Wall clock time and date at job start Sat Apr 11 2020 07:01:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46499 * 109.47147 * 2 1
4 4 C 1.36940 * 119.99920 * 85.04089 * 3 2 1
5 5 H 1.07999 * 120.00275 * 33.36945 * 4 3 2
6 6 C 1.38814 * 119.99597 * 213.64499 * 4 3 2
7 7 N 1.31616 * 120.00223 * 13.46795 * 6 4 3
8 8 Si 1.86801 * 119.99779 * 193.47178 * 6 4 3
9 9 H 1.48505 * 109.47207 * 359.97438 * 8 6 4
10 10 H 1.48501 * 109.47450 * 119.99928 * 8 6 4
11 11 H 1.48500 * 109.47263 * 240.00206 * 8 6 4
12 12 C 1.46497 * 120.00033 * 265.04302 * 3 2 1
13 13 H 1.09001 * 109.47345 * 180.83789 * 12 3 2
14 14 C 1.52994 * 109.47172 * 60.83512 * 12 3 2
15 15 C 1.53004 * 109.47180 * 300.83560 * 12 3 2
16 16 N 1.46502 * 109.47049 * 305.00309 * 15 12 3
17 17 C 1.34779 * 120.00016 * 179.97438 * 16 15 12
18 18 O 1.21541 * 119.99768 * 359.97438 * 17 16 15
19 19 C 1.47866 * 119.99594 * 180.02562 * 17 16 15
20 20 C 1.39607 * 120.11292 * 359.71979 * 19 17 16
21 21 C 1.37990 * 120.00310 * 179.69970 * 20 19 17
22 22 C 1.38247 * 120.22578 * 0.60399 * 21 20 19
23 23 C 1.38978 * 120.21826 * 359.67494 * 22 21 20
24 24 N 1.39713 * 120.00127 * 180.02562 * 23 22 21
25 25 C 1.48223 * 111.00234 * 120.04682 * 24 23 22
26 26 C 1.51113 * 105.36377 * 144.89766 * 25 24 23
27 27 C 1.30964 * 109.45546 * 343.02647 * 26 25 24
28 28 C 1.48222 * 111.00039 * 233.68702 * 24 23 22
29 29 C 1.38677 * 119.99428 * 0.02562 * 23 22 21
30 30 H 1.08999 * 109.47436 * 180.02562 * 1 2 3
31 31 H 1.09008 * 109.47518 * 299.99595 * 1 2 3
32 32 H 1.09000 * 109.47277 * 59.99945 * 1 2 3
33 33 H 1.08995 * 109.47252 * 239.99885 * 2 1 3
34 34 H 1.09000 * 109.47277 * 120.00055 * 2 1 3
35 35 H 0.97002 * 119.99869 * 180.02562 * 7 6 4
36 36 H 1.09005 * 109.47590 * 300.00044 * 14 12 3
37 37 H 1.08998 * 109.47212 * 60.00319 * 14 12 3
38 38 H 1.09008 * 109.47449 * 179.97438 * 14 12 3
39 39 H 1.09000 * 109.46577 * 64.99492 * 15 12 3
40 40 H 1.08990 * 109.47593 * 185.00023 * 15 12 3
41 41 H 0.97003 * 120.00092 * 359.97438 * 16 15 12
42 42 H 1.07999 * 119.99684 * 0.02562 * 20 19 17
43 43 H 1.07997 * 119.88391 * 180.32180 * 21 20 19
44 44 H 1.08004 * 119.88661 * 179.70152 * 22 21 20
45 45 H 1.09005 * 110.27039 * 263.87644 * 25 24 23
46 46 H 1.08997 * 110.26549 * 25.92880 * 25 24 23
47 47 H 1.08000 * 125.27569 * 163.04455 * 26 25 24
48 48 H 1.08009 * 125.27321 * 179.97438 * 27 26 25
49 49 H 1.09002 * 110.26477 * 334.07223 * 28 24 23
50 50 H 1.08999 * 110.26737 * 96.12593 * 28 24 23
51 51 H 1.07999 * 120.11134 * 180.02562 * 29 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1499 2.0609 1.1815
5 1 2.4276 1.5316 2.0810
6 6 1.9206 3.4293 1.2242
7 7 1.3272 4.0290 0.2139
8 14 2.4544 4.4197 2.7154
9 1 3.0933 3.5168 3.7064
10 1 3.4258 5.4616 2.2959
11 1 1.2679 5.0678 3.3298
12 6 2.3658 2.0353 -1.2640
13 1 2.7209 3.0463 -1.0643
14 6 1.1294 2.0972 -2.1630
15 6 3.4669 1.2373 -1.9653
16 7 4.6061 1.0759 -1.0584
17 6 5.7000 0.4010 -1.4640
18 8 5.7410 -0.0741 -2.5820
19 6 6.8495 0.2377 -0.5485
20 6 6.8067 0.7866 0.7344
21 6 7.8782 0.6275 1.5892
22 6 9.0017 -0.0639 1.1756
23 6 9.0567 -0.6092 -0.1015
24 7 10.1941 -1.3076 -0.5146
25 6 9.8577 -2.7056 -0.8741
26 6 10.7688 -3.0524 -2.0288
27 6 11.2568 -1.9522 -2.5450
28 6 10.7208 -0.7597 -1.7871
29 6 7.9825 -0.4602 -0.9658
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3634 0.5138 0.8901
32 1 -0.3634 0.5138 -0.8900
33 1 1.8933 -0.5138 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 1.1674 4.9853 0.2436
36 1 0.7743 1.0861 -2.3627
37 1 0.3450 2.6657 -1.6634
38 1 1.3878 2.5843 -3.1033
39 1 3.0828 0.2561 -2.2443
40 1 3.7877 1.7699 -2.8604
41 1 4.5732 1.4548 -0.1661
42 1 5.9327 1.3312 1.0598
43 1 7.8409 1.0485 2.5830
44 1 9.8392 -0.1810 1.8474
45 1 10.0482 -3.3689 -0.0303
46 1 8.8145 -2.7757 -1.1822
47 1 10.9839 -4.0525 -2.3749
48 1 11.9373 -1.9045 -3.3824
49 1 9.9206 -0.2817 -2.3523
50 1 11.5216 -0.0473 -1.5888
51 1 8.0230 -0.8835 -1.9586
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001155514249.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:09
Heat of formation + Delta-G solvation = 52.331471 kcal
Electronic energy + Delta-G solvation = -30441.194530 eV
Core-core repulsion = 26535.073065 eV
Total energy + Delta-G solvation = -3906.121466 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-40.78242 -39.39543 -37.73626 -36.84051 -33.90922 -33.01609 -31.91017 -31.35189
-30.59395 -28.67543 -28.63685 -28.35643 -25.80719 -24.05336 -23.54132 -23.11633
-21.63338 -21.19074 -19.77486 -19.65033 -19.34524 -17.99338 -16.97848 -16.50084
-16.09802 -15.79524 -15.32056 -14.95901 -14.70739 -14.52358 -14.19441 -14.11216
-13.90261 -13.63108 -13.27415 -13.13086 -13.00134 -12.72622 -12.52332 -12.41738
-12.04921 -11.94742 -11.85422 -11.59972 -11.55759 -11.44581 -11.34299 -11.29485
-11.05466 -10.88492 -10.50753 -10.29670 -10.01293 -9.98283 -9.61876 -9.54419
-9.51746 -9.02325 -8.81379 -8.62158 -8.59079 -8.40967 -6.70907 -5.91115
-3.41394 0.89848 1.17152 1.88179 3.04975 3.27309 3.36745 3.37833
3.58845 3.69765 3.90358 4.38057 4.40174 4.55814 4.83556 4.88770
5.08557 5.17101 5.21184 5.22275 5.26171 5.27365 5.32428 5.36172
5.48041 5.51018 5.67307 5.79880 5.90940 6.05895 6.09457 6.13853
6.16015 6.24656 6.28666 6.33775 6.35328 6.43651 6.49337 6.53933
6.54177 6.61962 6.67777 6.71032 6.76210 6.96522 7.03326 7.14428
7.26165 7.49120 7.58064 7.72622 8.09393 8.39994 8.65786 9.12804
9.73356 10.30523 11.15417
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.014134 B = 0.002913 C = 0.002627
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1980.627061 B = 9610.404537 C =10654.744206
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.142 3.858
3 N -0.583 5.583
4 C -0.262 4.262
5 H 0.065 0.935
6 C 0.011 3.989
7 N -0.892 5.892
8 Si 0.896 3.104
9 H -0.277 1.277
10 H -0.289 1.289
11 H -0.290 1.290
12 C 0.176 3.824
13 H 0.104 0.896
14 C -0.143 4.143
15 C 0.100 3.900
16 N -0.694 5.694
17 C 0.547 3.453
18 O -0.558 6.558
19 C -0.116 4.116
20 C -0.082 4.082
21 C -0.119 4.119
22 C -0.072 4.072
23 C 0.059 3.941
24 N -0.466 5.466
25 C 0.052 3.948
26 C -0.168 4.168
27 C -0.167 4.167
28 C 0.050 3.950
29 C -0.094 4.094
30 H 0.027 0.973
31 H 0.052 0.948
32 H 0.050 0.950
33 H 0.036 0.964
34 H 0.036 0.964
35 H 0.254 0.746
36 H 0.030 0.970
37 H 0.079 0.921
38 H 0.030 0.970
39 H 0.054 0.946
40 H 0.055 0.945
41 H 0.411 0.589
42 H 0.136 0.864
43 H 0.133 0.867
44 H 0.132 0.868
45 H 0.090 0.910
46 H 0.066 0.934
47 H 0.137 0.863
48 H 0.137 0.863
49 H 0.068 0.932
50 H 0.090 0.910
51 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.239 -8.897 -1.618 17.720
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.016 3.984
3 N -0.305 5.305
4 C -0.391 4.391
5 H 0.083 0.917
6 C -0.189 4.189
7 N -0.535 5.535
8 Si 0.726 3.274
9 H -0.202 1.202
10 H -0.215 1.215
11 H -0.217 1.217
12 C 0.069 3.931
13 H 0.122 0.878
14 C -0.202 4.202
15 C -0.025 4.025
16 N -0.345 5.345
17 C 0.333 3.667
18 O -0.439 6.439
19 C -0.120 4.120
20 C -0.101 4.101
21 C -0.138 4.138
22 C -0.091 4.091
23 C -0.035 4.035
24 N -0.187 5.187
25 C -0.073 4.073
26 C -0.186 4.186
27 C -0.186 4.186
28 C -0.076 4.076
29 C -0.114 4.114
30 H 0.046 0.954
31 H 0.071 0.929
32 H 0.069 0.931
33 H 0.054 0.946
34 H 0.054 0.946
35 H 0.064 0.936
36 H 0.049 0.951
37 H 0.098 0.902
38 H 0.049 0.951
39 H 0.072 0.928
40 H 0.073 0.927
41 H 0.249 0.751
42 H 0.154 0.846
43 H 0.151 0.849
44 H 0.150 0.850
45 H 0.108 0.892
46 H 0.084 0.916
47 H 0.155 0.845
48 H 0.155 0.845
49 H 0.086 0.914
50 H 0.108 0.892
51 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 15.571 -8.999 -1.948 18.090
hybrid contribution -0.616 0.754 0.477 1.085
sum 14.955 -8.245 -1.471 17.140
Atomic orbital electron populations
1.22392 0.99758 0.98323 1.02118 1.20794 0.91931 0.87645 0.98020
1.43957 1.74055 1.09802 1.02644 1.19181 1.41144 0.90498 0.88315
0.91718 1.25196 0.98147 0.98390 0.97191 1.69967 1.42632 1.09653
1.31234 0.86328 0.78082 0.80250 0.82725 1.20152 1.21531 1.21706
1.20525 0.90402 0.97134 0.85037 0.87844 1.22105 1.00676 0.99444
0.97983 1.22182 0.87127 1.00782 0.92419 1.45896 1.15344 1.54066
1.19157 1.18274 0.82823 0.78969 0.86649 1.90709 1.82117 1.50124
1.20919 1.19972 0.95335 1.01599 0.95058 1.21574 0.98993 0.97074
0.92480 1.21101 0.93102 0.99448 1.00148 1.21111 0.97999 0.95474
0.94512 1.18896 0.90239 0.99592 0.94822 1.63316 1.25163 1.01940
1.28257 1.22233 0.98316 0.89673 0.97113 1.23564 0.98306 0.99142
0.97598 1.23565 1.00406 0.94481 1.00126 1.22260 0.99987 0.96943
0.88361 1.21690 0.92340 0.97317 1.00092 0.95411 0.92907 0.93115
0.94607 0.94560 0.93577 0.95065 0.90243 0.95093 0.92803 0.92683
0.75124 0.84602 0.84862 0.85048 0.89200 0.91564 0.84482 0.84484
0.91423 0.89203 0.85037
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.20 10.01 37.16 0.37 -2.83 16
2 C 0.14 2.84 5.67 -4.04 -0.02 2.82 16
3 N -0.58 -12.78 1.84 -165.67 -0.31 -13.08 16
4 C -0.26 -6.29 9.33 -15.06 -0.14 -6.43 16
5 H 0.07 1.57 7.87 -52.49 -0.41 1.15 16
6 C 0.01 0.27 4.95 -17.43 -0.09 0.18 16
7 N -0.89 -23.11 10.33 55.49 0.57 -22.53 16
8 Si 0.90 19.79 29.58 -169.99 -5.03 14.76 16
9 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16
10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16
11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
12 C 0.18 3.72 1.92 -67.93 -0.13 3.59 16
13 H 0.10 2.48 5.97 -51.93 -0.31 2.17 16
14 C -0.14 -2.90 8.11 37.15 0.30 -2.60 16
15 C 0.10 1.93 4.92 -4.04 -0.02 1.91 16
16 N -0.69 -12.74 5.34 -61.24 -0.33 -13.07 16
17 C 0.55 10.00 7.77 -12.32 -0.10 9.90 16
18 O -0.56 -11.69 16.34 5.33 0.09 -11.60 16
19 C -0.12 -1.79 5.87 -104.99 -0.62 -2.41 16
20 C -0.08 -1.12 9.54 -39.16 -0.37 -1.50 16
21 C -0.12 -1.37 10.02 -39.67 -0.40 -1.77 16
22 C -0.07 -0.82 9.96 -39.30 -0.39 -1.21 16
23 C 0.06 0.73 4.91 -83.83 -0.41 0.32 16
24 N -0.47 -5.26 5.58 -171.21 -0.96 -6.21 16
25 C 0.05 0.54 6.47 -4.04 -0.03 0.51 16
26 C -0.17 -1.46 10.95 -35.81 -0.39 -1.85 16
27 C -0.17 -1.46 10.95 -35.81 -0.39 -1.85 16
28 C 0.05 0.52 6.44 -4.04 -0.03 0.49 16
29 C -0.09 -1.33 7.23 -38.97 -0.28 -1.61 16
30 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16
31 H 0.05 1.11 8.14 -51.92 -0.42 0.68 16
32 H 0.05 1.00 5.98 -51.93 -0.31 0.69 16
33 H 0.04 0.69 6.49 -51.93 -0.34 0.35 16
34 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16
35 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16
36 H 0.03 0.59 6.52 -51.93 -0.34 0.25 16
37 H 0.08 1.83 7.34 -51.93 -0.38 1.45 16
38 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16
39 H 0.05 1.06 6.84 -51.93 -0.36 0.71 16
40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16
41 H 0.41 7.50 5.97 -40.82 -0.24 7.25 16
42 H 0.14 1.85 6.40 -52.49 -0.34 1.51 16
43 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16
44 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16
45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
46 H 0.07 0.74 6.73 -51.93 -0.35 0.39 16
47 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16
48 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16
49 H 0.07 0.76 6.31 -51.93 -0.33 0.44 16
50 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16
51 H 0.13 1.95 6.62 -52.49 -0.35 1.61 16
LS Contribution 401.84 15.07 6.06 6.06
Total: -1.00 -27.67 401.84 -10.86 -38.53
By element:
Atomic # 1 Polarization: 19.32 SS G_CDS: -7.83 Total: 11.49 kcal
Atomic # 6 Polarization: -1.21 SS G_CDS: -3.13 Total: -4.34 kcal
Atomic # 7 Polarization: -53.88 SS G_CDS: -1.01 Total: -54.89 kcal
Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal
Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -27.67 -10.86 -38.53 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001155514249.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.861 kcal
(2) G-P(sol) polarization free energy of solvation -27.668 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.193 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.331 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds