Wall clock time and date at job start Sat Apr 11 2020 07:01:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46499 * 109.47147 * 2 1
4 4 C 1.36940 * 119.99920 * 85.04089 * 3 2 1
5 5 H 1.07999 * 120.00275 * 33.36945 * 4 3 2
6 6 C 1.38814 * 119.99597 * 213.64499 * 4 3 2
7 7 N 1.31616 * 120.00223 * 13.46795 * 6 4 3
8 8 Si 1.86801 * 119.99779 * 193.47178 * 6 4 3
9 9 H 1.48505 * 109.47207 * 359.97438 * 8 6 4
10 10 H 1.48501 * 109.47450 * 119.99928 * 8 6 4
11 11 H 1.48500 * 109.47263 * 240.00206 * 8 6 4
12 12 C 1.46497 * 120.00033 * 265.04302 * 3 2 1
13 13 H 1.09001 * 109.47345 * 180.83789 * 12 3 2
14 14 C 1.52994 * 109.47172 * 60.83512 * 12 3 2
15 15 C 1.53004 * 109.47180 * 300.83560 * 12 3 2
16 16 N 1.46502 * 109.47049 * 305.00309 * 15 12 3
17 17 C 1.34779 * 120.00016 * 179.97438 * 16 15 12
18 18 O 1.21541 * 119.99768 * 359.97438 * 17 16 15
19 19 C 1.47866 * 119.99594 * 180.02562 * 17 16 15
20 20 C 1.39607 * 120.11292 * 359.71979 * 19 17 16
21 21 C 1.37990 * 120.00310 * 179.69970 * 20 19 17
22 22 C 1.38247 * 120.22578 * 0.60399 * 21 20 19
23 23 C 1.38978 * 120.21826 * 359.67494 * 22 21 20
24 24 N 1.39713 * 120.00127 * 180.02562 * 23 22 21
25 25 C 1.48223 * 111.00234 * 120.04682 * 24 23 22
26 26 C 1.51113 * 105.36377 * 144.89766 * 25 24 23
27 27 C 1.30964 * 109.45546 * 343.02647 * 26 25 24
28 28 C 1.48222 * 111.00039 * 233.68702 * 24 23 22
29 29 C 1.38677 * 119.99428 * 0.02562 * 23 22 21
30 30 H 1.08999 * 109.47436 * 180.02562 * 1 2 3
31 31 H 1.09008 * 109.47518 * 299.99595 * 1 2 3
32 32 H 1.09000 * 109.47277 * 59.99945 * 1 2 3
33 33 H 1.08995 * 109.47252 * 239.99885 * 2 1 3
34 34 H 1.09000 * 109.47277 * 120.00055 * 2 1 3
35 35 H 0.97002 * 119.99869 * 180.02562 * 7 6 4
36 36 H 1.09005 * 109.47590 * 300.00044 * 14 12 3
37 37 H 1.08998 * 109.47212 * 60.00319 * 14 12 3
38 38 H 1.09008 * 109.47449 * 179.97438 * 14 12 3
39 39 H 1.09000 * 109.46577 * 64.99492 * 15 12 3
40 40 H 1.08990 * 109.47593 * 185.00023 * 15 12 3
41 41 H 0.97003 * 120.00092 * 359.97438 * 16 15 12
42 42 H 1.07999 * 119.99684 * 0.02562 * 20 19 17
43 43 H 1.07997 * 119.88391 * 180.32180 * 21 20 19
44 44 H 1.08004 * 119.88661 * 179.70152 * 22 21 20
45 45 H 1.09005 * 110.27039 * 263.87644 * 25 24 23
46 46 H 1.08997 * 110.26549 * 25.92880 * 25 24 23
47 47 H 1.08000 * 125.27569 * 163.04455 * 26 25 24
48 48 H 1.08009 * 125.27321 * 179.97438 * 27 26 25
49 49 H 1.09002 * 110.26477 * 334.07223 * 28 24 23
50 50 H 1.08999 * 110.26737 * 96.12593 * 28 24 23
51 51 H 1.07999 * 120.11134 * 180.02562 * 29 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1499 2.0609 1.1815
5 1 2.4276 1.5316 2.0810
6 6 1.9206 3.4293 1.2242
7 7 1.3272 4.0290 0.2139
8 14 2.4544 4.4197 2.7154
9 1 3.0933 3.5168 3.7064
10 1 3.4258 5.4616 2.2959
11 1 1.2679 5.0678 3.3298
12 6 2.3658 2.0353 -1.2640
13 1 2.7209 3.0463 -1.0643
14 6 1.1294 2.0972 -2.1630
15 6 3.4669 1.2373 -1.9653
16 7 4.6061 1.0759 -1.0584
17 6 5.7000 0.4010 -1.4640
18 8 5.7410 -0.0741 -2.5820
19 6 6.8495 0.2377 -0.5485
20 6 6.8067 0.7866 0.7344
21 6 7.8782 0.6275 1.5892
22 6 9.0017 -0.0639 1.1756
23 6 9.0567 -0.6092 -0.1015
24 7 10.1941 -1.3076 -0.5146
25 6 9.8577 -2.7056 -0.8741
26 6 10.7688 -3.0524 -2.0288
27 6 11.2568 -1.9522 -2.5450
28 6 10.7208 -0.7597 -1.7871
29 6 7.9825 -0.4602 -0.9658
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3634 0.5138 0.8901
32 1 -0.3634 0.5138 -0.8900
33 1 1.8933 -0.5138 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 1.1674 4.9853 0.2436
36 1 0.7743 1.0861 -2.3627
37 1 0.3450 2.6657 -1.6634
38 1 1.3878 2.5843 -3.1033
39 1 3.0828 0.2561 -2.2443
40 1 3.7877 1.7699 -2.8604
41 1 4.5732 1.4548 -0.1661
42 1 5.9327 1.3312 1.0598
43 1 7.8409 1.0485 2.5830
44 1 9.8392 -0.1810 1.8474
45 1 10.0482 -3.3689 -0.0303
46 1 8.8145 -2.7757 -1.1822
47 1 10.9839 -4.0525 -2.3749
48 1 11.9373 -1.9045 -3.3824
49 1 9.9206 -0.2817 -2.3523
50 1 11.5216 -0.0473 -1.5888
51 1 8.0230 -0.8835 -1.9586
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001155514249.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:08
Heat of formation + Delta-G solvation = 38.030248 kcal
Electronic energy + Delta-G solvation = -30441.814678 eV
Core-core repulsion = 26535.073065 eV
Total energy + Delta-G solvation = -3906.741613 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.80 seconds
Orbital eigenvalues (eV)
-41.76449 -40.68208 -38.90961 -38.39971 -35.45695 -33.99756 -33.69201 -32.65315
-31.96000 -30.11781 -29.60344 -29.43227 -27.29426 -25.84172 -24.44597 -24.39041
-23.28780 -22.15977 -21.14508 -20.94552 -20.34511 -19.27452 -18.61429 -17.51582
-17.29035 -16.97410 -16.62541 -16.50901 -16.33081 -15.77801 -15.54051 -15.36635
-15.04214 -14.79856 -14.69840 -14.39972 -14.11834 -13.96526 -13.85006 -13.64734
-13.29374 -13.22732 -13.11333 -12.99691 -12.90137 -12.88236 -12.80491 -12.64545
-12.35936 -12.27310 -12.19337 -12.02916 -11.76231 -11.29010 -11.27411 -11.13392
-10.66178 -10.46455 -10.18246 -9.91044 -9.75475 -9.44724 -8.52695 -7.79766
-5.31112 -0.20269 0.16858 1.20891 1.50298 1.56097 1.62645 1.80514
2.25013 2.56215 2.74655 2.78493 3.36536 3.60834 3.64312 3.71641
3.83909 3.88124 4.02395 4.16609 4.25190 4.29502 4.44013 4.45056
4.49267 4.50302 4.52551 4.58249 4.67577 4.70720 4.79961 4.84136
4.88325 4.90668 4.95073 5.01179 5.08072 5.16312 5.23163 5.27848
5.33654 5.34976 5.36178 5.40460 5.46657 5.60831 5.67118 5.75259
5.76906 5.86143 5.89539 6.20207 6.51868 6.62185 7.18661 7.26463
7.92948 8.45772 9.24659
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.014134 B = 0.002913 C = 0.002627
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1980.627061 B = 9610.404537 C =10654.744206
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.142 3.858
3 N -0.590 5.590
4 C -0.259 4.259
5 H 0.065 0.935
6 C -0.032 4.032
7 N -0.916 5.916
8 Si 0.952 3.048
9 H -0.264 1.264
10 H -0.293 1.293
11 H -0.303 1.303
12 C 0.184 3.816
13 H 0.075 0.925
14 C -0.132 4.132
15 C 0.112 3.888
16 N -0.693 5.693
17 C 0.546 3.454
18 O -0.591 6.591
19 C -0.137 4.137
20 C -0.088 4.088
21 C -0.110 4.110
22 C -0.062 4.062
23 C 0.060 3.940
24 N -0.468 5.468
25 C 0.047 3.953
26 C -0.170 4.170
27 C -0.170 4.170
28 C 0.045 3.955
29 C -0.098 4.098
30 H 0.057 0.943
31 H 0.030 0.970
32 H 0.042 0.958
33 H 0.044 0.956
34 H 0.039 0.961
35 H 0.247 0.753
36 H 0.042 0.958
37 H 0.050 0.950
38 H 0.044 0.956
39 H 0.052 0.948
40 H 0.055 0.945
41 H 0.412 0.588
42 H 0.133 0.867
43 H 0.164 0.836
44 H 0.158 0.842
45 H 0.100 0.900
46 H 0.051 0.949
47 H 0.161 0.839
48 H 0.160 0.840
49 H 0.052 0.948
50 H 0.099 0.901
51 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.195 -10.083 -0.446 19.938
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.016 3.984
3 N -0.312 5.312
4 C -0.389 4.389
5 H 0.082 0.918
6 C -0.230 4.230
7 N -0.560 5.560
8 Si 0.781 3.219
9 H -0.188 1.188
10 H -0.220 1.220
11 H -0.231 1.231
12 C 0.076 3.924
13 H 0.093 0.907
14 C -0.192 4.192
15 C -0.014 4.014
16 N -0.343 5.343
17 C 0.335 3.665
18 O -0.474 6.474
19 C -0.140 4.140
20 C -0.107 4.107
21 C -0.128 4.128
22 C -0.081 4.081
23 C -0.034 4.034
24 N -0.189 5.189
25 C -0.079 4.079
26 C -0.188 4.188
27 C -0.189 4.189
28 C -0.081 4.081
29 C -0.119 4.119
30 H 0.075 0.925
31 H 0.049 0.951
32 H 0.061 0.939
33 H 0.063 0.937
34 H 0.057 0.943
35 H 0.057 0.943
36 H 0.061 0.939
37 H 0.069 0.931
38 H 0.063 0.937
39 H 0.070 0.930
40 H 0.073 0.927
41 H 0.250 0.750
42 H 0.151 0.849
43 H 0.181 0.819
44 H 0.175 0.825
45 H 0.118 0.882
46 H 0.069 0.931
47 H 0.178 0.822
48 H 0.178 0.822
49 H 0.070 0.930
50 H 0.117 0.883
51 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 17.536 -10.206 -0.762 20.304
hybrid contribution -1.178 1.062 0.125 1.591
sum 16.358 -9.144 -0.638 18.751
Atomic orbital electron populations
1.22262 0.99003 0.99760 1.00560 1.20859 0.92445 0.86534 0.98560
1.44052 1.74399 1.10378 1.02374 1.19346 1.39982 0.90655 0.88910
0.91769 1.25744 0.98754 0.99295 0.99176 1.70109 1.44016 1.09220
1.32668 0.85451 0.76975 0.78920 0.80516 1.18766 1.21962 1.23100
1.20349 0.91073 0.95849 0.85083 0.90682 1.21953 0.99418 0.99716
0.98087 1.21943 0.86948 1.00169 0.92329 1.45854 1.15274 1.54210
1.18979 1.18714 0.83253 0.77959 0.86620 1.90678 1.82783 1.51502
1.22450 1.19796 0.94801 1.03857 0.95570 1.21617 0.99845 0.97149
0.92064 1.21412 0.92017 0.98490 1.00879 1.21441 0.98553 0.93995
0.94133 1.19058 0.89960 0.99393 0.95028 1.63420 1.24290 1.02387
1.28780 1.22312 0.97921 0.89356 0.98293 1.23765 0.97724 1.00344
0.96952 1.23759 1.00840 0.93624 1.00637 1.22334 0.99751 0.97917
0.88126 1.21614 0.92803 0.97598 0.99929 0.92453 0.95098 0.93929
0.93741 0.94262 0.94344 0.93927 0.93113 0.93674 0.93006 0.92682
0.75022 0.84880 0.81861 0.82468 0.88179 0.93136 0.82173 0.82228
0.93030 0.88322 0.86543
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.86 10.01 71.98 0.72 -5.14 16
2 C 0.14 5.53 5.67 86.38 0.49 6.02 16
3 N -0.59 -25.85 1.84 -678.06 -1.25 -27.10 16
4 C -0.26 -12.41 9.33 84.03 0.78 -11.62 16
5 H 0.06 3.06 7.87 -2.91 -0.02 3.04 16
6 C -0.03 -1.61 4.95 84.86 0.42 -1.19 16
7 N -0.92 -48.36 10.33 21.65 0.22 -48.14 16
8 Si 0.95 40.80 29.58 68.60 2.03 42.83 16
9 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16
10 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16
11 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16
12 C 0.18 7.83 1.92 44.99 0.09 7.92 16
13 H 0.08 3.69 5.97 -2.39 -0.01 3.67 16
14 C -0.13 -5.41 8.11 71.98 0.58 -4.82 16
15 C 0.11 4.34 4.92 86.38 0.42 4.77 16
16 N -0.69 -25.75 5.34 -465.96 -2.49 -28.24 16
17 C 0.55 20.38 7.77 86.79 0.67 21.06 16
18 O -0.59 -25.45 16.34 -3.84 -0.06 -25.51 16
19 C -0.14 -4.24 5.87 -20.11 -0.12 -4.35 16
20 C -0.09 -2.31 9.54 22.54 0.21 -2.09 16
21 C -0.11 -2.23 10.02 22.21 0.22 -2.01 16
22 C -0.06 -1.25 9.96 22.45 0.22 -1.02 16
23 C 0.06 1.42 4.91 38.17 0.19 1.60 16
24 N -0.47 -9.89 5.58 -695.59 -3.88 -13.77 16
25 C 0.05 0.90 6.47 85.43 0.55 1.46 16
26 C -0.17 -2.65 10.95 25.81 0.28 -2.37 16
27 C -0.17 -2.68 10.95 25.81 0.28 -2.40 16
28 C 0.04 0.87 6.44 85.43 0.55 1.42 16
29 C -0.10 -2.81 7.23 22.67 0.16 -2.65 16
30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16
31 H 0.03 1.26 8.14 -2.38 -0.02 1.25 16
32 H 0.04 1.64 5.98 -2.39 -0.01 1.63 16
33 H 0.04 1.66 6.49 -2.39 -0.02 1.64 16
34 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16
35 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16
36 H 0.04 1.60 6.52 -2.38 -0.02 1.59 16
37 H 0.05 2.37 7.34 -2.39 -0.02 2.35 16
38 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16
39 H 0.05 2.03 6.84 -2.39 -0.02 2.02 16
40 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16
41 H 0.41 15.15 5.97 -92.71 -0.55 14.60 16
42 H 0.13 3.53 6.40 -2.91 -0.02 3.51 16
43 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16
44 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16
45 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16
46 H 0.05 1.14 6.73 -2.39 -0.02 1.12 16
47 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16
48 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16
49 H 0.05 1.18 6.31 -2.39 -0.02 1.16 16
50 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16
51 H 0.12 3.63 6.62 -2.91 -0.02 3.61 16
Total: -1.00 -59.98 401.84 1.70 -58.28
By element:
Atomic # 1 Polarization: 36.69 SS G_CDS: 0.38 Total: 37.07 kcal
Atomic # 6 Polarization: -2.17 SS G_CDS: 6.75 Total: 4.57 kcal
Atomic # 7 Polarization: -109.85 SS G_CDS: -7.40 Total: -117.25 kcal
Atomic # 8 Polarization: -25.45 SS G_CDS: -0.06 Total: -25.51 kcal
Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal
Total: -59.98 1.70 -58.28 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001155514249.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.314 kcal
(2) G-P(sol) polarization free energy of solvation -59.982 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.332 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.284 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.030 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.80 seconds