Wall clock time and date at job start Sat Apr 11 2020 07:01:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09008 * 109.46333 * 2 1
4 4 C 1.52992 * 109.47278 * 119.99359 * 2 1 3
5 5 C 1.50702 * 109.47489 * 295.00306 * 4 2 1
6 6 O 1.21277 * 119.99947 * 0.02562 * 5 4 2
7 7 N 1.34776 * 120.00278 * 179.97438 * 5 4 2
8 8 C 1.46498 * 120.00238 * 179.97438 * 7 5 4
9 9 C 1.52997 * 109.47047 * 180.02562 * 8 7 5
10 10 C 1.50712 * 109.46805 * 180.02562 * 9 8 7
11 11 C 1.29454 * 117.69203 * 95.00070 * 10 9 8
12 12 C 1.50323 * 123.64590 * 181.13493 * 11 10 9
13 13 N 1.47102 * 109.11127 * 348.54347 * 12 11 10
14 14 C 1.36940 * 121.51360 * 223.15765 * 13 12 11
15 15 H 1.08004 * 119.99962 * 156.19051 * 14 13 12
16 16 C 1.38811 * 119.99874 * 336.18990 * 14 13 12
17 17 N 1.31620 * 119.99972 * 344.47015 * 16 14 13
18 18 Si 1.86793 * 120.00126 * 164.47761 * 16 14 13
19 19 H 1.48510 * 109.47011 * 359.97438 * 18 16 14
20 20 H 1.48503 * 109.47588 * 119.99663 * 18 16 14
21 21 H 1.48502 * 109.47132 * 240.00287 * 18 16 14
22 22 C 1.47346 * 117.11188 * 43.34401 * 13 12 11
23 23 C 1.49973 * 117.69226 * 274.98109 * 10 9 8
24 24 C 1.50700 * 109.47535 * 240.00000 * 2 1 3
25 25 C 1.38670 * 120.42029 * 119.99336 * 24 2 1
26 26 C 1.38623 * 118.41956 * 179.97438 * 25 24 2
27 27 C 1.38227 * 119.16521 * 0.02562 * 26 25 24
28 28 N 1.31857 * 120.76127 * 359.97438 * 27 26 25
29 29 C 1.31888 * 121.72234 * 359.70788 * 28 27 26
30 30 H 1.09005 * 109.47021 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.47592 * 299.99635 * 1 2 3
32 32 H 1.08994 * 109.47429 * 60.00646 * 1 2 3
33 33 H 1.08997 * 109.47486 * 175.00338 * 4 2 1
34 34 H 1.08999 * 109.47447 * 55.00791 * 4 2 1
35 35 H 0.97000 * 120.00115 * 0.02562 * 7 5 4
36 36 H 1.09003 * 109.46936 * 60.00791 * 8 7 5
37 37 H 1.08994 * 109.47266 * 300.01104 * 8 7 5
38 38 H 1.08996 * 109.47166 * 60.01196 * 9 8 7
39 39 H 1.08994 * 109.47540 * 300.00387 * 9 8 7
40 40 H 1.07997 * 118.17373 * 0.86395 * 11 10 9
41 41 H 1.09007 * 109.51511 * 108.65398 * 12 11 10
42 42 H 1.08999 * 109.52217 * 228.83518 * 12 11 10
43 43 H 0.97000 * 119.99856 * 179.97438 * 17 16 14
44 44 H 1.08999 * 109.77792 * 178.43066 * 22 13 12
45 45 H 1.08997 * 109.77697 * 57.62702 * 22 13 12
46 46 H 1.09000 * 109.31396 * 281.28816 * 23 10 9
47 47 H 1.08999 * 109.31466 * 40.71906 * 23 10 9
48 48 H 1.08005 * 120.79054 * 359.97438 * 25 24 2
49 49 H 1.08008 * 120.41993 * 180.02562 * 26 25 24
50 50 H 1.08000 * 119.62007 * 179.97438 * 27 26 25
51 51 H 1.07999 * 119.61606 * 180.30912 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0400 -0.7211 1.2492
5 6 1.6413 0.0573 2.4766
6 8 1.0109 1.0871 2.3633
7 7 1.9845 -0.3916 3.7002
8 6 1.5974 0.3653 4.8933
9 6 2.1074 -0.3559 6.1425
10 6 1.7086 0.4225 7.3699
11 6 0.6183 0.0746 7.9750
12 6 0.0831 0.7728 9.1940
13 7 1.1113 1.6861 9.7162
14 6 1.3706 1.7801 11.0576
15 1 2.3336 2.1309 11.3981
16 6 0.3956 1.4245 11.9795
17 7 -0.8565 1.2932 11.5956
18 14 0.8606 1.1326 13.7649
19 1 2.3207 1.3424 13.9368
20 1 0.1181 2.0827 14.6316
21 1 0.5130 -0.2601 14.1456
22 6 1.8485 2.4997 8.7335
23 6 2.6030 1.5452 7.8043
24 6 2.0324 -0.7104 -1.2304
25 6 2.8301 -0.0448 -2.1489
26 6 3.2696 -0.7384 -3.2658
27 6 2.9004 -2.0607 -3.4260
28 7 2.1404 -2.6618 -2.5318
29 6 1.7091 -2.0350 -1.4545
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3634 0.5137 -0.8900
33 1 3.1263 -0.7993 1.2057
34 1 1.6055 -1.7197 1.2953
35 1 2.4884 -1.2154 3.7909
36 1 0.5111 0.4442 4.9369
37 1 2.0325 1.3636 4.8473
38 1 3.1936 -0.4343 6.0988
39 1 1.6725 -1.3543 6.1887
40 1 0.0601 -0.7611 7.5796
41 1 -0.8098 1.3382 8.9271
42 1 -0.1662 0.0348 9.9564
43 1 -1.5377 1.0444 12.2398
44 1 2.5562 3.1490 9.2490
45 1 1.1487 3.1021 8.1543
46 1 3.4653 1.1361 8.3307
47 1 2.9464 2.0928 6.9266
48 1 3.1025 0.9893 -1.9977
49 1 3.8927 -0.2516 -4.0016
50 1 3.2383 -2.6079 -4.2937
51 1 1.0923 -2.5619 -0.7415
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001161383256.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:52
Heat of formation + Delta-G solvation = 19.669029 kcal
Electronic energy + Delta-G solvation = -28458.147573 eV
Core-core repulsion = 24550.609758 eV
Total energy + Delta-G solvation = -3907.537815 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-40.85033 -39.85131 -37.94910 -36.11739 -35.23572 -33.58213 -32.65025 -31.48019
-30.60284 -29.86875 -29.09351 -27.71971 -25.32061 -24.51289 -23.92788 -23.04345
-22.48386 -21.28348 -20.95958 -20.14732 -17.78077 -17.60413 -17.22783 -16.72290
-16.17302 -15.87695 -15.65487 -15.32311 -15.05623 -14.61358 -14.44955 -14.35526
-14.04648 -13.72205 -13.59786 -13.50741 -13.46424 -13.22380 -13.15140 -12.68208
-12.41942 -12.19294 -12.00048 -11.70647 -11.63938 -11.53507 -11.40267 -11.25341
-11.00317 -10.91349 -10.74120 -10.29348 -10.26566 -10.21941 -9.95435 -9.81328
-9.79732 -9.53752 -9.36495 -9.14852 -8.65591 -7.92400 -6.72436 -5.78320
-3.16903 0.67120 0.85804 2.48016 2.80485 3.13338 3.37680 3.39516
3.45224 3.47401 3.99558 4.23523 4.30731 4.50072 4.50452 4.55474
4.60447 4.73232 4.77040 5.01288 5.09487 5.13900 5.19520 5.22208
5.27692 5.33656 5.38307 5.40295 5.55723 5.60816 5.64102 5.65234
5.77330 5.79465 5.96063 6.00206 6.02772 6.10203 6.16268 6.21413
6.27090 6.35864 6.40032 6.55863 6.79334 6.90837 7.23447 7.31008
7.35471 7.41657 7.55609 7.75843 7.88615 8.07826 8.39528 9.21025
9.83926 10.42841 11.32102
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.036326 B = 0.001495 C = 0.001491
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 770.619539 B =18719.469645 C =18778.755557
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.031 4.031
3 H 0.090 0.910
4 C -0.136 4.136
5 C 0.511 3.489
6 O -0.536 6.536
7 N -0.731 5.731
8 C 0.124 3.876
9 C -0.091 4.091
10 C -0.143 4.143
11 C -0.146 4.146
12 C 0.196 3.804
13 N -0.595 5.595
14 C -0.244 4.244
15 H 0.069 0.931
16 C -0.002 4.002
17 N -0.909 5.909
18 Si 0.904 3.096
19 H -0.278 1.278
20 H -0.291 1.291
21 H -0.290 1.290
22 C 0.142 3.858
23 C -0.091 4.091
24 C -0.126 4.126
25 C -0.073 4.073
26 C -0.170 4.170
27 C 0.090 3.910
28 N -0.484 5.484
29 C 0.103 3.897
30 H 0.051 0.949
31 H 0.084 0.916
32 H 0.054 0.946
33 H 0.094 0.906
34 H 0.095 0.905
35 H 0.399 0.601
36 H 0.069 0.931
37 H 0.069 0.931
38 H 0.066 0.934
39 H 0.066 0.934
40 H 0.091 0.909
41 H 0.038 0.962
42 H 0.091 0.909
43 H 0.253 0.747
44 H 0.056 0.944
45 H 0.023 0.977
46 H 0.062 0.938
47 H 0.052 0.948
48 H 0.135 0.865
49 H 0.134 0.866
50 H 0.154 0.846
51 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.327 -6.792 -28.429 30.392
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.050 4.050
3 H 0.108 0.892
4 C -0.176 4.176
5 C 0.297 3.703
6 O -0.413 6.413
7 N -0.382 5.382
8 C 0.001 3.999
9 C -0.129 4.129
10 C -0.144 4.144
11 C -0.165 4.165
12 C 0.071 3.929
13 N -0.318 5.318
14 C -0.374 4.374
15 H 0.087 0.913
16 C -0.200 4.200
17 N -0.555 5.555
18 Si 0.734 3.266
19 H -0.203 1.203
20 H -0.218 1.218
21 H -0.216 1.216
22 C 0.016 3.984
23 C -0.130 4.130
24 C -0.128 4.128
25 C -0.099 4.099
26 C -0.190 4.190
27 C -0.067 4.067
28 N -0.192 5.192
29 C -0.055 4.055
30 H 0.071 0.929
31 H 0.102 0.898
32 H 0.073 0.927
33 H 0.112 0.888
34 H 0.114 0.886
35 H 0.233 0.767
36 H 0.087 0.913
37 H 0.087 0.913
38 H 0.085 0.915
39 H 0.084 0.916
40 H 0.109 0.891
41 H 0.056 0.944
42 H 0.109 0.891
43 H 0.063 0.937
44 H 0.074 0.926
45 H 0.041 0.959
46 H 0.080 0.920
47 H 0.071 0.929
48 H 0.153 0.847
49 H 0.152 0.848
50 H 0.171 0.829
51 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges 7.501 -6.952 -28.503 30.282
hybrid contribution 0.691 0.184 1.032 1.255
sum 8.191 -6.768 -27.472 29.455
Atomic orbital electron populations
1.21988 0.93218 1.01963 1.03654 1.19822 0.97044 0.99160 0.88991
0.89215 1.21771 1.03066 1.00320 0.92410 1.20558 0.79399 0.85801
0.84568 1.90698 1.39500 1.24496 1.86564 1.46153 1.57941 1.27906
1.06233 1.21437 1.00535 0.95427 0.82513 1.20905 1.00901 0.98441
0.92672 1.20231 0.98164 0.99627 0.96388 1.23118 0.95963 0.98646
0.98801 1.19726 0.89918 0.92517 0.90770 1.44169 1.42356 1.43211
1.02112 1.19232 0.96621 1.40408 0.81104 0.91334 1.24987 0.94785
1.02264 0.97969 1.70028 0.99464 1.52253 1.33733 0.86189 0.77823
0.77571 0.85010 1.20328 1.21757 1.21633 1.20957 0.94373 0.92046
0.91052 1.20754 0.97799 0.95794 0.98630 1.20940 0.98508 0.95736
0.97584 1.21580 0.94816 1.00328 0.93127 1.22170 1.01733 0.96218
0.98891 1.22783 0.93965 0.92409 0.97531 1.67712 1.10032 1.38896
1.02552 1.22650 0.96864 0.91505 0.94439 0.92946 0.89772 0.92675
0.88799 0.88634 0.76735 0.91283 0.91313 0.91524 0.91566 0.89095
0.94414 0.89119 0.93692 0.92559 0.95873 0.91969 0.92930 0.84738
0.84760 0.82850 0.82904
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.26 8.75 37.16 0.33 -0.93 16
2 C -0.03 -0.23 2.22 -91.78 -0.20 -0.43 16
3 H 0.09 0.75 7.74 -51.92 -0.40 0.35 16
4 C -0.14 -0.91 4.92 -27.89 -0.14 -1.05 16
5 C 0.51 5.25 7.55 -10.98 -0.08 5.17 16
6 O -0.54 -7.61 13.96 5.56 0.08 -7.53 16
7 N -0.73 -6.90 5.56 -60.30 -0.33 -7.23 16
8 C 0.12 1.52 5.66 -4.04 -0.02 1.49 16
9 C -0.09 -1.14 5.32 -27.88 -0.15 -1.29 16
10 C -0.14 -2.43 5.11 -100.98 -0.52 -2.94 16
11 C -0.15 -2.79 9.47 -35.78 -0.34 -3.13 16
12 C 0.20 4.71 5.25 -5.05 -0.03 4.68 16
13 N -0.60 -15.06 3.01 -173.59 -0.52 -15.58 16
14 C -0.24 -6.73 9.71 -15.06 -0.15 -6.88 16
15 H 0.07 1.85 7.88 -52.48 -0.41 1.44 16
16 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16
17 N -0.91 -26.39 11.07 55.49 0.61 -25.77 16
18 Si 0.90 21.74 29.58 -169.99 -5.03 16.71 16
19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16
21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
22 C 0.14 3.00 6.57 -3.53 -0.02 2.98 16
23 C -0.09 -1.59 5.95 -28.18 -0.17 -1.75 16
24 C -0.13 -0.90 4.79 -104.48 -0.50 -1.40 16
25 C -0.07 -0.47 9.81 -39.28 -0.39 -0.85 16
26 C -0.17 -0.99 10.11 -39.44 -0.40 -1.39 16
27 C 0.09 0.62 11.18 -17.54 -0.20 0.42 16
28 N -0.48 -4.32 10.36 -13.25 -0.14 -4.46 16
29 C 0.10 0.79 9.95 -17.55 -0.17 0.62 16
30 H 0.05 0.38 7.43 -51.93 -0.39 -0.01 16
31 H 0.08 0.90 5.95 -51.93 -0.31 0.59 16
32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.10 0.49 7.58 -51.93 -0.39 0.09 16
35 H 0.40 2.61 8.47 -40.82 -0.35 2.27 16
36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
37 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16
38 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16
39 H 0.07 0.77 7.78 -51.93 -0.40 0.36 16
40 H 0.09 1.54 7.73 -52.49 -0.41 1.14 16
41 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16
42 H 0.09 2.42 6.40 -51.93 -0.33 2.09 16
43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16
44 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16
45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
47 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16
48 H 0.13 0.65 8.00 -52.48 -0.42 0.23 16
49 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16
50 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16
51 H 0.15 0.95 7.19 -52.49 -0.38 0.57 16
LS Contribution 409.88 15.07 6.18 6.18
Total: -1.00 -33.07 409.88 -10.77 -43.84
By element:
Atomic # 1 Polarization: 9.08 SS G_CDS: -8.38 Total: 0.70 kcal
Atomic # 6 Polarization: -3.61 SS G_CDS: -3.23 Total: -6.84 kcal
Atomic # 7 Polarization: -52.67 SS G_CDS: -0.38 Total: -53.05 kcal
Atomic # 8 Polarization: -7.61 SS G_CDS: 0.08 Total: -7.53 kcal
Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal
Total LS contribution 6.18 Total: 6.18 kcal
Total: -33.07 -10.77 -43.84 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161383256.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.506 kcal
(2) G-P(sol) polarization free energy of solvation -33.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.435 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.766 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.669 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds