 38 H 1.08002 * 119.86311 * 359.95667 * 6 5 4
39 39 H 1.08001 * 120.12811 * 180.32102 * 7 6 5
40 40 H 0.97004 * 120.00453 * 0.02562 * 11 9 8
41 41 H 1.08996 * 109.47129 * 180.02562 * 14 12 11
42 42 H 1.09007 * 109.46999 * 300.00176 * 14 12 11
43 43 H 1.09003 * 109.47143 * 179.97438 * 15 14 12
44 44 H 1.09001 * 109.47697 * 300.00309 * 15 14 12
45 45 H 1.09001 * 109.46633 * 59.99566 * 16 15 14
46 46 H 1.08997 * 109.46895 * 179.97438 * 16 15 14
47 47 H 0.97003 * 119.99561 * 264.99955 * 19 17 16
48 48 H 0.97000 * 119.99957 * 179.97438 * 23 22 20
49 49 H 1.09003 * 109.47229 * 180.02562 * 28 17 16
50 50 H 1.08996 * 109.46969 * 60.00118 * 28 17 16
51 51 H 1.07996 * 119.96489 * 179.97438 * 29 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9989 1.3808 0.0000
4 6 2.2286 1.6551 -1.5038
5 6 2.4327 0.2641 -2.0716
6 6 2.9541 -0.1623 -3.2771
7 6 3.0405 -1.5102 -3.5600
8 6 2.5923 -2.4444 -2.6244
9 6 2.6845 -3.8904 -2.9200
10 8 2.2945 -4.7034 -2.1048
11 7 3.2008 -4.3067 -4.0931
12 6 3.2917 -5.7393 -4.3862
13 1 3.5092 -6.2849 -3.4679
14 6 1.9624 -6.2265 -4.9662
15 6 1.6570 -5.4607 -6.2550
16 6 2.7759 -5.7037 -7.2699
17 6 4.1052 -5.2165 -6.6899
18 1 4.0376 -4.1506 -6.4719
19 7 5.1765 -5.4486 -7.6619
20 6 5.4191 -4.5281 -8.6463
21 1 4.8205 -3.6312 -8.7063
22 6 6.4338 -4.7483 -9.5676
23 7 6.6667 -3.8638 -10.5140
24 14 7.4687 -6.3001 -9.4642
25 1 6.8374 -7.3711 -10.2764
26 1 8.8313 -6.0219 -9.9850
27 1 7.5600 -6.7407 -8.0490
28 6 4.4105 -5.9823 -5.4011
29 6 2.0580 -2.0135 -1.4126
30 6 1.9711 -0.6530 -1.1333
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5131 0.8905
33 1 -0.3634 0.5145 -0.8895
34 1 1.2674 2.0757 0.4124
35 1 2.9364 1.4351 0.5534
36 1 1.3546 2.1325 -1.9469
37 1 3.1198 2.2645 -1.6533
38 1 3.3001 0.5620 -3.9997
39 1 3.4535 -1.8411 -4.5015
40 1 3.5124 -3.6580 -4.7435
41 1 2.0298 -7.2924 -5.1839
42 1 1.1652 -6.0534 -4.2431
43 1 0.7102 -5.8081 -6.6685
44 1 1.5895 -4.3948 -6.0370
45 1 2.8435 -6.7695 -7.4879
46 1 2.5582 -5.1584 -8.1882
47 1 5.7138 -6.2544 -7.6082
48 1 7.3760 -4.0175 -11.1576
49 1 5.3574 -5.6349 -4.9876
50 1 4.4781 -7.0481 -5.6191
51 1 1.7108 -2.7360 -0.6889
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981495353.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:48
Heat of formation + Delta-G solvation = -8.369174 kcal
Electronic energy + Delta-G solvation = -30109.322067 eV
Core-core repulsion = 26200.568424 eV
Total energy + Delta-G solvation = -3908.753643 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 2.69 seconds
Orbital eigenvalues (eV)
-41.98755 -41.14316 -39.37980 -37.53951 -36.27482 -34.51103 -33.44146 -33.20926
-31.44963 -30.82374 -30.20203 -29.53735 -26.86142 -25.44588 -24.90158 -23.40847
-23.32585 -22.47369 -22.01935 -21.53380 -20.29630 -19.52156 -18.80584 -17.30848
-17.09321 -16.87027 -16.66715 -16.45775 -16.37505 -16.02413 -15.58388 -15.37521
-15.05975 -14.97264 -14.74027 -14.65587 -14.60379 -14.24099 -14.02869 -13.76334
-13.48449 -13.30139 -13.13172 -13.07474 -12.98436 -12.95122 -12.85004 -12.67949
-12.39662 -12.12032 -12.01371 -11.96551 -11.81012 -11.63972 -11.53043 -11.06587
-11.04300 -10.87524 -10.53419 -10.14002 -9.85592 -9.27649 -8.99215 -7.99100
-5.31709 -0.25898 0.25886 1.40405 1.42713 1.50009 1.75133 2.06968
2.51155 2.65752 2.76329 3.32722 3.43916 3.49960 3.69378 3.78061
3.85001 3.90620 3.94716 4.06922 4.14756 4.19296 4.21239 4.27561
4.32922 4.43309 4.47521 4.52524 4.56901 4.64891 4.69267 4.72590
4.78470 4.79625 4.89374 4.91312 4.93309 5.05725 5.08172 5.15658
5.20113 5.22309 5.24793 5.33389 5.36552 5.45521 5.49774 5.55287
5.64083 5.81673 5.89277 6.13597 6.25023 6.47606 7.11604 7.13590
7.88270 8.06511 9.22266
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.014649 B = 0.002554 C = 0.002301
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1910.993722 B =10961.981850 C =12168.030209
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.512 5.512
3 C 0.047 3.953
4 C -0.109 4.109
5 C -0.118 4.118
6 C -0.097 4.097
7 C -0.096 4.096
8 C -0.131 4.131
9 C 0.561 3.439
10 O -0.575 6.575
11 N -0.707 5.707
12 C 0.156 3.844
13 H 0.087 0.913
14 C -0.122 4.122
15 C -0.106 4.106
16 C -0.129 4.129
17 C 0.179 3.821
18 H 0.045 0.955
19 N -0.752 5.752
20 C -0.222 4.222
21 H 0.060 0.940
22 C -0.066 4.066
23 N -0.985 5.985
24 Si 0.951 3.049
25 H -0.282 1.282
26 H -0.301 1.301
27 H -0.250 1.250
28 C -0.126 4.126
29 C -0.068 4.068
30 C 0.069 3.931
31 H 0.062 0.938
32 H 0.097 0.903
33 H 0.037 0.963
34 H 0.111 0.889
35 H 0.091 0.909
36 H 0.098 0.902
37 H 0.106 0.894
38 H 0.151 0.849
39 H 0.141 0.859
40 H 0.407 0.593
41 H 0.086 0.914
42 H 0.060 0.940
43 H 0.068 0.932
44 H 0.056 0.944
45 H 0.059 0.941
46 H 0.039 0.961
47 H 0.365 0.635
48 H 0.256 0.744
49 H 0.069 0.931
50 H 0.090 0.910
51 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.741 8.398 21.548 26.404
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.230 5.230
3 C -0.079 4.079
4 C -0.146 4.146
5 C -0.121 4.121
6 C -0.115 4.115
7 C -0.115 4.115
8 C -0.135 4.135
9 C 0.350 3.650
10 O -0.456 6.456
11 N -0.359 5.359
12 C 0.052 3.948
13 H 0.105 0.895
14 C -0.160 4.160
15 C -0.144 4.144
16 C -0.169 4.169
17 C 0.071 3.929
18 H 0.063 0.937
19 N -0.394 5.394
20 C -0.353 4.353
21 H 0.078 0.922
22 C -0.257 4.257
23 N -0.636 5.636
24 Si 0.779 3.221
25 H -0.209 1.209
26 H -0.228 1.228
27 H -0.174 1.174
28 C -0.165 4.165
29 C -0.089 4.089
30 C -0.027 4.027
31 H 0.081 0.919
32 H 0.115 0.885
33 H 0.056 0.944
34 H 0.129 0.871
35 H 0.110 0.890
36 H 0.116 0.884
37 H 0.124 0.876
38 H 0.169 0.831
39 H 0.158 0.842
40 H 0.245 0.755
41 H 0.104 0.896
42 H 0.078 0.922
43 H 0.087 0.913
44 H 0.074 0.926
45 H 0.078 0.922
46 H 0.058 0.942
47 H 0.198 0.802
48 H 0.064 0.936
49 H 0.087 0.913
50 H 0.109 0.891
51 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -12.911 7.754 22.512 27.085
hybrid contribution 0.814 -0.270 -1.605 1.819
sum -12.098 7.484 20.907 25.288
Atomic orbital electron populations
1.22547 0.84275 1.02805 1.02334 1.60199 1.09661 1.16197 1.36923
1.23336 1.02298 0.86813 0.95425 1.21829 1.04490 0.92522 0.95796
1.21626 0.99424 0.97226 0.93841 1.20648 0.98993 0.95535 0.96345
1.21427 0.98228 0.93019 0.98842 1.19609 1.05041 0.92418 0.96392
1.18408 0.76856 0.88350 0.81436 1.90722 1.50301 1.56175 1.48392
1.46091 1.62542 1.09064 1.18179 1.20918 0.95366 0.80617 0.97939
0.89520 1.21862 0.96421 1.00989 0.96717 1.21412 0.98060 1.00219
0.94752 1.22094 0.95687 1.01082 0.98035 1.20351 0.87236 0.97405
0.87884 0.93678 1.42811 1.39325 1.23500 1.33786 1.19008 1.12245
0.99959 1.04053 0.92217 1.25454 1.01067 1.01391 0.97777 1.69873
1.35516 1.38163 1.20012 0.85468 0.77828 0.80047 0.78780 1.20850
1.22784 1.17399 1.22046 0.97908 1.02265 0.94236 1.20456 0.98568
0.93907 0.95927 1.19555 0.99570 0.92801 0.90768 0.91889 0.88485
0.94410 0.87079 0.89022 0.88392 0.87598 0.83146 0.84167 0.75500
0.89583 0.92171 0.91288 0.92554 0.92209 0.94238 0.80205 0.93551
0.91251 0.89145 0.85968
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.35 9.28 127.69 1.19 1.53 16
2 N -0.51 -8.85 5.33 -713.51 -3.80 -12.65 16
3 C 0.05 0.52 7.00 86.65 0.61 1.13 16
4 C -0.11 -1.22 6.97 30.68 0.21 -1.00 16
5 C -0.12 -2.15 6.23 -19.40 -0.12 -2.27 16
6 C -0.10 -1.79 10.01 22.18 0.22 -1.57 16
7 C -0.10 -2.05 9.54 22.54 0.22 -1.84 16
8 C -0.13 -3.30 5.86 -20.15 -0.12 -3.42 16
9 C 0.56 15.89 7.74 86.80 0.67 16.57 16
10 O -0.57 -19.64 15.99 -3.87 -0.06 -19.70 16
11 N -0.71 -17.90 4.18 -445.38 -1.86 -19.76 16
12 C 0.16 3.92 2.78 44.99 0.13 4.04 16
13 H 0.09 2.26 7.58 -2.38 -0.02 2.24 16
14 C -0.12 -2.87 5.60 30.59 0.17 -2.69 16
15 C -0.11 -2.68 5.77 30.59 0.18 -2.50 16
16 C -0.13 -4.04 5.50 30.60 0.17 -3.87 16
17 C 0.18 6.04 2.60 44.99 0.12 6.16 16
18 H 0.05 1.56 6.44 -2.38 -0.02 1.55 16
19 N -0.75 -32.65 4.93 -322.94 -1.59 -34.24 16
20 C -0.22 -12.01 10.41 84.03 0.87 -11.13 16
21 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16
22 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16
23 N -0.98 -61.94 13.97 21.65 0.30 -61.64 16
24 Si 0.95 44.49 27.74 68.60 1.90 46.40 16
25 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16
26 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16
27 H -0.25 -10.41 6.52 99.48 0.65 -9.77 16
28 C -0.13 -3.41 5.08 30.59 0.16 -3.25 16
29 C -0.07 -1.70 9.62 22.74 0.22 -1.48 16
30 C 0.07 1.47 5.58 38.25 0.21 1.68 16
31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
32 H 0.10 0.85 8.11 -2.38 -0.02 0.83 16
33 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16
34 H 0.11 0.67 7.76 -2.39 -0.02 0.65 16
35 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16
36 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16
37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16
38 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16
39 H 0.14 2.70 6.40 -2.91 -0.02 2.68 16
40 H 0.41 9.74 4.89 -92.71 -0.45 9.28 16
41 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16
42 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16
43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
44 H 0.06 1.44 7.60 -2.39 -0.02 1.42 16
45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
46 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
47 H 0.36 15.33 5.66 -92.71 -0.52 14.80 16
48 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16
49 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
50 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16
51 H 0.12 3.32 7.63 -2.91 -0.02 3.30 16
Total: -1.00 -71.65 398.15 0.35 -71.30
By element:
Atomic # 1 Polarization: 37.63 SS G_CDS: -0.10 Total: 37.53 kcal
Atomic # 6 Polarization: -12.80 SS G_CDS: 5.56 Total: -7.24 kcal
Atomic # 7 Polarization: -121.34 SS G_CDS: -6.95 Total: -128.29 kcal
Atomic # 8 Polarization: -19.64 SS G_CDS: -0.06 Total: -19.70 kcal
Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.40 kcal
Total: -71.65 0.35 -71.30 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981495353.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.931 kcal
(2) G-P(sol) polarization free energy of solvation -71.652 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.721 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.301 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.369 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.69 seconds