Wall clock time and date at job start Sat Apr 11 2020 07:01:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08997 * 109.47162 * 2 1
4 4 N 1.46499 * 109.47236 * 120.00539 * 2 1 3
5 5 C 1.34782 * 119.99775 * 275.00373 * 4 2 1
6 6 O 1.21556 * 119.99760 * 359.97438 * 5 4 2
7 7 C 1.47837 * 119.99950 * 180.02562 * 5 4 2
8 8 C 1.40025 * 120.56152 * 358.20150 * 7 5 4
9 9 C 1.38357 * 118.28877 * 180.02562 * 8 7 5
10 10 C 1.38350 * 119.30554 * 0.28312 * 9 8 7
11 11 N 1.31934 * 121.07274 * 359.41866 * 10 9 8
12 12 C 1.31692 * 121.88425 * 0.59374 * 11 10 9
13 13 C 1.50693 * 119.71610 * 179.67758 * 12 11 10
14 14 C 1.53005 * 117.50339 * 350.58951 * 13 12 11
15 15 C 1.53003 * 117.50287 * 281.96386 * 13 12 11
16 16 C 1.53000 * 109.46789 * 240.00236 * 2 1 3
17 17 C 1.53049 * 109.45853 * 180.02562 * 16 2 1
18 18 C 1.53187 * 109.31342 * 178.59652 * 17 16 2
19 19 N 1.46935 * 108.76318 * 54.66122 * 18 17 16
20 20 C 1.36934 * 120.63277 * 126.40393 * 19 18 17
21 21 H 1.07995 * 119.99634 * 331.15632 * 20 19 18
22 22 C 1.38813 * 119.99797 * 151.16266 * 20 19 18
23 23 N 1.31621 * 119.99582 * 156.77296 * 22 20 19
24 24 Si 1.86802 * 120.00067 * 336.76815 * 22 20 19
25 25 H 1.48505 * 109.46798 * 90.74872 * 24 22 20
26 26 H 1.48497 * 109.47171 * 210.74702 * 24 22 20
27 27 H 1.48504 * 109.47004 * 330.75119 * 24 22 20
28 28 C 1.46925 * 118.73275 * 306.38181 * 19 18 17
29 29 C 1.53035 * 109.46254 * 59.97679 * 16 2 1
30 30 H 1.08992 * 109.47482 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47183 * 299.99925 * 1 2 3
32 32 H 1.09003 * 109.46895 * 59.99424 * 1 2 3
33 33 H 0.96998 * 120.00616 * 94.99434 * 4 2 1
34 34 H 1.08001 * 120.85118 * 0.05173 * 8 7 5
35 35 H 1.08001 * 120.34385 * 180.02562 * 9 8 7
36 36 H 1.07988 * 119.46248 * 179.70244 * 10 9 8
37 37 H 1.09008 * 115.55265 * 136.29593 * 13 12 11
38 38 H 1.09006 * 117.49528 * 359.97438 * 14 13 12
39 39 H 1.08992 * 117.50330 * 145.01929 * 14 13 12
40 40 H 1.08997 * 117.50165 * 214.98088 * 15 13 12
41 41 H 1.09004 * 117.49615 * 359.97438 * 15 13 12
42 42 H 1.08996 * 109.46070 * 299.99495 * 16 2 1
43 43 H 1.08997 * 109.49810 * 298.56642 * 17 16 2
44 44 H 1.09007 * 109.49478 * 58.66170 * 17 16 2
45 45 H 1.08990 * 109.60145 * 294.87124 * 18 17 16
46 46 H 1.09004 * 109.70069 * 174.50331 * 18 17 16
47 47 H 0.96999 * 119.99524 * 179.97438 * 23 22 20
48 48 H 1.09007 * 109.58954 * 293.81904 * 28 19 18
49 49 H 1.09008 * 109.70076 * 173.46624 * 28 19 18
50 50 H 1.09001 * 109.49322 * 301.33151 * 29 16 2
51 51 H 1.08996 * 109.49857 * 61.42956 * 29 16 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0184 -0.6907 1.1961
5 6 2.1470 -0.0184 2.3572
6 8 1.8582 1.1611 2.4117
7 6 2.6404 -0.7153 3.5640
8 6 2.9418 -2.0821 3.5238
9 6 3.3997 -2.6869 4.6808
10 6 3.5382 -1.9307 5.8310
11 7 3.2518 -0.6429 5.8379
12 6 2.8128 -0.0222 4.7626
13 6 2.4937 1.4492 4.8273
14 6 2.4871 2.1107 6.2070
15 6 1.1682 1.8568 5.4740
16 6 2.0399 -0.7212 -1.2493
17 6 3.5704 -0.7216 -1.2488
18 6 4.0773 -1.4748 -2.4826
19 7 3.4747 -0.8769 -3.6819
20 6 4.2606 -0.4514 -4.7194
21 1 5.2681 -0.1118 -4.5297
22 6 3.7623 -0.4565 -6.0150
23 7 4.2854 0.3384 -6.9244
24 14 2.3494 -1.5915 -6.4678
25 1 1.0601 -0.8854 -6.2568
26 1 2.4696 -1.9867 -7.8942
27 1 2.3953 -2.8045 -5.6124
28 6 2.0129 -0.7446 -3.7469
29 6 1.5292 0.0001 -2.4986
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 2.2490 -1.6319 1.1526
34 1 2.8203 -2.6494 2.6128
35 1 3.6425 -3.7393 4.6870
36 1 3.8908 -2.4013 6.7368
37 1 2.8468 2.0444 3.9852
38 1 2.7132 1.4815 7.0679
39 1 2.8360 3.1411 6.2727
40 1 0.6496 2.7203 5.0575
41 1 0.5269 1.0607 5.8522
42 1 1.6765 -1.7488 -1.2491
43 1 3.9345 0.3054 -1.2741
44 1 3.9337 -1.2148 -0.3471
45 1 3.7904 -2.5240 -2.4140
46 1 5.1629 -1.3959 -2.5411
47 1 3.9374 0.3346 -7.8298
48 1 1.5575 -1.7344 -3.7814
49 1 1.7340 -0.1829 -4.6385
50 1 0.4394 0.0207 -2.4868
51 1 1.9127 1.0202 -2.5121
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000997202834.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:51
Heat of formation + Delta-G solvation = 45.962781 kcal
Electronic energy + Delta-G solvation = -30353.976307 eV
Core-core repulsion = 26447.578674 eV
Total energy + Delta-G solvation = -3906.397633 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 3.00 seconds
Orbital eigenvalues (eV)
-41.14733 -39.57618 -38.11695 -37.06514 -35.52247 -33.48303 -32.55362 -31.64752
-31.19288 -30.39260 -29.26092 -25.70563 -24.96670 -24.76884 -22.92457 -22.67207
-22.37764 -21.22023 -21.00705 -20.44964 -19.49228 -17.96611 -17.27377 -16.78022
-16.68200 -15.80801 -15.60230 -15.33364 -15.08560 -14.70120 -14.50271 -14.17846
-14.00564 -13.91069 -13.67573 -13.50541 -13.27119 -12.98459 -12.91397 -12.67497
-12.37874 -12.08586 -12.03055 -11.85500 -11.62854 -11.39793 -11.25548 -10.95112
-10.77267 -10.63702 -10.53122 -10.51105 -10.24021 -10.19595 -10.15846 -9.90620
-9.74664 -9.56972 -9.43730 -9.28652 -9.02596 -8.58837 -6.96970 -5.97782
-3.32065 0.32110 0.79011 2.68591 2.96539 3.30719 3.40739 3.46803
3.50248 3.75814 3.89456 4.28037 4.33139 4.41187 4.52224 4.65452
4.77559 4.86377 4.92994 4.93986 4.97217 5.04715 5.09831 5.17366
5.31439 5.38080 5.44084 5.53798 5.54955 5.60518 5.65162 5.69200
5.75332 5.78744 5.83853 5.99873 6.02983 6.05474 6.10461 6.12040
6.18481 6.23249 6.27761 6.37912 6.48115 6.50905 6.63356 6.67753
6.70462 6.95972 7.34916 7.56437 7.96898 8.07361 8.32266 8.94040
9.71195 10.10222 11.18325
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.020003 B = 0.002425 C = 0.002334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1399.469789 B =11543.862733 C =11996.160981
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.146 3.854
3 H 0.090 0.910
4 N -0.715 5.715
5 C 0.562 3.438
6 O -0.523 6.523
7 C -0.181 4.181
8 C -0.041 4.041
9 C -0.186 4.186
10 C 0.125 3.875
11 N -0.486 5.486
12 C 0.218 3.782
13 C -0.106 4.106
14 C -0.169 4.169
15 C -0.152 4.152
16 C -0.086 4.086
17 C -0.127 4.127
18 C 0.148 3.852
19 N -0.605 5.605
20 C -0.261 4.261
21 H 0.083 0.917
22 C 0.026 3.974
23 N -0.904 5.904
24 Si 0.878 3.122
25 H -0.287 1.287
26 H -0.303 1.303
27 H -0.273 1.273
28 C 0.129 3.871
29 C -0.127 4.127
30 H 0.054 0.946
31 H 0.056 0.944
32 H 0.072 0.928
33 H 0.396 0.604
34 H 0.139 0.861
35 H 0.142 0.858
36 H 0.161 0.839
37 H 0.140 0.860
38 H 0.104 0.896
39 H 0.095 0.905
40 H 0.100 0.900
41 H 0.087 0.913
42 H 0.068 0.932
43 H 0.063 0.937
44 H 0.051 0.949
45 H 0.019 0.981
46 H 0.062 0.938
47 H 0.263 0.737
48 H 0.021 0.979
49 H 0.074 0.926
50 H 0.058 0.942
51 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.039 -5.210 25.944 27.142
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.043 3.957
3 H 0.108 0.892
4 N -0.366 5.366
5 C 0.348 3.652
6 O -0.400 6.400
7 C -0.186 4.186
8 C -0.067 4.067
9 C -0.206 4.206
10 C -0.032 4.032
11 N -0.195 5.195
12 C 0.079 3.921
13 C -0.125 4.125
14 C -0.206 4.206
15 C -0.190 4.190
16 C -0.105 4.105
17 C -0.167 4.167
18 C 0.022 3.978
19 N -0.328 5.328
20 C -0.390 4.390
21 H 0.101 0.899
22 C -0.173 4.173
23 N -0.547 5.547
24 Si 0.708 3.292
25 H -0.214 1.214
26 H -0.231 1.231
27 H -0.198 1.198
28 C 0.003 3.997
29 C -0.166 4.166
30 H 0.073 0.927
31 H 0.075 0.925
32 H 0.091 0.909
33 H 0.231 0.769
34 H 0.157 0.843
35 H 0.160 0.840
36 H 0.178 0.822
37 H 0.157 0.843
38 H 0.122 0.878
39 H 0.113 0.887
40 H 0.118 0.882
41 H 0.106 0.894
42 H 0.086 0.914
43 H 0.082 0.918
44 H 0.069 0.931
45 H 0.037 0.963
46 H 0.080 0.920
47 H 0.072 0.928
48 H 0.039 0.961
49 H 0.092 0.908
50 H 0.077 0.923
51 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -6.103 -3.831 26.538 27.499
hybrid contribution -0.742 -1.880 -1.282 2.393
sum -6.846 -5.711 25.256 26.783
Atomic orbital electron populations
1.22213 0.95400 1.01941 1.02571 1.21154 0.93762 0.97716 0.83104
0.89161 1.46033 1.67022 1.13924 1.09671 1.17944 0.77987 0.86581
0.82677 1.90756 1.49636 1.15077 1.84570 1.20804 1.06794 0.94907
0.96074 1.21798 0.92771 0.93218 0.98908 1.22105 1.02701 1.02039
0.93781 1.22991 0.92982 0.89266 0.98000 1.67525 1.12123 1.10503
1.29318 1.20571 0.89630 0.94922 0.86928 1.21078 1.03259 0.89802
0.98354 1.23002 1.00663 1.01381 0.95551 1.22827 0.90284 1.03020
1.02822 1.21342 0.96638 0.99256 0.93254 1.22042 0.94241 1.01878
0.98491 1.20921 0.97244 0.93698 0.85932 1.44349 1.01023 1.70489
1.16984 1.18889 0.98683 1.36668 0.84716 0.89930 1.25314 0.97910
0.98474 0.95652 1.69879 1.44031 1.36800 1.03985 0.86989 0.82450
0.83113 0.76653 1.21432 1.23059 1.19814 1.21294 0.84973 0.96864
0.96529 1.22087 0.99157 1.00475 0.94918 0.92729 0.92457 0.90932
0.76902 0.84293 0.84030 0.82186 0.84296 0.87806 0.88664 0.88208
0.89428 0.91402 0.91780 0.93085 0.96276 0.91991 0.92762 0.96128
0.90831 0.92304 0.91391
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.86 9.13 37.16 0.34 -1.52 16
2 C 0.15 1.81 2.16 -67.93 -0.15 1.67 16
3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16
4 N -0.72 -7.68 4.32 -54.75 -0.24 -7.92 16
5 C 0.56 6.90 7.72 -12.33 -0.10 6.80 16
6 O -0.52 -7.80 13.19 5.32 0.07 -7.73 16
7 C -0.18 -1.94 5.89 -104.82 -0.62 -2.56 16
8 C -0.04 -0.32 9.65 -38.87 -0.37 -0.70 16
9 C -0.19 -1.24 10.10 -39.50 -0.40 -1.64 16
10 C 0.12 0.96 11.17 -17.47 -0.20 0.77 16
11 N -0.49 -5.13 9.33 -9.15 -0.09 -5.21 16
12 C 0.22 2.51 6.48 -82.18 -0.53 1.98 16
13 C -0.11 -1.23 4.36 -91.77 -0.40 -1.63 16
14 C -0.17 -1.63 10.02 -26.73 -0.27 -1.90 16
15 C -0.15 -1.55 10.23 -26.73 -0.27 -1.82 16
16 C -0.09 -1.19 1.79 -90.58 -0.16 -1.35 16
17 C -0.13 -1.94 5.22 -26.61 -0.14 -2.08 16
18 C 0.15 2.78 6.52 -3.71 -0.02 2.75 16
19 N -0.60 -13.98 2.73 -172.32 -0.47 -14.46 16
20 C -0.26 -7.23 9.99 -15.06 -0.15 -7.38 16
21 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16
22 C 0.03 0.74 5.16 -17.43 -0.09 0.65 16
23 N -0.90 -27.58 13.97 55.49 0.78 -26.81 16
24 Si 0.88 22.05 24.49 -169.99 -4.16 17.89 16
25 H -0.29 -6.91 6.57 56.52 0.37 -6.54 16
26 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16
27 H -0.27 -6.76 7.01 56.52 0.40 -6.36 16
28 C 0.13 2.71 4.24 -3.71 -0.02 2.69 16
29 C -0.13 -2.09 5.04 -26.61 -0.13 -2.22 16
30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.07 0.82 6.40 -51.93 -0.33 0.48 16
33 H 0.40 3.35 6.50 -40.82 -0.27 3.08 16
34 H 0.14 0.76 6.52 -52.49 -0.34 0.41 16
35 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16
36 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16
37 H 0.14 1.81 6.51 -51.92 -0.34 1.47 16
38 H 0.10 1.01 7.58 -51.93 -0.39 0.62 16
39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
40 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16
41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
44 H 0.05 0.65 7.41 -51.92 -0.38 0.26 16
45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16
46 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16
47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
48 H 0.02 0.43 7.32 -51.93 -0.38 0.05 16
49 H 0.07 1.72 4.82 -51.92 -0.25 1.47 16
50 H 0.06 0.84 6.36 -51.93 -0.33 0.51 16
51 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
LS Contribution 394.27 15.07 5.94 5.94
Total: -1.00 -32.73 394.27 -9.91 -42.65
By element:
Atomic # 1 Polarization: 11.20 SS G_CDS: -8.07 Total: 3.14 kcal
Atomic # 6 Polarization: -3.81 SS G_CDS: -3.68 Total: -7.49 kcal
Atomic # 7 Polarization: -54.38 SS G_CDS: -0.02 Total: -54.39 kcal
Atomic # 8 Polarization: -7.80 SS G_CDS: 0.07 Total: -7.73 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -4.16 Total: 17.89 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -32.73 -9.91 -42.65 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997202834.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.611 kcal
(2) G-P(sol) polarization free energy of solvation -32.734 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.877 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.963 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.00 seconds