Wall clock time and date at job start Sat Apr 11 2020 07:02:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 N 1.30238 * 126.17119 * 2 1
4 4 N 1.39834 * 110.09058 * 180.15098 * 3 2 1
5 5 C 1.46496 * 125.38670 * 179.84050 * 4 3 2
6 6 C 1.36823 * 109.22078 * 359.57356 * 4 3 2
7 7 N 1.32762 * 133.57175 * 180.25933 * 6 4 3
8 8 C 1.31511 * 121.47402 * 179.97438 * 7 6 4
9 9 C 1.38809 * 121.58431 * 0.02562 * 8 7 6
10 10 C 1.50700 * 120.17379 * 179.97438 * 9 8 7
11 11 N 1.46900 * 109.46928 * 90.00651 * 10 9 8
12 12 C 1.46900 * 110.99561 * 294.29381 * 11 10 9
13 13 C 1.53247 * 109.33856 * 172.74754 * 12 11 10
14 14 H 1.09000 * 109.62877 * 294.12572 * 13 12 11
15 15 C 1.52999 * 109.78975 * 173.63681 * 13 12 11
16 16 N 1.47083 * 108.51721 * 53.83434 * 13 12 11
17 17 C 1.36936 * 120.88033 * 128.83687 * 16 13 12
18 18 H 1.08004 * 119.99797 * 331.85987 * 17 16 13
19 19 C 1.38805 * 119.99938 * 151.85087 * 17 16 13
20 20 N 1.31622 * 120.00435 * 342.77169 * 19 17 16
21 21 Si 1.86805 * 120.00127 * 162.76710 * 19 17 16
22 22 H 1.48500 * 109.46749 * 0.02562 * 21 19 17
23 23 H 1.48495 * 109.47360 * 120.00287 * 21 19 17
24 24 H 1.48500 * 109.47286 * 240.00764 * 21 19 17
25 25 C 1.47080 * 118.23809 * 308.81280 * 16 13 12
26 26 H 1.08991 * 109.62694 * 170.89574 * 25 16 13
27 27 C 1.52996 * 109.62871 * 291.47871 * 25 16 13
28 28 C 1.46901 * 111.00001 * 170.00263 * 11 10 9
29 29 C 1.37015 * 119.64708 * 359.97438 * 9 8 7
30 30 C 1.39996 * 118.15866 * 0.02562 * 29 9 8
31 31 H 1.08998 * 109.47228 * 270.30698 * 1 2 3
32 32 H 1.09006 * 109.46746 * 30.30716 * 1 2 3
33 33 H 1.08997 * 109.47051 * 150.30075 * 1 2 3
34 34 H 1.09002 * 109.47394 * 269.69518 * 5 4 3
35 35 H 1.09000 * 109.47420 * 29.69439 * 5 4 3
36 36 H 1.08999 * 109.47224 * 149.69284 * 5 4 3
37 37 H 1.07995 * 119.20966 * 180.02562 * 8 7 6
38 38 H 1.09004 * 109.46747 * 210.00116 * 10 9 8
39 39 H 1.08993 * 109.47138 * 330.00388 * 10 9 8
40 40 H 1.08991 * 109.49881 * 292.71192 * 12 11 10
41 41 H 1.09003 * 109.49398 * 52.79684 * 12 11 10
42 42 H 1.08993 * 109.47105 * 296.62636 * 15 13 12
43 43 H 1.09008 * 109.46690 * 56.62369 * 15 13 12
44 44 H 1.08992 * 109.47047 * 176.62230 * 15 13 12
45 45 H 0.97002 * 120.00462 * 175.11966 * 20 19 17
46 46 H 1.09007 * 109.47138 * 179.02911 * 27 25 16
47 47 H 1.09004 * 109.47341 * 299.02740 * 27 25 16
48 48 H 1.08995 * 109.47397 * 59.03208 * 27 25 16
49 49 H 1.09000 * 109.48948 * 307.20844 * 28 11 10
50 50 H 1.08996 * 109.49766 * 67.25730 * 28 11 10
51 51 H 1.08003 * 120.92079 * 179.97438 * 29 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2757 1.0514 0.0000
4 7 3.6194 0.6640 -0.0035
5 6 4.7653 1.5766 -0.0078
6 6 3.6943 -0.7021 0.0039
7 7 4.7049 -1.5631 0.0088
8 6 4.5002 -2.8622 0.0162
9 6 3.2189 -3.3962 0.0186
10 6 3.0210 -4.8901 0.0266
11 7 2.9562 -5.3681 1.4141
12 6 4.2419 -5.1751 2.0980
13 6 4.0825 -5.5150 3.5837
14 1 3.4109 -4.7966 4.0537
15 6 5.4470 -5.4710 4.2745
16 7 3.5156 -6.8676 3.6953
17 6 4.1036 -7.8124 4.4933
18 1 5.1661 -7.7737 4.6828
19 6 3.3339 -8.8197 5.0586
20 7 2.0254 -8.6920 5.1208
21 14 4.1551 -10.3568 5.7313
22 1 5.6246 -10.2557 5.5426
23 1 3.8502 -10.4880 7.1786
24 1 3.6436 -11.5484 5.0076
25 6 2.3002 -7.1783 2.9275
26 1 2.0956 -8.2474 2.9827
27 6 1.1171 -6.3942 3.4986
28 6 2.5299 -6.7729 1.4677
29 6 2.1352 -2.5579 0.0138
30 6 2.3679 -1.1774 0.0060
31 1 -0.3633 0.0055 1.0276
32 1 -0.3633 0.8873 -0.5186
33 1 -0.3633 -0.8926 -0.5091
34 1 5.0500 1.7976 -1.0365
35 1 4.4949 2.5019 0.5010
36 1 5.6037 1.1096 0.5089
37 1 5.3493 -3.5295 0.0204
38 1 2.0912 -5.1361 -0.4863
39 1 3.8557 -5.3699 -0.4843
40 1 4.9920 -5.8292 1.6537
41 1 4.5568 -4.1367 1.9942
42 1 6.0947 -6.2372 3.8486
43 1 5.8982 -4.4899 4.1254
44 1 5.3202 -5.6543 5.3414
45 1 1.4816 -9.4245 5.4506
46 1 0.2214 -6.6131 2.9171
47 1 0.9560 -6.6845 4.5369
48 1 1.3306 -5.3266 3.4488
49 1 1.6031 -6.8933 0.9067
50 1 3.3036 -7.4047 1.0316
51 1 1.1293 -2.9511 0.0152
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000878774201.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:01
Heat of formation + Delta-G solvation = 136.749968 kcal
Electronic energy + Delta-G solvation = -30961.401755 eV
Core-core repulsion = 27091.233701 eV
Total energy + Delta-G solvation = -3870.168054 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.207 amu
Computer time = 1.43 seconds
Orbital eigenvalues (eV)
-41.66790 -39.05333 -37.92374 -35.09295 -34.35984 -32.53199 -32.27641 -31.17039
-30.19790 -29.69111 -27.90152 -26.69979 -26.11869 -25.03438 -24.08802 -23.81828
-22.46406 -21.06284 -20.66249 -19.90053 -18.56381 -17.52249 -16.99429 -16.27307
-16.09202 -15.98843 -15.28676 -14.72622 -14.48656 -14.36590 -13.84843 -13.79559
-13.75058 -13.52500 -13.42317 -13.16961 -13.06512 -12.97135 -12.89268 -12.51141
-12.20893 -11.97871 -11.87603 -11.76442 -11.54026 -11.16894 -10.98553 -10.90174
-10.86109 -10.58772 -10.50770 -10.40410 -10.33626 -10.00660 -9.88661 -9.51862
-9.44767 -9.16220 -9.00080 -8.44255 -8.19904 -7.75125 -6.59840 -5.70938
-3.16557 0.71684 1.24519 2.03108 2.28250 3.38739 3.47877 3.48840
3.66182 3.98079 4.16664 4.37968 4.49477 4.56275 4.70705 4.93877
4.96909 5.03132 5.11761 5.13650 5.27914 5.32779 5.34659 5.40254
5.42883 5.56431 5.65269 5.67024 5.71517 5.84179 5.95007 6.10975
6.15721 6.19105 6.22890 6.30661 6.36732 6.37264 6.45453 6.47655
6.65307 6.73375 6.86830 6.99376 7.06237 7.11905 7.27126 7.35726
7.53273 7.59780 7.76118 7.83786 7.87653 8.00369 8.49350 9.28041
9.89927 10.48777 11.33854
Molecular weight = 343.21amu
Principal moments of inertia in cm(-1)
A = 0.019430 B = 0.002738 C = 0.002599
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1440.743886 B =10223.754685 C =10771.823273
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.110 3.890
3 N -0.248 5.248
4 N -0.400 5.400
5 C 0.116 3.884
6 C 0.310 3.690
7 N -0.506 5.506
8 C 0.180 3.820
9 C -0.161 4.161
10 C 0.101 3.899
11 N -0.524 5.524
12 C 0.047 3.953
13 C 0.172 3.828
14 H 0.031 0.969
15 C -0.137 4.137
16 N -0.585 5.585
17 C -0.246 4.246
18 H 0.070 0.930
19 C 0.002 3.998
20 N -0.896 5.896
21 Si 0.894 3.106
22 H -0.280 1.280
23 H -0.292 1.292
24 H -0.291 1.291
25 C 0.200 3.800
26 H 0.091 0.909
27 C -0.136 4.136
28 C 0.042 3.958
29 C 0.026 3.974
30 C -0.224 4.224
31 H 0.085 0.915
32 H 0.078 0.922
33 H 0.083 0.917
34 H 0.067 0.933
35 H 0.085 0.915
36 H 0.088 0.912
37 H 0.161 0.839
38 H 0.080 0.920
39 H 0.039 0.961
40 H 0.028 0.972
41 H 0.060 0.940
42 H 0.054 0.946
43 H 0.037 0.963
44 H 0.060 0.940
45 H 0.250 0.750
46 H 0.019 0.981
47 H 0.074 0.926
48 H 0.033 0.967
49 H 0.061 0.939
50 H 0.025 0.975
51 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.152 15.201 -13.163 20.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.069 4.069
3 N -0.062 5.062
4 N -0.191 5.191
5 C -0.026 4.026
6 C 0.072 3.928
7 N -0.220 5.220
8 C 0.011 3.989
9 C -0.165 4.165
10 C -0.028 4.028
11 N -0.249 5.249
12 C -0.082 4.082
13 C 0.065 3.935
14 H 0.048 0.952
15 C -0.195 4.195
16 N -0.308 5.308
17 C -0.375 4.375
18 H 0.087 0.913
19 C -0.196 4.196
20 N -0.540 5.540
21 Si 0.724 3.276
22 H -0.205 1.205
23 H -0.219 1.219
24 H -0.218 1.218
25 C 0.093 3.907
26 H 0.108 0.892
27 C -0.195 4.195
28 C -0.087 4.087
29 C -0.003 4.003
30 C -0.234 4.234
31 H 0.104 0.896
32 H 0.097 0.903
33 H 0.102 0.898
34 H 0.086 0.914
35 H 0.103 0.897
36 H 0.107 0.893
37 H 0.178 0.822
38 H 0.098 0.902
39 H 0.057 0.943
40 H 0.047 0.953
41 H 0.078 0.922
42 H 0.073 0.927
43 H 0.056 0.944
44 H 0.079 0.921
45 H 0.060 0.940
46 H 0.038 0.962
47 H 0.093 0.907
48 H 0.052 0.948
49 H 0.079 0.921
50 H 0.043 0.957
51 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 0.444 17.202 -12.777 21.432
hybrid contribution 0.312 -2.396 -0.039 2.417
sum 0.757 14.805 -12.816 19.596
Atomic orbital electron populations
1.20277 0.85351 1.03876 1.03821 1.23483 0.96740 0.88500 0.98138
1.76622 0.86475 1.22997 1.20122 1.47931 1.04266 1.01619 1.65240
1.21740 0.84845 0.93090 1.02894 1.18978 0.90548 0.86075 0.97208
1.66775 1.33279 1.02895 1.19031 1.22652 0.96498 0.89166 0.90591
1.20286 0.93552 0.97139 1.05560 1.20899 1.01254 0.89120 0.91511
1.61987 1.29977 1.20854 1.12046 1.22717 0.89162 0.98957 0.97369
1.20441 0.93413 0.88704 0.90893 0.95160 1.21792 0.96998 0.99202
1.01525 1.44286 1.28986 1.06642 1.50869 1.19240 0.91617 1.04779
1.21889 0.91252 1.24987 0.95536 1.00653 0.98459 1.70071 1.03481
1.30539 1.49944 0.86362 0.78904 0.83995 0.78321 1.20472 1.21928
1.21781 1.20343 0.86236 0.99400 0.84706 0.89161 1.21966 0.96283
0.98694 1.02565 1.22876 0.98144 0.86219 1.01442 1.20603 0.99788
0.89504 0.90379 1.20375 0.93489 0.94828 1.14672 0.89601 0.90278
0.89789 0.91437 0.89662 0.89322 0.82161 0.90151 0.94289 0.95349
0.92210 0.92743 0.94368 0.92070 0.93977 0.96168 0.90701 0.94802
0.92089 0.95696 0.84232
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.58 10.48 36.01 0.38 -0.20 16
2 C 0.11 1.32 7.44 -80.22 -0.60 0.72 16
3 N -0.25 -3.27 12.40 34.82 0.43 -2.84 16
4 N -0.40 -5.28 4.04 -67.21 -0.27 -5.55 16
5 C 0.12 1.06 11.44 59.84 0.68 1.74 16
6 C 0.31 4.48 7.97 -156.12 -1.24 3.23 16
7 N -0.51 -7.23 10.40 -12.34 -0.13 -7.36 16
8 C 0.18 2.33 9.00 -17.48 -0.16 2.17 16
9 C -0.16 -2.05 4.86 -104.85 -0.51 -2.56 16
10 C 0.10 1.30 5.13 -4.98 -0.03 1.28 16
11 N -0.52 -8.66 4.12 -235.76 -0.97 -9.63 16
12 C 0.05 0.82 4.64 -3.70 -0.02 0.81 16
13 C 0.17 3.57 3.24 -67.49 -0.22 3.35 16
14 H 0.03 0.69 7.60 -51.93 -0.39 0.30 16
15 C -0.14 -2.59 7.96 37.16 0.30 -2.30 16
16 N -0.58 -13.94 2.72 -157.01 -0.43 -14.37 16
17 C -0.25 -6.42 8.71 -15.06 -0.13 -6.56 16
18 H 0.07 1.80 6.17 -52.48 -0.32 1.47 16
19 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16
20 N -0.90 -24.78 9.81 55.49 0.54 -24.24 16
21 Si 0.89 21.25 29.59 -169.99 -5.03 16.22 16
22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
25 C 0.20 4.49 2.35 -67.49 -0.16 4.34 16
26 H 0.09 2.31 6.25 -51.93 -0.32 1.99 16
27 C -0.14 -3.01 8.98 37.16 0.33 -2.68 16
28 C 0.04 0.77 5.01 -3.70 -0.02 0.75 16
29 C 0.03 0.32 9.83 -39.37 -0.39 -0.06 16
30 C -0.22 -3.01 6.35 -105.19 -0.67 -3.67 16
31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16
34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
37 H 0.16 1.79 7.92 -52.49 -0.42 1.38 16
38 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16
39 H 0.04 0.48 8.07 -51.93 -0.42 0.06 16
40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
41 H 0.06 0.97 5.66 -51.93 -0.29 0.67 16
42 H 0.05 1.04 7.32 -51.93 -0.38 0.66 16
43 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16
44 H 0.06 1.23 7.79 -51.93 -0.40 0.83 16
45 H 0.25 6.77 8.32 -40.82 -0.34 6.43 16
46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
47 H 0.07 1.91 6.77 -51.93 -0.35 1.55 16
48 H 0.03 0.73 7.06 -51.93 -0.37 0.37 16
49 H 0.06 1.00 7.99 -51.93 -0.41 0.59 16
50 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
51 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16
LS Contribution 397.01 15.07 5.98 5.98
Total: -1.00 -30.98 397.01 -10.68 -41.67
By element:
Atomic # 1 Polarization: 8.08 SS G_CDS: -8.29 Total: -0.20 kcal
Atomic # 6 Polarization: 2.85 SS G_CDS: -2.53 Total: 0.33 kcal
Atomic # 7 Polarization: -63.16 SS G_CDS: -0.82 Total: -63.99 kcal
Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -30.98 -10.68 -41.67 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000878774201.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 178.415 kcal
(2) G-P(sol) polarization free energy of solvation -30.981 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.434 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) 136.750 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.43 seconds