Wall clock time and date at job start Sat Apr 11 2020 07:01:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08997 * 109.47162 * 2 1
4 4 N 1.46499 * 109.47236 * 120.00539 * 2 1 3
5 5 C 1.34782 * 119.99775 * 275.00373 * 4 2 1
6 6 O 1.21556 * 119.99760 * 359.97438 * 5 4 2
7 7 C 1.47837 * 119.99950 * 180.02562 * 5 4 2
8 8 C 1.40025 * 120.56152 * 358.20150 * 7 5 4
9 9 C 1.38357 * 118.28877 * 180.02562 * 8 7 5
10 10 C 1.38350 * 119.30554 * 0.28312 * 9 8 7
11 11 N 1.31934 * 121.07274 * 359.41866 * 10 9 8
12 12 C 1.31692 * 121.88425 * 0.59374 * 11 10 9
13 13 C 1.50693 * 119.71610 * 179.67758 * 12 11 10
14 14 C 1.53005 * 117.50339 * 350.58951 * 13 12 11
15 15 C 1.53003 * 117.50287 * 281.96386 * 13 12 11
16 16 C 1.53000 * 109.46789 * 240.00236 * 2 1 3
17 17 C 1.53049 * 109.45853 * 180.02562 * 16 2 1
18 18 C 1.53187 * 109.31342 * 178.59652 * 17 16 2
19 19 N 1.46935 * 108.76318 * 54.66122 * 18 17 16
20 20 C 1.36934 * 120.63277 * 126.40393 * 19 18 17
21 21 H 1.07995 * 119.99634 * 331.15632 * 20 19 18
22 22 C 1.38813 * 119.99797 * 151.16266 * 20 19 18
23 23 N 1.31621 * 119.99582 * 156.77296 * 22 20 19
24 24 Si 1.86802 * 120.00067 * 336.76815 * 22 20 19
25 25 H 1.48505 * 109.46798 * 90.74872 * 24 22 20
26 26 H 1.48497 * 109.47171 * 210.74702 * 24 22 20
27 27 H 1.48504 * 109.47004 * 330.75119 * 24 22 20
28 28 C 1.46925 * 118.73275 * 306.38181 * 19 18 17
29 29 C 1.53035 * 109.46254 * 59.97679 * 16 2 1
30 30 H 1.08992 * 109.47482 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47183 * 299.99925 * 1 2 3
32 32 H 1.09003 * 109.46895 * 59.99424 * 1 2 3
33 33 H 0.96998 * 120.00616 * 94.99434 * 4 2 1
34 34 H 1.08001 * 120.85118 * 0.05173 * 8 7 5
35 35 H 1.08001 * 120.34385 * 180.02562 * 9 8 7
36 36 H 1.07988 * 119.46248 * 179.70244 * 10 9 8
37 37 H 1.09008 * 115.55265 * 136.29593 * 13 12 11
38 38 H 1.09006 * 117.49528 * 359.97438 * 14 13 12
39 39 H 1.08992 * 117.50330 * 145.01929 * 14 13 12
40 40 H 1.08997 * 117.50165 * 214.98088 * 15 13 12
41 41 H 1.09004 * 117.49615 * 359.97438 * 15 13 12
42 42 H 1.08996 * 109.46070 * 299.99495 * 16 2 1
43 43 H 1.08997 * 109.49810 * 298.56642 * 17 16 2
44 44 H 1.09007 * 109.49478 * 58.66170 * 17 16 2
45 45 H 1.08990 * 109.60145 * 294.87124 * 18 17 16
46 46 H 1.09004 * 109.70069 * 174.50331 * 18 17 16
47 47 H 0.96999 * 119.99524 * 179.97438 * 23 22 20
48 48 H 1.09007 * 109.58954 * 293.81904 * 28 19 18
49 49 H 1.09008 * 109.70076 * 173.46624 * 28 19 18
50 50 H 1.09001 * 109.49322 * 301.33151 * 29 16 2
51 51 H 1.08996 * 109.49857 * 61.42956 * 29 16 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0184 -0.6907 1.1961
5 6 2.1470 -0.0184 2.3572
6 8 1.8582 1.1611 2.4117
7 6 2.6404 -0.7153 3.5640
8 6 2.9418 -2.0821 3.5238
9 6 3.3997 -2.6869 4.6808
10 6 3.5382 -1.9307 5.8310
11 7 3.2518 -0.6429 5.8379
12 6 2.8128 -0.0222 4.7626
13 6 2.4937 1.4492 4.8273
14 6 2.4871 2.1107 6.2070
15 6 1.1682 1.8568 5.4740
16 6 2.0399 -0.7212 -1.2493
17 6 3.5704 -0.7216 -1.2488
18 6 4.0773 -1.4748 -2.4826
19 7 3.4747 -0.8769 -3.6819
20 6 4.2606 -0.4514 -4.7194
21 1 5.2681 -0.1118 -4.5297
22 6 3.7623 -0.4565 -6.0150
23 7 4.2854 0.3384 -6.9244
24 14 2.3494 -1.5915 -6.4678
25 1 1.0601 -0.8854 -6.2568
26 1 2.4696 -1.9867 -7.8942
27 1 2.3953 -2.8045 -5.6124
28 6 2.0129 -0.7446 -3.7469
29 6 1.5292 0.0001 -2.4986
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 2.2490 -1.6319 1.1526
34 1 2.8203 -2.6494 2.6128
35 1 3.6425 -3.7393 4.6870
36 1 3.8908 -2.4013 6.7368
37 1 2.8468 2.0444 3.9852
38 1 2.7132 1.4815 7.0679
39 1 2.8360 3.1411 6.2727
40 1 0.6496 2.7203 5.0575
41 1 0.5269 1.0607 5.8522
42 1 1.6765 -1.7488 -1.2491
43 1 3.9345 0.3054 -1.2741
44 1 3.9337 -1.2148 -0.3471
45 1 3.7904 -2.5240 -2.4140
46 1 5.1629 -1.3959 -2.5411
47 1 3.9374 0.3346 -7.8298
48 1 1.5575 -1.7344 -3.7814
49 1 1.7340 -0.1829 -4.6385
50 1 0.4394 0.0207 -2.4868
51 1 1.9127 1.0202 -2.5121
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000997202834.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:46
Heat of formation + Delta-G solvation = 25.810539 kcal
Electronic energy + Delta-G solvation = -30354.850174 eV
Core-core repulsion = 26447.578674 eV
Total energy + Delta-G solvation = -3907.271499 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 4.77 seconds
Orbital eigenvalues (eV)
-41.89858 -40.54210 -39.37799 -37.84804 -36.83237 -34.67857 -33.87005 -32.77147
-32.11242 -31.94194 -30.46304 -27.18283 -25.95378 -25.42114 -24.33516 -24.13291
-23.21128 -22.26435 -21.95144 -21.38101 -20.89090 -18.98056 -18.56446 -17.95154
-17.54989 -17.11502 -16.63910 -16.24308 -16.08735 -15.90056 -15.59064 -15.32635
-15.28995 -15.15909 -14.80069 -14.51673 -14.46860 -14.33157 -14.02709 -13.72495
-13.55552 -13.51287 -13.39789 -12.87185 -12.72135 -12.53977 -12.41266 -12.38905
-12.21552 -12.04275 -11.71060 -11.66008 -11.53841 -11.45529 -11.24923 -11.17843
-10.92204 -10.91637 -10.64303 -10.33237 -10.12727 -9.81373 -8.88770 -8.17414
-5.47432 -0.35413 0.18861 1.31723 1.42134 1.52155 1.87464 2.08381
2.43306 2.68928 3.04020 3.04802 3.19815 3.39561 3.56652 3.65117
3.76592 3.85252 3.89966 3.94721 4.03379 4.14002 4.20375 4.24868
4.36769 4.39490 4.44780 4.50554 4.53958 4.58946 4.68592 4.71990
4.75778 4.82538 4.88358 4.96992 5.00583 5.02687 5.03948 5.05759
5.09730 5.11632 5.20507 5.22298 5.29130 5.31394 5.38380 5.49241
5.61416 5.64613 5.89275 6.13531 6.52640 6.91578 6.95211 7.21544
7.65292 8.05768 9.02947
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.020003 B = 0.002425 C = 0.002334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1399.469789 B =11543.862733 C =11996.160981
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.157 3.843
3 H 0.063 0.937
4 N -0.704 5.704
5 C 0.560 3.440
6 O -0.559 6.559
7 C -0.200 4.200
8 C -0.039 4.039
9 C -0.175 4.175
10 C 0.119 3.881
11 N -0.508 5.508
12 C 0.196 3.804
13 C -0.121 4.121
14 C -0.157 4.157
15 C -0.151 4.151
16 C -0.075 4.075
17 C -0.117 4.117
18 C 0.143 3.857
19 N -0.621 5.621
20 C -0.252 4.252
21 H 0.044 0.956
22 C -0.035 4.035
23 N -0.957 5.957
24 Si 0.947 3.053
25 H -0.270 1.270
26 H -0.312 1.312
27 H -0.260 1.260
28 C 0.122 3.878
29 C -0.120 4.120
30 H 0.074 0.926
31 H 0.046 0.954
32 H 0.073 0.927
33 H 0.411 0.589
34 H 0.168 0.832
35 H 0.180 0.820
36 H 0.191 0.809
37 H 0.116 0.884
38 H 0.104 0.896
39 H 0.105 0.895
40 H 0.100 0.900
41 H 0.087 0.913
42 H 0.094 0.906
43 H 0.037 0.963
44 H 0.085 0.915
45 H 0.043 0.957
46 H 0.047 0.953
47 H 0.261 0.739
48 H 0.038 0.962
49 H 0.045 0.955
50 H 0.088 0.912
51 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.672 -8.700 28.326 30.609
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.053 3.947
3 H 0.081 0.919
4 N -0.356 5.356
5 C 0.347 3.653
6 O -0.438 6.438
7 C -0.206 4.206
8 C -0.065 4.065
9 C -0.194 4.194
10 C -0.038 4.038
11 N -0.217 5.217
12 C 0.059 3.941
13 C -0.140 4.140
14 C -0.194 4.194
15 C -0.188 4.188
16 C -0.094 4.094
17 C -0.156 4.156
18 C 0.018 3.982
19 N -0.346 5.346
20 C -0.382 4.382
21 H 0.061 0.939
22 C -0.230 4.230
23 N -0.603 5.603
24 Si 0.775 3.225
25 H -0.196 1.196
26 H -0.241 1.241
27 H -0.184 1.184
28 C -0.002 4.002
29 C -0.159 4.159
30 H 0.093 0.907
31 H 0.065 0.935
32 H 0.092 0.908
33 H 0.249 0.751
34 H 0.185 0.815
35 H 0.197 0.803
36 H 0.208 0.792
37 H 0.134 0.866
38 H 0.123 0.877
39 H 0.123 0.877
40 H 0.118 0.882
41 H 0.106 0.894
42 H 0.112 0.888
43 H 0.056 0.944
44 H 0.103 0.897
45 H 0.061 0.939
46 H 0.066 0.934
47 H 0.070 0.930
48 H 0.056 0.944
49 H 0.063 0.937
50 H 0.107 0.893
51 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -7.752 -7.362 28.970 30.880
hybrid contribution -0.112 -0.796 -1.910 2.073
sum -7.865 -8.158 27.060 29.337
Atomic orbital electron populations
1.22156 0.94178 1.03057 1.02161 1.20857 0.94546 0.96252 0.83085
0.91924 1.45838 1.66646 1.14475 1.08667 1.18251 0.77405 0.86241
0.83381 1.90746 1.51177 1.16732 1.85164 1.20734 1.08465 0.96321
0.95035 1.22159 0.91737 0.91946 1.00612 1.22524 1.00691 1.03596
0.92573 1.23635 0.91872 0.88447 0.99813 1.67514 1.12899 1.12118
1.29154 1.20566 0.90897 0.94849 0.87829 1.20979 1.04137 0.90584
0.98304 1.23014 0.99954 1.01716 0.94685 1.22816 0.90242 1.02976
1.02792 1.21235 0.95281 1.00380 0.92473 1.21911 0.95438 1.00117
0.98085 1.21117 0.96545 0.95093 0.85438 1.44495 1.01877 1.71188
1.17002 1.18816 0.97755 1.35289 0.86290 0.93862 1.25974 1.01473
0.99943 0.95624 1.70020 1.46862 1.38976 1.04404 0.85878 0.79881
0.81114 0.75669 1.19645 1.24072 1.18392 1.21383 0.83613 0.97740
0.97502 1.21978 1.00902 0.98895 0.94168 0.90748 0.93464 0.90822
0.75140 0.81507 0.80303 0.79183 0.86644 0.87737 0.87702 0.88208
0.89409 0.88762 0.94447 0.89696 0.93879 0.93431 0.92993 0.94412
0.93686 0.89344 0.93567
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.16 9.13 71.98 0.66 -2.50 16
2 C 0.16 3.55 2.16 44.99 0.10 3.65 16
3 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16
4 N -0.70 -13.26 4.32 -445.41 -1.92 -15.18 16
5 C 0.56 13.19 7.72 86.78 0.67 13.86 16
6 O -0.56 -17.04 13.19 -3.89 -0.05 -17.09 16
7 C -0.20 -4.00 5.89 -19.99 -0.12 -4.12 16
8 C -0.04 -0.47 9.65 22.73 0.22 -0.25 16
9 C -0.17 -1.55 10.10 22.32 0.23 -1.33 16
10 C 0.12 1.46 11.17 84.70 0.95 2.41 16
11 N -0.51 -9.97 9.33 -182.86 -1.71 -11.68 16
12 C 0.20 4.42 6.48 42.89 0.28 4.70 16
13 C -0.12 -2.89 4.36 -11.54 -0.05 -2.94 16
14 C -0.16 -3.05 10.02 30.60 0.31 -2.74 16
15 C -0.15 -3.14 10.23 30.60 0.31 -2.82 16
16 C -0.07 -1.83 1.79 -10.77 -0.02 -1.85 16
17 C -0.12 -3.30 5.22 30.67 0.16 -3.14 16
18 C 0.14 5.12 6.52 86.36 0.56 5.68 16
19 N -0.62 -28.37 2.73 -699.08 -1.91 -30.28 16
20 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16
21 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16
22 C -0.04 -2.06 5.16 84.86 0.44 -1.63 16
23 N -0.96 -60.63 13.97 21.65 0.30 -60.32 16
24 Si 0.95 45.80 24.49 68.60 1.68 47.48 16
25 H -0.27 -12.22 6.57 99.48 0.65 -11.57 16
26 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16
27 H -0.26 -11.86 7.01 99.48 0.70 -11.16 16
28 C 0.12 4.90 4.24 86.36 0.37 5.26 16
29 C -0.12 -3.71 5.04 30.67 0.15 -3.55 16
30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
32 H 0.07 1.46 6.40 -2.39 -0.02 1.44 16
33 H 0.41 5.15 6.50 -92.71 -0.60 4.54 16
34 H 0.17 0.95 6.52 -2.91 -0.02 0.93 16
35 H 0.18 0.26 8.06 -2.91 -0.02 0.23 16
36 H 0.19 1.00 8.06 -2.92 -0.02 0.97 16
37 H 0.12 3.24 6.51 -2.38 -0.02 3.23 16
38 H 0.10 2.01 7.58 -2.38 -0.02 1.99 16
39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16
40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16
41 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16
42 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16
43 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16
44 H 0.08 1.85 7.41 -2.38 -0.02 1.83 16
45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16
46 H 0.05 1.81 7.93 -2.38 -0.02 1.79 16
47 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16
48 H 0.04 1.40 7.32 -2.38 -0.02 1.39 16
49 H 0.04 2.05 4.82 -2.38 -0.01 2.04 16
50 H 0.09 2.23 6.36 -2.39 -0.02 2.21 16
51 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
Total: -1.00 -76.18 394.27 2.71 -73.47
By element:
Atomic # 1 Polarization: 18.14 SS G_CDS: 0.27 Total: 18.41 kcal
Atomic # 6 Polarization: -10.86 SS G_CDS: 6.05 Total: -4.81 kcal
Atomic # 7 Polarization: -112.23 SS G_CDS: -5.24 Total: -117.47 kcal
Atomic # 8 Polarization: -17.04 SS G_CDS: -0.05 Total: -17.09 kcal
Atomic # 14 Polarization: 45.80 SS G_CDS: 1.68 Total: 47.48 kcal
Total: -76.18 2.71 -73.47 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997202834.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.281 kcal
(2) G-P(sol) polarization free energy of solvation -76.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.098 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.470 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.811 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.77 seconds