Wall clock time and date at job start Sat Apr 11 2020 07:02:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46492 * 1
3 3 C 1.46500 * 120.00213 * 2 1
4 4 C 1.50706 * 109.47299 * 89.99368 * 3 2 1
5 5 H 1.07998 * 119.99503 * 0.02562 * 4 3 2
6 6 C 1.37871 * 120.00434 * 180.02562 * 4 3 2
7 7 N 1.31516 * 119.99826 * 359.72891 * 6 4 3
8 8 Si 1.86800 * 120.00406 * 180.02562 * 6 4 3
9 9 H 1.48501 * 109.47364 * 179.72558 * 8 6 4
10 10 H 1.48508 * 109.46883 * 299.72681 * 8 6 4
11 11 H 1.48497 * 109.46870 * 59.72491 * 8 6 4
12 12 C 1.39678 * 120.00377 * 179.97438 * 2 1 3
13 13 C 1.38903 * 120.07795 * 179.72874 * 12 2 1
14 14 C 1.38105 * 119.92643 * 179.76841 * 13 12 2
15 15 C 1.38289 * 120.07317 * 0.50514 * 14 13 12
16 16 C 1.50693 * 119.92693 * 179.76715 * 15 14 13
17 17 N 1.46896 * 109.47242 * 269.97628 * 16 15 14
18 18 C 1.46904 * 111.00150 * 180.02562 * 17 16 15
19 19 H 1.09001 * 110.85564 * 322.65972 * 18 17 16
20 20 C 1.54628 * 110.97204 * 86.45520 * 18 17 16
21 21 C 1.51273 * 104.19704 * 142.91557 * 20 18 17
22 22 O 1.21286 * 124.94275 * 163.70703 * 21 20 18
23 23 N 1.34419 * 110.11580 * 343.75002 * 21 20 18
24 24 C 1.46503 * 124.34917 * 179.61352 * 23 21 20
25 25 C 1.53006 * 117.49828 * 8.76983 * 24 23 21
26 26 C 1.53003 * 117.49882 * 300.10896 * 24 23 21
27 27 C 1.46762 * 111.30283 * 359.59189 * 23 21 20
28 28 C 1.38287 * 120.14744 * 359.74313 * 15 14 13
29 29 C 1.38101 * 120.07837 * 0.02562 * 28 15 14
30 30 H 1.09004 * 109.46823 * 90.00119 * 1 2 3
31 31 H 1.09003 * 109.47468 * 210.00163 * 1 2 3
32 32 H 1.08998 * 109.47406 * 330.00231 * 1 2 3
33 33 H 1.09004 * 109.47078 * 330.00130 * 3 2 1
34 34 H 1.08993 * 109.47364 * 209.99901 * 3 2 1
35 35 H 0.97000 * 120.00236 * 0.27947 * 7 6 4
36 36 H 1.08008 * 120.03612 * 359.97438 * 13 12 2
37 37 H 1.07998 * 119.96765 * 180.24902 * 14 13 12
38 38 H 1.08999 * 109.47424 * 29.97996 * 16 15 14
39 39 H 1.09003 * 109.47124 * 149.97604 * 16 15 14
40 40 H 1.00898 * 110.99851 * 56.04642 * 17 16 15
41 41 H 1.09000 * 110.48612 * 261.59966 * 20 18 17
42 42 H 1.09004 * 110.48318 * 24.10510 * 20 18 17
43 43 H 1.08995 * 115.55374 * 154.43969 * 24 23 21
44 44 H 1.08993 * 117.49840 * 0.02562 * 25 24 23
45 45 H 1.08998 * 117.49867 * 145.02514 * 25 24 23
46 46 H 1.09001 * 117.49967 * 214.97701 * 26 24 23
47 47 H 1.08997 * 117.49665 * 0.02562 * 26 24 23
48 48 H 1.09007 * 110.24235 * 258.01770 * 27 23 21
49 49 H 1.08998 * 110.24643 * 136.01980 * 27 23 21
50 50 H 1.08006 * 119.96064 * 180.02562 * 28 15 14
51 51 H 1.07998 * 120.04131 * 179.97438 * 29 28 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4485 1.7039 1.4209
5 1 2.0979 1.0959 2.2417
6 6 3.1258 2.8780 1.6728
7 7 3.5575 3.6156 0.6732
8 14 3.4377 3.4170 3.4340
9 1 4.1854 4.7000 3.4340
10 1 2.1401 3.6002 4.1327
11 1 4.2353 2.3792 4.1353
12 6 2.1634 -1.2096 0.0005
13 6 3.5524 -1.2114 -0.0051
14 6 4.2399 -2.4092 0.0002
15 6 3.5469 -3.6059 0.0007
16 6 4.3004 -4.9110 0.0013
17 7 4.5447 -5.3359 -1.3834
18 6 5.2784 -6.6080 -1.4221
19 1 6.0184 -6.6536 -0.6230
20 6 4.3077 -7.8093 -1.3467
21 6 4.9228 -8.8415 -2.2657
22 8 4.6345 -10.0195 -2.2790
23 7 5.8360 -8.2634 -3.0649
24 6 6.6262 -8.9788 -4.0699
25 6 6.2511 -10.4338 -4.3589
26 6 7.5304 -10.1125 -3.5819
27 6 5.9395 -6.8233 -2.8016
28 6 2.1640 -3.6077 0.0012
29 6 1.4703 -2.4136 0.0006
30 1 -0.3633 0.0000 -1.0277
31 1 -0.3634 -0.8900 0.5139
32 1 -0.3634 0.8900 0.5138
33 1 1.6084 2.0284 -0.5138
34 1 3.1498 1.1384 -0.5138
35 1 3.3959 3.3357 -0.2413
36 1 4.0942 -0.2771 -0.0104
37 1 5.3198 -2.4113 -0.0001
38 1 5.2529 -4.7804 0.5148
39 1 3.7114 -5.6703 0.5159
40 1 5.0335 -4.6204 -1.9003
41 1 4.2517 -8.1911 -0.3273
42 1 3.3175 -7.5223 -1.7005
43 1 6.9819 -8.3755 -4.9050
44 1 5.4163 -10.8585 -3.8015
45 1 6.3606 -10.7876 -5.3840
46 1 8.4807 -10.2552 -4.0962
47 1 7.5370 -10.3263 -2.5131
48 1 5.4058 -6.2605 -3.5675
49 1 6.9859 -6.5198 -2.7699
50 1 1.6258 -4.5441 0.0020
51 1 0.3904 -2.4157 0.0006
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000174931065.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:00
Heat of formation + Delta-G solvation = 19.409615 kcal
Electronic energy + Delta-G solvation = -28777.116131 eV
Core-core repulsion = 24869.567067 eV
Total energy + Delta-G solvation = -3907.549064 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-41.69583 -40.49116 -38.41358 -37.67298 -37.36224 -35.42920 -34.74331 -31.88335
-31.81836 -30.13898 -29.31921 -28.38041 -26.73991 -25.41652 -23.99027 -23.74988
-23.33950 -23.05382 -22.08813 -21.15550 -20.15202 -19.10025 -18.16673 -17.90540
-17.62301 -16.98203 -16.74106 -16.09152 -15.92944 -15.72715 -15.56407 -15.45293
-15.32480 -15.11259 -14.66968 -14.60841 -14.36364 -14.24990 -14.12878 -14.08934
-13.77737 -13.39497 -13.21527 -13.17779 -13.02593 -12.70871 -12.56801 -12.48214
-12.38436 -12.12741 -11.97596 -11.95681 -11.91918 -11.47670 -11.38871 -11.27882
-10.63343 -10.61463 -10.35146 -9.68754 -9.55181 -9.38330 -8.76918 -7.90825
-6.44751 0.69220 0.81076 1.45453 1.50356 1.57010 1.77394 1.86274
2.45736 2.56658 2.83221 2.95279 3.09439 3.26834 3.42500 3.55731
3.84649 3.96880 3.99231 4.03013 4.10871 4.16275 4.19675 4.27948
4.35613 4.49450 4.52656 4.56876 4.66131 4.67438 4.70392 4.74059
4.75453 4.78264 4.79256 4.86133 4.87330 4.99688 5.00538 5.03904
5.08401 5.25440 5.29374 5.58173 5.64110 5.66369 5.83977 5.89950
6.00576 6.02771 6.08509 6.22377 6.43724 6.45654 6.63444 6.85626
7.10068 7.34547 8.66364
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.022012 B = 0.001751 C = 0.001701
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1271.709700 B =15985.992439 C =16454.832852
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.099 3.901
2 N -0.630 5.630
3 C 0.254 3.746
4 C -0.616 4.616
5 H 0.041 0.959
6 C -0.028 4.028
7 N -0.930 5.930
8 Si 1.114 2.886
9 H -0.280 1.280
10 H -0.271 1.271
11 H -0.274 1.274
12 C 0.209 3.791
13 C -0.218 4.218
14 C -0.064 4.064
15 C -0.155 4.155
16 C 0.121 3.879
17 N -0.674 5.674
18 C 0.083 3.917
19 H 0.079 0.921
20 C -0.141 4.141
21 C 0.510 3.490
22 O -0.572 6.572
23 N -0.590 5.590
24 C 0.075 3.925
25 C -0.204 4.204
26 C -0.184 4.184
27 C 0.106 3.894
28 C -0.047 4.047
29 C -0.219 4.219
30 H 0.053 0.947
31 H 0.079 0.921
32 H 0.053 0.947
33 H 0.002 0.998
34 H 0.007 0.993
35 H 0.256 0.744
36 H 0.090 0.910
37 H 0.129 0.871
38 H 0.046 0.954
39 H 0.086 0.914
40 H 0.353 0.647
41 H 0.104 0.896
42 H 0.115 0.885
43 H 0.157 0.843
44 H 0.100 0.900
45 H 0.115 0.885
46 H 0.124 0.876
47 H 0.075 0.925
48 H 0.090 0.910
49 H 0.102 0.898
50 H 0.142 0.858
51 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.799 -23.782 -7.483 25.598
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.044 4.044
2 N -0.338 5.338
3 C 0.131 3.869
4 C -0.654 4.654
5 H 0.059 0.941
6 C -0.226 4.226
7 N -0.568 5.568
8 Si 0.936 3.064
9 H -0.205 1.205
10 H -0.197 1.197
11 H -0.199 1.199
12 C 0.105 3.895
13 C -0.241 4.241
14 C -0.083 4.083
15 C -0.157 4.157
16 C -0.007 4.007
17 N -0.307 5.307
18 C -0.027 4.027
19 H 0.097 0.903
20 C -0.182 4.182
21 C 0.299 3.701
22 O -0.453 6.453
23 N -0.321 5.321
24 C -0.028 4.028
25 C -0.241 4.241
26 C -0.223 4.223
27 C -0.016 4.016
28 C -0.066 4.066
29 C -0.242 4.242
30 H 0.071 0.929
31 H 0.098 0.902
32 H 0.072 0.928
33 H 0.020 0.980
34 H 0.025 0.975
35 H 0.066 0.934
36 H 0.108 0.892
37 H 0.147 0.853
38 H 0.065 0.935
39 H 0.104 0.896
40 H 0.173 0.827
41 H 0.123 0.877
42 H 0.133 0.867
43 H 0.175 0.825
44 H 0.118 0.882
45 H 0.133 0.867
46 H 0.142 0.858
47 H 0.093 0.907
48 H 0.108 0.892
49 H 0.121 0.879
50 H 0.159 0.841
51 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 5.644 -23.306 -6.715 24.902
hybrid contribution -0.019 -0.283 -0.803 0.852
sum 5.625 -23.589 -7.518 25.389
Atomic orbital electron populations
1.21590 0.79399 1.02494 1.00941 1.46754 1.05496 1.03466 1.78050
1.18885 0.90880 0.81293 0.95804 1.22611 1.40250 1.09396 0.93191
0.94055 1.27232 0.92887 0.93477 1.09037 1.70940 1.45447 1.40370
0.99995 0.82953 0.77349 0.76248 0.69850 1.20547 1.19658 1.19946
1.18266 0.91804 0.86330 0.93140 1.20735 0.93005 0.98646 1.11711
1.20870 0.99579 0.91022 0.96811 1.19502 0.93713 0.94048 1.08475
1.20669 0.98223 0.92791 0.89065 1.60516 1.51468 1.04696 1.14030
1.22316 0.93669 0.89905 0.96818 0.90343 1.22447 1.01465 0.93835
1.00457 1.21462 0.78907 0.88307 0.81415 1.90596 1.65258 1.18111
1.71314 1.47781 1.38514 1.09797 1.36054 1.21873 0.98332 0.88932
0.93650 1.23692 1.00468 0.97316 1.02662 1.23366 0.95774 1.02871
1.00263 1.22358 1.03014 0.79238 0.96976 1.20916 0.93745 0.96906
0.95079 1.20812 1.00000 0.90858 1.12515 0.92889 0.90206 0.92828
0.98005 0.97471 0.93428 0.89160 0.85279 0.93538 0.89577 0.82713
0.87749 0.86703 0.82538 0.88216 0.86700 0.85806 0.90669 0.89179
0.87938 0.84067 0.85345
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 3.42 10.19 127.77 1.30 4.72 16
2 N -0.63 -27.19 2.99 -726.56 -2.17 -29.36 16
3 C 0.25 13.08 4.23 85.64 0.36 13.45 16
4 C -0.62 -34.57 9.39 25.60 0.24 -34.33 16
5 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16
6 C -0.03 -1.56 5.46 84.65 0.46 -1.10 16
7 N -0.93 -55.68 13.65 21.45 0.29 -55.39 16
8 Si 1.11 49.68 29.90 68.60 2.05 51.73 16
9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16
10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16
11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
12 C 0.21 8.24 6.55 38.21 0.25 8.49 16
13 C -0.22 -8.60 9.21 22.40 0.21 -8.40 16
14 C -0.06 -1.89 9.69 22.25 0.22 -1.67 16
15 C -0.15 -3.76 5.39 -19.84 -0.11 -3.87 16
16 C 0.12 1.96 5.67 85.56 0.49 2.45 16
17 N -0.67 -9.10 6.28 -490.13 -3.08 -12.18 16
18 C 0.08 0.92 3.43 45.97 0.16 1.07 16
19 H 0.08 0.75 7.92 -2.39 -0.02 0.73 16
20 C -0.14 -2.07 6.54 30.58 0.20 -1.87 16
21 C 0.51 10.33 7.88 87.90 0.69 11.03 16
22 O -0.57 -16.08 14.69 -3.05 -0.04 -16.13 16
23 N -0.59 -8.91 3.27 -794.02 -2.60 -11.50 16
24 C 0.08 1.00 6.88 44.99 0.31 1.31 16
25 C -0.20 -3.31 9.78 30.62 0.30 -3.01 16
26 C -0.18 -2.50 10.34 30.62 0.32 -2.18 16
27 C 0.11 1.03 6.85 86.83 0.59 1.62 16
28 C -0.05 -1.22 9.69 22.25 0.22 -1.01 16
29 C -0.22 -6.91 9.21 22.40 0.21 -6.70 16
30 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16
31 H 0.08 2.34 6.20 -2.39 -0.01 2.33 16
32 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16
33 H 0.00 0.11 7.94 -2.39 -0.02 0.09 16
34 H 0.01 0.40 6.05 -2.39 -0.01 0.39 16
35 H 0.26 15.44 7.22 -92.71 -0.67 14.77 16
36 H 0.09 4.17 6.14 -2.91 -0.02 4.15 16
37 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16
38 H 0.05 0.69 8.03 -2.39 -0.02 0.67 16
39 H 0.09 1.27 8.08 -2.39 -0.02 1.26 16
40 H 0.35 4.51 8.51 -89.70 -0.76 3.75 16
41 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16
42 H 0.11 1.79 8.08 -2.39 -0.02 1.77 16
43 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16
44 H 0.10 2.36 5.30 -2.39 -0.01 2.34 16
45 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16
46 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16
47 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
48 H 0.09 0.83 8.07 -2.38 -0.02 0.81 16
49 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16
50 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16
51 H 0.13 3.58 6.14 -2.91 -0.02 3.57 16
Total: -1.00 -71.76 411.16 1.13 -70.63
By element:
Atomic # 1 Polarization: 21.95 SS G_CDS: 0.27 Total: 22.22 kcal
Atomic # 6 Polarization: -26.43 SS G_CDS: 6.41 Total: -20.02 kcal
Atomic # 7 Polarization: -100.88 SS G_CDS: -7.55 Total: -108.43 kcal
Atomic # 8 Polarization: -16.08 SS G_CDS: -0.04 Total: -16.13 kcal
Atomic # 14 Polarization: 49.68 SS G_CDS: 2.05 Total: 51.73 kcal
Total: -71.76 1.13 -70.63 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000174931065.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.037 kcal
(2) G-P(sol) polarization free energy of solvation -71.760 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.277 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.628 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.410 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds