Wall clock time and date at job start Sat Apr 11 2020 07:02:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46492 * 1
3 3 C 1.46500 * 120.00213 * 2 1
4 4 C 1.50706 * 109.47299 * 89.99368 * 3 2 1
5 5 H 1.07998 * 119.99503 * 0.02562 * 4 3 2
6 6 C 1.37871 * 120.00434 * 180.02562 * 4 3 2
7 7 N 1.31516 * 119.99826 * 359.72891 * 6 4 3
8 8 Si 1.86800 * 120.00406 * 180.02562 * 6 4 3
9 9 H 1.48501 * 109.47364 * 179.72558 * 8 6 4
10 10 H 1.48508 * 109.46883 * 299.72681 * 8 6 4
11 11 H 1.48497 * 109.46870 * 59.72491 * 8 6 4
12 12 C 1.39678 * 120.00377 * 179.97438 * 2 1 3
13 13 C 1.38903 * 120.07795 * 179.72874 * 12 2 1
14 14 C 1.38105 * 119.92643 * 179.76841 * 13 12 2
15 15 C 1.38289 * 120.07317 * 0.50514 * 14 13 12
16 16 C 1.50693 * 119.92693 * 179.76715 * 15 14 13
17 17 N 1.46896 * 109.47242 * 269.97628 * 16 15 14
18 18 C 1.46904 * 111.00150 * 180.02562 * 17 16 15
19 19 H 1.09001 * 110.85564 * 322.65972 * 18 17 16
20 20 C 1.54628 * 110.97204 * 86.45520 * 18 17 16
21 21 C 1.51273 * 104.19704 * 142.91557 * 20 18 17
22 22 O 1.21286 * 124.94275 * 163.70703 * 21 20 18
23 23 N 1.34419 * 110.11580 * 343.75002 * 21 20 18
24 24 C 1.46503 * 124.34917 * 179.61352 * 23 21 20
25 25 C 1.53006 * 117.49828 * 8.76983 * 24 23 21
26 26 C 1.53003 * 117.49882 * 300.10896 * 24 23 21
27 27 C 1.46762 * 111.30283 * 359.59189 * 23 21 20
28 28 C 1.38287 * 120.14744 * 359.74313 * 15 14 13
29 29 C 1.38101 * 120.07837 * 0.02562 * 28 15 14
30 30 H 1.09004 * 109.46823 * 90.00119 * 1 2 3
31 31 H 1.09003 * 109.47468 * 210.00163 * 1 2 3
32 32 H 1.08998 * 109.47406 * 330.00231 * 1 2 3
33 33 H 1.09004 * 109.47078 * 330.00130 * 3 2 1
34 34 H 1.08993 * 109.47364 * 209.99901 * 3 2 1
35 35 H 0.97000 * 120.00236 * 0.27947 * 7 6 4
36 36 H 1.08008 * 120.03612 * 359.97438 * 13 12 2
37 37 H 1.07998 * 119.96765 * 180.24902 * 14 13 12
38 38 H 1.08999 * 109.47424 * 29.97996 * 16 15 14
39 39 H 1.09003 * 109.47124 * 149.97604 * 16 15 14
40 40 H 1.00898 * 110.99851 * 56.04642 * 17 16 15
41 41 H 1.09000 * 110.48612 * 261.59966 * 20 18 17
42 42 H 1.09004 * 110.48318 * 24.10510 * 20 18 17
43 43 H 1.08995 * 115.55374 * 154.43969 * 24 23 21
44 44 H 1.08993 * 117.49840 * 0.02562 * 25 24 23
45 45 H 1.08998 * 117.49867 * 145.02514 * 25 24 23
46 46 H 1.09001 * 117.49967 * 214.97701 * 26 24 23
47 47 H 1.08997 * 117.49665 * 0.02562 * 26 24 23
48 48 H 1.09007 * 110.24235 * 258.01770 * 27 23 21
49 49 H 1.08998 * 110.24643 * 136.01980 * 27 23 21
50 50 H 1.08006 * 119.96064 * 180.02562 * 28 15 14
51 51 H 1.07998 * 120.04131 * 179.97438 * 29 28 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4485 1.7039 1.4209
5 1 2.0979 1.0959 2.2417
6 6 3.1258 2.8780 1.6728
7 7 3.5575 3.6156 0.6732
8 14 3.4377 3.4170 3.4340
9 1 4.1854 4.7000 3.4340
10 1 2.1401 3.6002 4.1327
11 1 4.2353 2.3792 4.1353
12 6 2.1634 -1.2096 0.0005
13 6 3.5524 -1.2114 -0.0051
14 6 4.2399 -2.4092 0.0002
15 6 3.5469 -3.6059 0.0007
16 6 4.3004 -4.9110 0.0013
17 7 4.5447 -5.3359 -1.3834
18 6 5.2784 -6.6080 -1.4221
19 1 6.0184 -6.6536 -0.6230
20 6 4.3077 -7.8093 -1.3467
21 6 4.9228 -8.8415 -2.2657
22 8 4.6345 -10.0195 -2.2790
23 7 5.8360 -8.2634 -3.0649
24 6 6.6262 -8.9788 -4.0699
25 6 6.2511 -10.4338 -4.3589
26 6 7.5304 -10.1125 -3.5819
27 6 5.9395 -6.8233 -2.8016
28 6 2.1640 -3.6077 0.0012
29 6 1.4703 -2.4136 0.0006
30 1 -0.3633 0.0000 -1.0277
31 1 -0.3634 -0.8900 0.5139
32 1 -0.3634 0.8900 0.5138
33 1 1.6084 2.0284 -0.5138
34 1 3.1498 1.1384 -0.5138
35 1 3.3959 3.3357 -0.2413
36 1 4.0942 -0.2771 -0.0104
37 1 5.3198 -2.4113 -0.0001
38 1 5.2529 -4.7804 0.5148
39 1 3.7114 -5.6703 0.5159
40 1 5.0335 -4.6204 -1.9003
41 1 4.2517 -8.1911 -0.3273
42 1 3.3175 -7.5223 -1.7005
43 1 6.9819 -8.3755 -4.9050
44 1 5.4163 -10.8585 -3.8015
45 1 6.3606 -10.7876 -5.3840
46 1 8.4807 -10.2552 -4.0962
47 1 7.5370 -10.3263 -2.5131
48 1 5.4058 -6.2605 -3.5675
49 1 6.9859 -6.5198 -2.7699
50 1 1.6258 -4.5441 0.0020
51 1 0.3904 -2.4157 0.0006
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000174931065.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:02
Heat of formation + Delta-G solvation = 37.510043 kcal
Electronic energy + Delta-G solvation = -28776.331238 eV
Core-core repulsion = 24869.567067 eV
Total energy + Delta-G solvation = -3906.764171 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.99773 -39.18620 -37.55447 -36.95007 -36.07975 -34.34698 -32.95514 -30.85340
-30.53735 -29.22009 -27.58825 -27.58601 -25.44021 -23.82305 -23.34328 -22.73564
-22.34551 -21.68655 -21.46205 -19.83823 -19.41534 -17.26983 -17.17095 -16.95889
-16.73371 -16.09553 -15.50628 -15.08697 -14.85789 -14.66962 -14.54890 -14.08560
-14.08294 -13.86534 -13.80980 -13.69479 -13.38852 -13.15679 -12.99488 -12.93856
-12.46777 -12.21978 -11.96076 -11.87854 -11.71507 -11.53318 -11.48275 -11.37194
-11.35368 -11.06304 -10.83889 -10.75882 -10.69153 -10.19873 -10.05219 -9.84086
-9.59063 -8.88898 -8.77367 -8.60966 -8.50319 -8.38244 -6.66564 -6.31713
-4.23546 1.99052 2.07572 2.22744 2.48044 3.37099 3.38329 3.46242
3.57169 3.78405 3.99507 4.01278 4.13408 4.42570 4.43833 4.48469
4.57475 4.58279 4.67241 4.88448 5.01049 5.11123 5.16481 5.23269
5.25893 5.26500 5.33019 5.38893 5.46912 5.51205 5.60271 5.62253
5.69314 5.71197 5.89315 5.89975 5.95863 6.16204 6.25305 6.30603
6.30766 6.50330 6.68247 6.73756 6.77133 6.82752 7.00076 7.02598
7.06812 7.21534 7.46370 7.84968 7.91888 7.97822 8.30117 8.45090
8.69626 9.46998 10.86903
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.022012 B = 0.001751 C = 0.001701
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1271.709700 B =15985.992439 C =16454.832852
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.098 3.902
2 N -0.611 5.611
3 C 0.239 3.761
4 C -0.612 4.612
5 H 0.053 0.947
6 C 0.020 3.980
7 N -0.908 5.908
8 Si 1.069 2.931
9 H -0.281 1.281
10 H -0.288 1.288
11 H -0.287 1.287
12 C 0.243 3.757
13 C -0.188 4.188
14 C -0.065 4.065
15 C -0.175 4.175
16 C 0.116 3.884
17 N -0.672 5.672
18 C 0.074 3.926
19 H 0.067 0.933
20 C -0.146 4.146
21 C 0.522 3.478
22 O -0.531 6.531
23 N -0.591 5.591
24 C 0.078 3.922
25 C -0.190 4.190
26 C -0.191 4.191
27 C 0.105 3.895
28 C -0.049 4.049
29 C -0.221 4.221
30 H 0.036 0.964
31 H 0.057 0.943
32 H 0.067 0.933
33 H 0.019 0.981
34 H 0.026 0.974
35 H 0.267 0.733
36 H 0.128 0.872
37 H 0.109 0.891
38 H 0.034 0.966
39 H 0.074 0.926
40 H 0.348 0.652
41 H 0.099 0.901
42 H 0.118 0.882
43 H 0.129 0.871
44 H 0.132 0.868
45 H 0.097 0.903
46 H 0.100 0.900
47 H 0.094 0.906
48 H 0.085 0.915
49 H 0.080 0.920
50 H 0.111 0.889
51 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.017 -21.924 -7.774 23.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 N -0.316 5.316
3 C 0.119 3.881
4 C -0.650 4.650
5 H 0.072 0.928
6 C -0.184 4.184
7 N -0.544 5.544
8 Si 0.897 3.103
9 H -0.207 1.207
10 H -0.214 1.214
11 H -0.213 1.213
12 C 0.135 3.865
13 C -0.211 4.211
14 C -0.085 4.085
15 C -0.178 4.178
16 C -0.012 4.012
17 N -0.305 5.305
18 C -0.037 4.037
19 H 0.085 0.915
20 C -0.187 4.187
21 C 0.310 3.690
22 O -0.408 6.408
23 N -0.324 5.324
24 C -0.025 4.025
25 C -0.227 4.227
26 C -0.230 4.230
27 C -0.018 4.018
28 C -0.068 4.068
29 C -0.245 4.245
30 H 0.055 0.945
31 H 0.075 0.925
32 H 0.085 0.915
33 H 0.037 0.963
34 H 0.043 0.957
35 H 0.077 0.923
36 H 0.146 0.854
37 H 0.127 0.873
38 H 0.052 0.948
39 H 0.092 0.908
40 H 0.168 0.832
41 H 0.117 0.883
42 H 0.136 0.864
43 H 0.147 0.853
44 H 0.149 0.851
45 H 0.115 0.885
46 H 0.118 0.882
47 H 0.112 0.888
48 H 0.103 0.897
49 H 0.099 0.901
50 H 0.129 0.871
51 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 4.859 -21.420 -6.981 23.047
hybrid contribution 0.190 -0.681 -0.641 0.954
sum 5.048 -22.101 -7.622 23.917
Atomic orbital electron populations
1.21483 0.81226 1.02095 0.99755 1.46878 1.04400 1.04271 1.76094
1.19348 0.91507 0.79669 0.97597 1.22382 1.40775 1.09614 0.92268
0.92838 1.25830 0.93392 0.93204 1.05989 1.70831 1.43885 1.39615
1.00071 0.83528 0.76553 0.76348 0.73864 1.20662 1.21424 1.21320
1.17963 0.91500 0.85940 0.91057 1.20803 0.92655 0.98636 1.08985
1.20651 0.98463 0.91667 0.97691 1.19118 0.93627 0.93146 1.11875
1.20703 0.97932 0.94662 0.87914 1.60638 1.50670 1.04110 1.15038
1.22390 0.94056 0.91339 0.95927 0.91520 1.22475 1.01537 0.93949
1.00715 1.21032 0.78595 0.88489 0.80869 1.90604 1.63834 1.16321
1.70028 1.47623 1.39277 1.08918 1.36576 1.21534 0.98863 0.88948
0.93185 1.23770 1.00827 0.96184 1.01946 1.23366 0.95156 1.03198
1.01261 1.22236 1.01624 0.80600 0.97348 1.20508 0.93214 0.96548
0.96549 1.20583 0.99118 0.91367 1.13386 0.94524 0.92452 0.91464
0.96268 0.95656 0.92255 0.85423 0.87337 0.94751 0.90759 0.83234
0.88282 0.86369 0.85326 0.85066 0.88501 0.88180 0.88768 0.89726
0.90149 0.87130 0.86827
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.70 10.19 59.84 0.61 2.31 16
2 N -0.61 -12.81 2.99 -181.00 -0.54 -13.35 16
3 C 0.24 5.84 4.23 -5.19 -0.02 5.82 16
4 C -0.61 -16.58 9.39 -34.44 -0.32 -16.90 16
5 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16
6 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16
7 N -0.91 -26.32 13.65 55.43 0.76 -25.57 16
8 Si 1.07 24.54 29.90 -169.99 -5.08 19.46 16
9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16
10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16
11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16
12 C 0.24 4.74 6.55 -83.78 -0.55 4.19 16
13 C -0.19 -3.62 9.21 -39.38 -0.36 -3.98 16
14 C -0.07 -1.01 9.69 -39.61 -0.38 -1.40 16
15 C -0.17 -2.39 5.39 -104.59 -0.56 -2.96 16
16 C 0.12 1.18 5.67 -4.98 -0.03 1.15 16
17 N -0.67 -5.83 6.28 -106.27 -0.67 -6.49 16
18 C 0.07 0.53 3.43 -66.08 -0.23 0.31 16
19 H 0.07 0.46 7.92 -51.93 -0.41 0.05 16
20 C -0.15 -1.24 6.54 -26.75 -0.17 -1.41 16
21 C 0.52 5.55 7.88 -10.86 -0.09 5.47 16
22 O -0.53 -7.33 14.69 5.55 0.08 -7.25 16
23 N -0.59 -5.08 3.27 -164.84 -0.54 -5.62 16
24 C 0.08 0.60 6.88 -67.92 -0.47 0.14 16
25 C -0.19 -1.61 9.78 -26.69 -0.26 -1.87 16
26 C -0.19 -1.45 10.34 -26.69 -0.28 -1.72 16
27 C 0.11 0.69 6.85 -3.12 -0.02 0.66 16
28 C -0.05 -0.71 9.69 -39.61 -0.38 -1.09 16
29 C -0.22 -3.69 9.21 -39.38 -0.36 -4.05 16
30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16
31 H 0.06 0.87 6.20 -51.93 -0.32 0.55 16
32 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16
33 H 0.02 0.49 7.94 -51.93 -0.41 0.08 16
34 H 0.03 0.65 6.05 -51.93 -0.31 0.33 16
35 H 0.27 7.65 7.22 -40.82 -0.29 7.36 16
36 H 0.13 2.74 6.14 -52.48 -0.32 2.42 16
37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16
38 H 0.03 0.33 8.03 -51.93 -0.42 -0.08 16
39 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16
40 H 0.35 2.89 8.51 -39.29 -0.33 2.55 16
41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16
42 H 0.12 1.06 8.08 -51.93 -0.42 0.64 16
43 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16
44 H 0.13 1.49 5.30 -51.93 -0.27 1.22 16
45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
47 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
48 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16
49 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
50 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16
51 H 0.11 1.72 6.14 -52.49 -0.32 1.40 16
LS Contribution 411.16 15.07 6.20 6.20
Total: -1.00 -31.23 411.16 -11.89 -43.12
By element:
Atomic # 1 Polarization: 12.49 SS G_CDS: -8.11 Total: 4.38 kcal
Atomic # 6 Polarization: -10.89 SS G_CDS: -3.98 Total: -14.87 kcal
Atomic # 7 Polarization: -50.04 SS G_CDS: -0.99 Total: -51.03 kcal
Atomic # 8 Polarization: -7.33 SS G_CDS: 0.08 Total: -7.25 kcal
Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.46 kcal
Total LS contribution 6.20 Total: 6.20 kcal
Total: -31.23 -11.89 -43.12 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000174931065.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.635 kcal
(2) G-P(sol) polarization free energy of solvation -31.234 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.400 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.890 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.510 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds