Wall clock time and date at job start Sat Apr 11 2020 07:01:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09008 * 109.46333 * 2 1
4 4 C 1.52992 * 109.47278 * 119.99359 * 2 1 3
5 5 C 1.50702 * 109.47489 * 295.00306 * 4 2 1
6 6 O 1.21277 * 119.99947 * 0.02562 * 5 4 2
7 7 N 1.34776 * 120.00278 * 179.97438 * 5 4 2
8 8 C 1.46498 * 120.00238 * 179.97438 * 7 5 4
9 9 C 1.52997 * 109.47047 * 180.02562 * 8 7 5
10 10 C 1.50712 * 109.46805 * 180.02562 * 9 8 7
11 11 C 1.29454 * 117.69203 * 95.00070 * 10 9 8
12 12 C 1.50323 * 123.64590 * 181.13493 * 11 10 9
13 13 N 1.47102 * 109.11127 * 348.54347 * 12 11 10
14 14 C 1.36940 * 121.51360 * 223.15765 * 13 12 11
15 15 H 1.08004 * 119.99962 * 156.19051 * 14 13 12
16 16 C 1.38811 * 119.99874 * 336.18990 * 14 13 12
17 17 N 1.31620 * 119.99972 * 344.47015 * 16 14 13
18 18 Si 1.86793 * 120.00126 * 164.47761 * 16 14 13
19 19 H 1.48510 * 109.47011 * 359.97438 * 18 16 14
20 20 H 1.48503 * 109.47588 * 119.99663 * 18 16 14
21 21 H 1.48502 * 109.47132 * 240.00287 * 18 16 14
22 22 C 1.47346 * 117.11188 * 43.34401 * 13 12 11
23 23 C 1.49973 * 117.69226 * 274.98109 * 10 9 8
24 24 C 1.50700 * 109.47535 * 240.00000 * 2 1 3
25 25 C 1.38670 * 120.42029 * 119.99336 * 24 2 1
26 26 C 1.38623 * 118.41956 * 179.97438 * 25 24 2
27 27 C 1.38227 * 119.16521 * 0.02562 * 26 25 24
28 28 N 1.31857 * 120.76127 * 359.97438 * 27 26 25
29 29 C 1.31888 * 121.72234 * 359.70788 * 28 27 26
30 30 H 1.09005 * 109.47021 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.47592 * 299.99635 * 1 2 3
32 32 H 1.08994 * 109.47429 * 60.00646 * 1 2 3
33 33 H 1.08997 * 109.47486 * 175.00338 * 4 2 1
34 34 H 1.08999 * 109.47447 * 55.00791 * 4 2 1
35 35 H 0.97000 * 120.00115 * 0.02562 * 7 5 4
36 36 H 1.09003 * 109.46936 * 60.00791 * 8 7 5
37 37 H 1.08994 * 109.47266 * 300.01104 * 8 7 5
38 38 H 1.08996 * 109.47166 * 60.01196 * 9 8 7
39 39 H 1.08994 * 109.47540 * 300.00387 * 9 8 7
40 40 H 1.07997 * 118.17373 * 0.86395 * 11 10 9
41 41 H 1.09007 * 109.51511 * 108.65398 * 12 11 10
42 42 H 1.08999 * 109.52217 * 228.83518 * 12 11 10
43 43 H 0.97000 * 119.99856 * 179.97438 * 17 16 14
44 44 H 1.08999 * 109.77792 * 178.43066 * 22 13 12
45 45 H 1.08997 * 109.77697 * 57.62702 * 22 13 12
46 46 H 1.09000 * 109.31396 * 281.28816 * 23 10 9
47 47 H 1.08999 * 109.31466 * 40.71906 * 23 10 9
48 48 H 1.08005 * 120.79054 * 359.97438 * 25 24 2
49 49 H 1.08008 * 120.41993 * 180.02562 * 26 25 24
50 50 H 1.08000 * 119.62007 * 179.97438 * 27 26 25
51 51 H 1.07999 * 119.61606 * 180.30912 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0400 -0.7211 1.2492
5 6 1.6413 0.0573 2.4766
6 8 1.0109 1.0871 2.3633
7 7 1.9845 -0.3916 3.7002
8 6 1.5974 0.3653 4.8933
9 6 2.1074 -0.3559 6.1425
10 6 1.7086 0.4225 7.3699
11 6 0.6183 0.0746 7.9750
12 6 0.0831 0.7728 9.1940
13 7 1.1113 1.6861 9.7162
14 6 1.3706 1.7801 11.0576
15 1 2.3336 2.1309 11.3981
16 6 0.3956 1.4245 11.9795
17 7 -0.8565 1.2932 11.5956
18 14 0.8606 1.1326 13.7649
19 1 2.3207 1.3424 13.9368
20 1 0.1181 2.0827 14.6316
21 1 0.5130 -0.2601 14.1456
22 6 1.8485 2.4997 8.7335
23 6 2.6030 1.5452 7.8043
24 6 2.0324 -0.7104 -1.2304
25 6 2.8301 -0.0448 -2.1489
26 6 3.2696 -0.7384 -3.2658
27 6 2.9004 -2.0607 -3.4260
28 7 2.1404 -2.6618 -2.5318
29 6 1.7091 -2.0350 -1.4545
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3634 0.5137 -0.8900
33 1 3.1263 -0.7993 1.2057
34 1 1.6055 -1.7197 1.2953
35 1 2.4884 -1.2154 3.7909
36 1 0.5111 0.4442 4.9369
37 1 2.0325 1.3636 4.8473
38 1 3.1936 -0.4343 6.0988
39 1 1.6725 -1.3543 6.1887
40 1 0.0601 -0.7611 7.5796
41 1 -0.8098 1.3382 8.9271
42 1 -0.1662 0.0348 9.9564
43 1 -1.5377 1.0444 12.2398
44 1 2.5562 3.1490 9.2490
45 1 1.1487 3.1021 8.1543
46 1 3.4653 1.1361 8.3307
47 1 2.9464 2.0928 6.9266
48 1 3.1025 0.9893 -1.9977
49 1 3.8927 -0.2516 -4.0016
50 1 3.2383 -2.6079 -4.2937
51 1 1.0923 -2.5619 -0.7415
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001161383256.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:50
Heat of formation + Delta-G solvation = -0.017141 kcal
Electronic energy + Delta-G solvation = -28459.001229 eV
Core-core repulsion = 24550.609758 eV
Total energy + Delta-G solvation = -3908.391472 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.41472 -40.61936 -39.47070 -37.00417 -36.22842 -35.07303 -33.21639 -33.09339
-31.54893 -31.19443 -30.30689 -28.66589 -26.92558 -25.19009 -24.62921 -24.40296
-23.87612 -22.47558 -21.99281 -20.88858 -19.46214 -18.37280 -17.82515 -17.61690
-17.23180 -17.04295 -16.71873 -16.62721 -15.95655 -15.71034 -15.61345 -15.27973
-15.14795 -14.99032 -14.92841 -14.50686 -14.20455 -14.13650 -13.93215 -13.83800
-13.72698 -13.37788 -13.24035 -12.97147 -12.81545 -12.78841 -12.60605 -12.35784
-12.25967 -12.21696 -12.12806 -11.86756 -11.80910 -11.66228 -11.23645 -10.77243
-10.70006 -10.69680 -10.33263 -10.03351 -9.86357 -9.47973 -8.75926 -7.88564
-5.30648 0.19378 0.37750 1.42728 1.46238 1.47164 1.58185 1.70216
2.28154 2.50652 2.89682 3.28353 3.50260 3.65738 3.68773 3.79640
3.97247 4.00244 4.05126 4.11198 4.12294 4.15111 4.23768 4.31173
4.33697 4.48611 4.55398 4.60500 4.67941 4.68911 4.70784 4.80458
4.86568 4.90988 4.92217 4.99222 5.01378 5.12674 5.14492 5.18483
5.23898 5.26079 5.34947 5.41657 5.45112 5.50196 5.55652 5.60666
5.81782 5.88724 6.29016 6.33225 6.62577 7.06731 7.12584 7.33659
7.82589 8.37828 9.20215
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.036326 B = 0.001495 C = 0.001491
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 770.619539 B =18719.469645 C =18778.755557
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.024 4.024
3 H 0.078 0.922
4 C -0.126 4.126
5 C 0.508 3.492
6 O -0.580 6.580
7 N -0.719 5.719
8 C 0.133 3.867
9 C -0.078 4.078
10 C -0.121 4.121
11 C -0.175 4.175
12 C 0.206 3.794
13 N -0.615 5.615
14 C -0.257 4.257
15 H 0.072 0.928
16 C -0.057 4.057
17 N -0.942 5.942
18 Si 0.971 3.029
19 H -0.265 1.265
20 H -0.293 1.293
21 H -0.290 1.290
22 C 0.134 3.866
23 C -0.087 4.087
24 C -0.127 4.127
25 C -0.081 4.081
26 C -0.167 4.167
27 C 0.078 3.922
28 N -0.513 5.513
29 C 0.092 3.908
30 H 0.063 0.937
31 H 0.058 0.942
32 H 0.051 0.949
33 H 0.115 0.885
34 H 0.118 0.882
35 H 0.417 0.583
36 H 0.047 0.953
37 H 0.057 0.943
38 H 0.092 0.908
39 H 0.083 0.917
40 H 0.113 0.887
41 H 0.002 0.998
42 H 0.055 0.945
43 H 0.249 0.751
44 H 0.059 0.941
45 H 0.016 0.984
46 H 0.069 0.931
47 H 0.086 0.914
48 H 0.148 0.852
49 H 0.160 0.840
50 H 0.174 0.826
51 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.110 -8.069 -30.294 33.261
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.044 4.044
3 H 0.097 0.903
4 C -0.166 4.166
5 C 0.296 3.704
6 O -0.460 6.460
7 N -0.372 5.372
8 C 0.009 3.991
9 C -0.116 4.116
10 C -0.122 4.122
11 C -0.194 4.194
12 C 0.081 3.919
13 N -0.339 5.339
14 C -0.387 4.387
15 H 0.090 0.910
16 C -0.251 4.251
17 N -0.589 5.589
18 Si 0.799 3.201
19 H -0.189 1.189
20 H -0.220 1.220
21 H -0.217 1.217
22 C 0.009 3.991
23 C -0.125 4.125
24 C -0.129 4.129
25 C -0.107 4.107
26 C -0.187 4.187
27 C -0.078 4.078
28 N -0.222 5.222
29 C -0.065 4.065
30 H 0.082 0.918
31 H 0.077 0.923
32 H 0.070 0.930
33 H 0.133 0.867
34 H 0.136 0.864
35 H 0.254 0.746
36 H 0.065 0.935
37 H 0.075 0.925
38 H 0.111 0.889
39 H 0.101 0.899
40 H 0.131 0.869
41 H 0.019 0.981
42 H 0.073 0.927
43 H 0.058 0.942
44 H 0.077 0.923
45 H 0.035 0.965
46 H 0.087 0.913
47 H 0.104 0.896
48 H 0.166 0.834
49 H 0.178 0.822
50 H 0.191 0.809
51 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges 10.329 -8.251 -30.392 33.142
hybrid contribution -0.136 0.679 1.517 1.668
sum 10.192 -7.573 -28.875 31.543
Atomic orbital electron populations
1.21925 0.94182 1.02224 1.02188 1.19705 0.96174 0.98785 0.89749
0.90350 1.21773 1.04420 1.00443 0.89937 1.21181 0.78383 0.85356
0.85500 1.90694 1.41462 1.26624 1.87179 1.45972 1.57744 1.28258
1.05185 1.21115 0.99118 0.95291 0.83589 1.20800 1.02543 0.98254
0.89997 1.20606 0.96282 0.98469 0.96814 1.22811 0.98100 1.00473
0.98021 1.19374 0.89136 0.91472 0.91967 1.44457 1.42823 1.44300
1.02291 1.19589 0.96702 1.39854 0.82545 0.91042 1.25793 0.94706
1.02602 1.02034 1.70205 1.00400 1.53471 1.34817 0.85145 0.78023
0.76967 0.79955 1.18928 1.21983 1.21685 1.21160 0.94235 0.92744
0.90976 1.20709 0.97367 0.95442 0.98992 1.20849 0.98933 0.95568
0.97552 1.21865 0.94563 1.01091 0.93174 1.22450 1.01370 0.95816
0.99033 1.23208 0.93604 0.93183 0.97815 1.67716 1.11160 1.39921
1.03410 1.22828 0.97181 0.91838 0.94610 0.91812 0.92334 0.92956
0.86668 0.86414 0.74608 0.93496 0.92505 0.88917 0.89872 0.86937
0.98056 0.92682 0.94163 0.92267 0.96546 0.91301 0.89617 0.83414
0.82232 0.80941 0.81953
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.39 8.75 71.98 0.63 -1.76 16
2 C -0.02 -0.33 2.22 -11.54 -0.03 -0.36 16
3 H 0.08 1.24 7.74 -2.38 -0.02 1.22 16
4 C -0.13 -1.37 4.92 29.85 0.15 -1.22 16
5 C 0.51 9.51 7.55 87.66 0.66 10.17 16
6 O -0.58 -16.28 13.96 -3.02 -0.04 -16.32 16
7 N -0.72 -11.52 5.56 -463.07 -2.57 -14.09 16
8 C 0.13 2.95 5.66 86.38 0.49 3.44 16
9 C -0.08 -1.67 5.32 29.85 0.16 -1.51 16
10 C -0.12 -3.86 5.11 -15.13 -0.08 -3.94 16
11 C -0.17 -6.69 9.47 27.11 0.26 -6.43 16
12 C 0.21 10.37 5.25 85.40 0.45 10.81 16
13 N -0.61 -31.87 3.01 -703.12 -2.12 -33.99 16
14 C -0.26 -14.43 9.71 84.03 0.82 -13.62 16
15 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16
16 C -0.06 -3.23 5.01 84.86 0.43 -2.81 16
17 N -0.94 -56.95 11.07 21.65 0.24 -56.71 16
18 Si 0.97 45.48 29.58 68.60 2.03 47.51 16
19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16
20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16
21 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16
22 C 0.13 5.65 6.57 86.25 0.57 6.22 16
23 C -0.09 -2.83 5.95 29.65 0.18 -2.66 16
24 C -0.13 -1.58 4.79 -19.77 -0.09 -1.68 16
25 C -0.08 -0.87 9.81 22.47 0.22 -0.65 16
26 C -0.17 -1.54 10.11 22.36 0.23 -1.32 16
27 C 0.08 0.93 11.18 84.69 0.95 1.88 16
28 N -0.51 -8.40 10.36 -195.84 -2.03 -10.43 16
29 C 0.09 1.27 9.95 84.67 0.84 2.11 16
30 H 0.06 0.85 7.43 -2.38 -0.02 0.83 16
31 H 0.06 1.28 5.95 -2.39 -0.01 1.26 16
32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
33 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16
34 H 0.12 0.80 7.58 -2.39 -0.02 0.78 16
35 H 0.42 3.75 8.47 -92.71 -0.79 2.97 16
36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16
37 H 0.06 1.42 8.09 -2.39 -0.02 1.40 16
38 H 0.09 1.60 8.11 -2.39 -0.02 1.58 16
39 H 0.08 1.58 7.78 -2.39 -0.02 1.56 16
40 H 0.11 3.75 7.73 -2.91 -0.02 3.73 16
41 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16
42 H 0.05 3.11 6.40 -2.39 -0.02 3.09 16
43 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16
44 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16
45 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16
46 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16
47 H 0.09 2.29 8.08 -2.39 -0.02 2.27 16
48 H 0.15 1.12 8.00 -2.91 -0.02 1.10 16
49 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16
50 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16
51 H 0.16 1.71 7.19 -2.91 -0.02 1.69 16
Total: -1.00 -75.57 409.88 2.45 -73.12
By element:
Atomic # 1 Polarization: 14.11 SS G_CDS: 0.13 Total: 14.24 kcal
Atomic # 6 Polarization: -10.14 SS G_CDS: 6.81 Total: -3.32 kcal
Atomic # 7 Polarization: -108.74 SS G_CDS: -6.48 Total: -115.22 kcal
Atomic # 8 Polarization: -16.28 SS G_CDS: -0.04 Total: -16.32 kcal
Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal
Total: -75.57 2.45 -73.12 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161383256.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.102 kcal
(2) G-P(sol) polarization free energy of solvation -75.574 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.472 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.119 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds