Wall clock time and date at job start Sat Apr 11 2020 07:00:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46901 * 110.99447 * 2 1
4 4 C 1.50701 * 109.47143 * 66.05077 * 3 2 1
5 5 C 1.38287 * 119.92219 * 89.99786 * 4 3 2
6 6 C 1.38112 * 120.07142 * 179.97438 * 5 4 3
7 7 C 1.38907 * 119.92292 * 359.97438 * 6 5 4
8 8 N 1.39676 * 120.07278 * 179.97438 * 7 6 5
9 9 C 1.47013 * 110.99992 * 179.97438 * 8 7 6
10 10 C 1.53103 * 109.25954 * 177.60949 * 9 8 7
11 11 O 1.43012 * 109.25655 * 56.84755 * 10 9 8
12 12 C 1.43021 * 113.74007 * 301.32990 * 11 10 9
13 13 C 1.47019 * 110.99913 * 56.36535 * 8 7 6
14 14 C 1.38916 * 119.85307 * 0.25415 * 7 6 5
15 15 C 1.38102 * 119.92272 * 359.49419 * 14 7 6
16 16 C 1.46897 * 111.00037 * 236.05118 * 2 1 3
17 17 C 1.52997 * 109.47261 * 199.84763 * 16 2 1
18 18 H 1.09000 * 109.47366 * 305.14578 * 17 16 2
19 19 C 1.47199 * 109.47395 * 65.14364 * 17 16 2
20 20 N 3.66707 * 123.90608 * 157.44641 * 2 1 3
21 21 C 1.53001 * 109.47253 * 185.14830 * 17 16 2
22 22 C 1.50699 * 109.47222 * 174.99847 * 21 17 16
23 23 H 1.08004 * 120.00112 * 359.97438 * 22 21 17
24 24 C 1.37880 * 120.00361 * 179.97438 * 22 21 17
25 25 N 1.31515 * 119.99683 * 359.97438 * 24 22 21
26 26 Si 1.86800 * 120.00239 * 180.02562 * 24 22 21
27 27 H 1.48494 * 109.46910 * 0.02562 * 26 24 22
28 28 H 1.48506 * 109.46819 * 120.00163 * 26 24 22
29 29 H 1.48498 * 109.47043 * 240.00168 * 26 24 22
30 30 H 1.08993 * 109.47349 * 54.69796 * 1 2 3
31 31 H 1.09002 * 109.46611 * 174.69570 * 1 2 3
32 32 H 1.09000 * 109.46802 * 294.69091 * 1 2 3
33 33 H 1.08999 * 109.47578 * 306.04804 * 3 2 1
34 34 H 1.09007 * 109.47041 * 186.04898 * 3 2 1
35 35 H 1.07997 * 119.97127 * 359.95148 * 5 4 3
36 36 H 1.07996 * 120.03923 * 180.02562 * 6 5 4
37 37 H 1.08998 * 109.50910 * 57.67162 * 9 8 7
38 38 H 1.09002 * 109.50952 * 297.53896 * 9 8 7
39 39 H 1.09000 * 109.50446 * 176.78286 * 10 9 8
40 40 H 1.08997 * 109.50300 * 296.86799 * 10 9 8
41 41 H 1.08998 * 109.50742 * 178.60808 * 12 11 10
42 42 H 1.09002 * 109.50511 * 298.74257 * 12 11 10
43 43 H 1.08995 * 109.50530 * 62.45840 * 13 8 7
44 44 H 1.08995 * 109.50273 * 302.32380 * 13 8 7
45 45 H 1.07997 * 120.03665 * 179.73134 * 14 7 6
46 46 H 1.07999 * 119.96509 * 180.25492 * 15 14 7
47 47 H 1.09002 * 109.47070 * 319.84962 * 16 2 1
48 48 H 1.09002 * 109.47709 * 79.84710 * 16 2 1
49 49 H 1.08999 * 109.46816 * 294.99582 * 21 17 16
50 50 H 1.08999 * 109.47601 * 54.99665 * 21 17 16
51 51 H 0.97000 * 120.00404 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3715 0.0000
4 6 1.6369 2.0471 1.2985
5 6 2.4954 1.9639 2.3794
6 6 2.1702 2.5824 3.5707
7 6 0.9794 3.2889 3.6822
8 7 0.6472 3.9152 4.8856
9 6 -0.6483 4.6023 4.7819
10 6 -1.0009 5.2226 6.1365
11 8 0.0497 6.1057 6.5386
12 6 1.3256 5.4693 6.6504
13 6 1.7015 4.8520 5.3007
14 6 0.1171 3.3665 2.5958
15 6 0.4509 2.7501 1.4059
16 6 1.9955 -0.7659 -1.1376
17 6 3.4449 -1.1665 -0.8558
18 1 4.0288 -0.2765 -0.6209
19 6 3.4843 -2.0945 0.2862
20 7 3.5146 -2.8107 1.1673
21 6 4.0340 -1.8517 -2.0904
22 6 5.4955 -2.1359 -1.8579
23 1 5.9582 -1.8554 -0.9231
24 6 6.2423 -2.7540 -2.8384
25 7 5.6788 -3.0959 -3.9765
26 14 8.0538 -3.1069 -2.5499
27 1 8.4420 -2.6290 -1.1986
28 1 8.2945 -4.5692 -2.6454
29 1 8.8647 -2.4036 -3.5761
30 1 -0.3634 0.5938 -0.8386
31 1 -0.3632 -1.0233 -0.0950
32 1 -0.3633 0.4293 0.9337
33 1 1.5610 1.9274 -0.8309
34 1 3.0797 1.3445 -0.1083
35 1 3.4210 1.4144 2.2921
36 1 2.8412 2.5174 4.4144
37 1 -1.4189 3.8855 4.4982
38 1 -0.5849 5.3869 4.0279
39 1 -1.9327 5.7814 6.0494
40 1 -1.1179 4.4332 6.8788
41 1 2.0764 6.2064 6.9351
42 1 1.2770 4.6870 7.4079
43 1 1.8020 5.6404 4.5549
44 1 2.6465 4.3173 5.3959
45 1 -0.8114 3.9114 2.6805
46 1 -0.2171 2.8135 0.5596
47 1 1.3923 -1.6622 -1.2825
48 1 1.9566 -0.1525 -2.0378
49 1 3.5064 -2.7879 -2.2728
50 1 3.9241 -1.1982 -2.9558
51 1 6.2042 -3.5304 -4.6666
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000764864533.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:41
Heat of formation + Delta-G solvation = -0.074132 kcal
Electronic energy + Delta-G solvation = -29216.740801 eV
Core-core repulsion = 25308.346858 eV
Total energy + Delta-G solvation = -3908.393943 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.23 seconds
Orbital eigenvalues (eV)
-41.50671 -40.00384 -38.95824 -37.39670 -36.33836 -35.42550 -33.52522 -32.74586
-31.67929 -31.51465 -28.96506 -28.68083 -26.77694 -25.57455 -25.49711 -23.57269
-23.15708 -22.78531 -22.04611 -21.02456 -18.68019 -18.52506 -18.21994 -17.27187
-16.88607 -16.77652 -16.44443 -16.33081 -16.14667 -16.00832 -15.80449 -15.63103
-15.22308 -14.97167 -14.73333 -14.45071 -14.37431 -14.17992 -14.12497 -13.75069
-13.45918 -13.24958 -13.10922 -13.02582 -12.88229 -12.77895 -12.66247 -12.54840
-12.45938 -12.39743 -12.34856 -12.05622 -11.79464 -11.71926 -11.62741 -11.36276
-11.09280 -10.99564 -10.54830 -10.40384 -9.82850 -9.21160 -8.74564 -8.18951
-6.26586 0.38930 0.50892 1.38783 1.42151 1.52368 2.09298 2.17205
2.41654 2.49976 2.77993 2.89825 3.16427 3.23742 3.39635 3.77700
3.81490 3.93096 3.94623 4.05296 4.09861 4.15235 4.17927 4.23938
4.35037 4.42813 4.48353 4.49961 4.53518 4.62395 4.67138 4.69033
4.73079 4.74851 4.82083 4.86497 4.88734 4.92854 4.99208 4.99892
5.10399 5.14150 5.28266 5.40098 5.48324 5.63457 5.76872 5.78888
5.80416 5.94452 6.08972 6.10549 6.20322 6.24569 6.30174 6.84720
6.96066 7.41747 8.92029
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.019067 B = 0.001984 C = 0.001878
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1468.147308 B =14109.038185 C =14903.757469
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 N -0.555 5.555
3 C 0.092 3.908
4 C -0.102 4.102
5 C -0.088 4.088
6 C -0.149 4.149
7 C 0.098 3.902
8 N -0.497 5.497
9 C 0.013 3.987
10 C 0.061 3.939
11 O -0.402 6.402
12 C 0.063 3.937
13 C 0.021 3.979
14 C -0.173 4.173
15 C -0.085 4.085
16 C 0.072 3.928
17 C 0.023 3.977
18 H 0.114 0.886
19 C 0.267 3.733
20 N -0.517 5.517
21 C 0.038 3.962
22 C -0.536 4.536
23 H 0.052 0.948
24 C 0.011 3.989
25 N -0.922 5.922
26 Si 0.947 3.053
27 H -0.270 1.270
28 H -0.286 1.286
29 H -0.272 1.272
30 H 0.044 0.956
31 H 0.061 0.939
32 H 0.068 0.932
33 H 0.061 0.939
34 H 0.081 0.919
35 H 0.117 0.883
36 H 0.126 0.874
37 H 0.101 0.899
38 H 0.055 0.945
39 H 0.121 0.879
40 H 0.061 0.939
41 H 0.119 0.881
42 H 0.063 0.937
43 H 0.047 0.953
44 H 0.097 0.903
45 H 0.142 0.858
46 H 0.138 0.862
47 H 0.076 0.924
48 H 0.075 0.925
49 H 0.001 0.999
50 H 0.037 0.963
51 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.399 21.557 14.810 30.350
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.279 5.279
3 C -0.035 4.035
4 C -0.103 4.103
5 C -0.107 4.107
6 C -0.169 4.169
7 C 0.001 3.999
8 N -0.214 5.214
9 C -0.113 4.113
10 C -0.016 4.016
11 O -0.321 6.321
12 C -0.014 4.014
13 C -0.105 4.105
14 C -0.194 4.194
15 C -0.104 4.104
16 C -0.057 4.057
17 C 0.001 3.999
18 H 0.131 0.869
19 C -0.049 4.049
20 N -0.195 5.195
21 C -0.001 4.001
22 C -0.574 4.574
23 H 0.071 0.929
24 C -0.188 4.188
25 N -0.563 5.563
26 Si 0.773 3.227
27 H -0.195 1.195
28 H -0.212 1.212
29 H -0.197 1.197
30 H 0.062 0.938
31 H 0.080 0.920
32 H 0.087 0.913
33 H 0.079 0.921
34 H 0.100 0.900
35 H 0.135 0.865
36 H 0.144 0.856
37 H 0.119 0.881
38 H 0.073 0.927
39 H 0.139 0.861
40 H 0.079 0.921
41 H 0.137 0.863
42 H 0.081 0.919
43 H 0.065 0.935
44 H 0.115 0.885
45 H 0.160 0.840
46 H 0.155 0.845
47 H 0.095 0.905
48 H 0.093 0.907
49 H 0.020 0.980
50 H 0.055 0.945
51 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -15.250 20.056 16.884 30.329
hybrid contribution 1.074 0.009 -1.709 2.019
sum -14.176 20.065 15.175 28.876
Atomic orbital electron populations
1.22406 0.86172 1.01906 1.01468 1.61913 1.09040 1.13598 1.43370
1.21130 1.00953 0.87411 0.93981 1.19743 0.95494 0.99335 0.95756
1.21004 0.99593 0.97475 0.92610 1.20834 0.97360 1.00426 0.98256
1.19024 0.94939 0.97420 0.88546 1.59363 1.04464 1.30064 1.27464
1.23032 0.91072 0.98102 0.99135 1.22847 0.91120 0.93848 0.93740
1.87980 1.18039 1.37087 1.88990 1.22820 0.85608 0.98102 0.94886
1.22965 0.95018 0.94306 0.98168 1.21425 1.01688 1.03959 0.92297
1.21080 0.95644 0.95901 0.97793 1.22091 0.92659 0.98517 0.92439
1.19186 0.98256 0.94454 0.88016 0.86867 1.29370 0.90027 0.92547
0.92911 1.80972 1.11849 1.12542 1.14112 1.19001 0.94049 0.95368
0.91702 1.21568 0.96157 1.38752 1.00931 0.92942 1.25702 1.02400
0.95595 0.95110 1.70033 1.37633 1.42065 1.06527 0.85662 0.80938
0.77678 0.78405 1.19470 1.21194 1.19747 0.93776 0.91970 0.91300
0.92124 0.90027 0.86530 0.85629 0.88069 0.92689 0.86063 0.92067
0.86304 0.91875 0.93512 0.88503 0.84023 0.84456 0.90519 0.90675
0.98038 0.94501 0.92745
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.58 9.01 127.69 1.15 1.73 16
2 N -0.56 -13.96 4.39 -927.04 -4.07 -18.02 16
3 C 0.09 2.02 4.94 85.56 0.42 2.44 16
4 C -0.10 -2.22 4.88 -19.84 -0.10 -2.32 16
5 C -0.09 -2.08 9.69 22.25 0.22 -1.86 16
6 C -0.15 -3.24 9.20 22.40 0.21 -3.04 16
7 C 0.10 1.94 5.63 38.21 0.22 2.15 16
8 N -0.50 -8.44 4.77 -694.29 -3.31 -11.75 16
9 C 0.01 0.17 4.33 86.32 0.37 0.55 16
10 C 0.06 0.71 7.01 72.02 0.50 1.21 16
11 O -0.40 -6.25 10.83 -148.98 -1.61 -7.86 16
12 C 0.06 0.78 7.01 72.02 0.50 1.28 16
13 C 0.02 0.31 5.41 86.31 0.47 0.77 16
14 C -0.17 -3.07 8.82 22.40 0.20 -2.87 16
15 C -0.09 -1.56 8.09 22.25 0.18 -1.38 16
16 C 0.07 2.00 4.36 86.30 0.38 2.38 16
17 C 0.02 0.82 2.27 -12.60 -0.03 0.79 16
18 H 0.11 3.77 6.67 -2.39 -0.02 3.75 16
19 C 0.27 11.22 13.67 89.44 1.22 12.44 16
20 N -0.52 -23.82 18.54 20.00 0.37 -23.45 16
21 C 0.04 1.72 4.42 29.85 0.13 1.85 16
22 C -0.54 -28.38 8.60 25.60 0.22 -28.16 16
23 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16
24 C 0.01 0.59 5.46 84.66 0.46 1.05 16
25 N -0.92 -52.78 13.29 21.45 0.28 -52.50 16
26 Si 0.95 43.54 29.54 68.60 2.03 45.56 16
27 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
28 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16
29 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
30 H 0.04 0.74 8.07 -2.39 -0.02 0.72 16
31 H 0.06 1.32 7.85 -2.39 -0.02 1.31 16
32 H 0.07 1.41 6.52 -2.39 -0.02 1.39 16
33 H 0.06 1.12 8.01 -2.39 -0.02 1.10 16
34 H 0.08 1.89 6.52 -2.38 -0.02 1.87 16
35 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16
36 H 0.13 2.51 7.20 -2.91 -0.02 2.49 16
37 H 0.10 1.13 7.21 -2.39 -0.02 1.11 16
38 H 0.05 0.72 7.55 -2.39 -0.02 0.70 16
39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16
40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
41 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16
42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16
44 H 0.10 1.31 6.86 -2.39 -0.02 1.29 16
45 H 0.14 1.89 5.81 -2.91 -0.02 1.88 16
46 H 0.14 1.96 8.03 -2.91 -0.02 1.94 16
47 H 0.08 2.19 7.74 -2.39 -0.02 2.17 16
48 H 0.08 1.83 8.00 -2.39 -0.02 1.81 16
49 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16
50 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16
51 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16
Total: -1.00 -67.11 408.46 1.33 -65.79
By element:
Atomic # 1 Polarization: 12.29 SS G_CDS: 0.91 Total: 13.20 kcal
Atomic # 6 Polarization: -17.69 SS G_CDS: 6.73 Total: -10.97 kcal
Atomic # 7 Polarization: -99.00 SS G_CDS: -6.73 Total: -105.72 kcal
Atomic # 8 Polarization: -6.25 SS G_CDS: -1.61 Total: -7.86 kcal
Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal
Total: -67.11 1.33 -65.79 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000764864533.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.712 kcal
(2) G-P(sol) polarization free energy of solvation -67.114 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.402 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.786 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.074 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds