Wall clock time and date at job start Sat Apr 11 2020 07:02:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 N 1.30238 * 126.17119 * 2 1
4 4 N 1.39834 * 110.09058 * 180.15098 * 3 2 1
5 5 C 1.46496 * 125.38670 * 179.84050 * 4 3 2
6 6 C 1.36823 * 109.22078 * 359.57356 * 4 3 2
7 7 N 1.32762 * 133.57175 * 180.25933 * 6 4 3
8 8 C 1.31511 * 121.47402 * 179.97438 * 7 6 4
9 9 C 1.38809 * 121.58431 * 0.02562 * 8 7 6
10 10 C 1.50700 * 120.17379 * 179.97438 * 9 8 7
11 11 N 1.46900 * 109.46928 * 90.00651 * 10 9 8
12 12 C 1.46900 * 110.99561 * 294.29381 * 11 10 9
13 13 C 1.53247 * 109.33856 * 172.74754 * 12 11 10
14 14 H 1.09000 * 109.62877 * 294.12572 * 13 12 11
15 15 C 1.52999 * 109.78975 * 173.63681 * 13 12 11
16 16 N 1.47083 * 108.51721 * 53.83434 * 13 12 11
17 17 C 1.36936 * 120.88033 * 128.83687 * 16 13 12
18 18 H 1.08004 * 119.99797 * 331.85987 * 17 16 13
19 19 C 1.38805 * 119.99938 * 151.85087 * 17 16 13
20 20 N 1.31622 * 120.00435 * 342.77169 * 19 17 16
21 21 Si 1.86805 * 120.00127 * 162.76710 * 19 17 16
22 22 H 1.48500 * 109.46749 * 0.02562 * 21 19 17
23 23 H 1.48495 * 109.47360 * 120.00287 * 21 19 17
24 24 H 1.48500 * 109.47286 * 240.00764 * 21 19 17
25 25 C 1.47080 * 118.23809 * 308.81280 * 16 13 12
26 26 H 1.08991 * 109.62694 * 170.89574 * 25 16 13
27 27 C 1.52996 * 109.62871 * 291.47871 * 25 16 13
28 28 C 1.46901 * 111.00001 * 170.00263 * 11 10 9
29 29 C 1.37015 * 119.64708 * 359.97438 * 9 8 7
30 30 C 1.39996 * 118.15866 * 0.02562 * 29 9 8
31 31 H 1.08998 * 109.47228 * 270.30698 * 1 2 3
32 32 H 1.09006 * 109.46746 * 30.30716 * 1 2 3
33 33 H 1.08997 * 109.47051 * 150.30075 * 1 2 3
34 34 H 1.09002 * 109.47394 * 269.69518 * 5 4 3
35 35 H 1.09000 * 109.47420 * 29.69439 * 5 4 3
36 36 H 1.08999 * 109.47224 * 149.69284 * 5 4 3
37 37 H 1.07995 * 119.20966 * 180.02562 * 8 7 6
38 38 H 1.09004 * 109.46747 * 210.00116 * 10 9 8
39 39 H 1.08993 * 109.47138 * 330.00388 * 10 9 8
40 40 H 1.08991 * 109.49881 * 292.71192 * 12 11 10
41 41 H 1.09003 * 109.49398 * 52.79684 * 12 11 10
42 42 H 1.08993 * 109.47105 * 296.62636 * 15 13 12
43 43 H 1.09008 * 109.46690 * 56.62369 * 15 13 12
44 44 H 1.08992 * 109.47047 * 176.62230 * 15 13 12
45 45 H 0.97002 * 120.00462 * 175.11966 * 20 19 17
46 46 H 1.09007 * 109.47138 * 179.02911 * 27 25 16
47 47 H 1.09004 * 109.47341 * 299.02740 * 27 25 16
48 48 H 1.08995 * 109.47397 * 59.03208 * 27 25 16
49 49 H 1.09000 * 109.48948 * 307.20844 * 28 11 10
50 50 H 1.08996 * 109.49766 * 67.25730 * 28 11 10
51 51 H 1.08003 * 120.92079 * 179.97438 * 29 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2757 1.0514 0.0000
4 7 3.6194 0.6640 -0.0035
5 6 4.7653 1.5766 -0.0078
6 6 3.6943 -0.7021 0.0039
7 7 4.7049 -1.5631 0.0088
8 6 4.5002 -2.8622 0.0162
9 6 3.2189 -3.3962 0.0186
10 6 3.0210 -4.8901 0.0266
11 7 2.9562 -5.3681 1.4141
12 6 4.2419 -5.1751 2.0980
13 6 4.0825 -5.5150 3.5837
14 1 3.4109 -4.7966 4.0537
15 6 5.4470 -5.4710 4.2745
16 7 3.5156 -6.8676 3.6953
17 6 4.1036 -7.8124 4.4933
18 1 5.1661 -7.7737 4.6828
19 6 3.3339 -8.8197 5.0586
20 7 2.0254 -8.6920 5.1208
21 14 4.1551 -10.3568 5.7313
22 1 5.6246 -10.2557 5.5426
23 1 3.8502 -10.4880 7.1786
24 1 3.6436 -11.5484 5.0076
25 6 2.3002 -7.1783 2.9275
26 1 2.0956 -8.2474 2.9827
27 6 1.1171 -6.3942 3.4986
28 6 2.5299 -6.7729 1.4677
29 6 2.1352 -2.5579 0.0138
30 6 2.3679 -1.1774 0.0060
31 1 -0.3633 0.0055 1.0276
32 1 -0.3633 0.8873 -0.5186
33 1 -0.3633 -0.8926 -0.5091
34 1 5.0500 1.7976 -1.0365
35 1 4.4949 2.5019 0.5010
36 1 5.6037 1.1096 0.5089
37 1 5.3493 -3.5295 0.0204
38 1 2.0912 -5.1361 -0.4863
39 1 3.8557 -5.3699 -0.4843
40 1 4.9920 -5.8292 1.6537
41 1 4.5568 -4.1367 1.9942
42 1 6.0947 -6.2372 3.8486
43 1 5.8982 -4.4899 4.1254
44 1 5.3202 -5.6543 5.3414
45 1 1.4816 -9.4245 5.4506
46 1 0.2214 -6.6131 2.9171
47 1 0.9560 -6.6845 4.5369
48 1 1.3306 -5.3266 3.4488
49 1 1.6031 -6.8933 0.9067
50 1 3.3036 -7.4047 1.0316
51 1 1.1293 -2.9511 0.0152
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000878774201.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:00
Heat of formation + Delta-G solvation = 118.982756 kcal
Electronic energy + Delta-G solvation = -30962.172199 eV
Core-core repulsion = 27091.233701 eV
Total energy + Delta-G solvation = -3870.938498 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.207 amu
Computer time = 1.43 seconds
Orbital eigenvalues (eV)
-42.59384 -40.32897 -39.13929 -36.49803 -35.30184 -34.21857 -33.62608 -32.54601
-31.32021 -30.39886 -29.64217 -27.91595 -27.49464 -26.20432 -25.64379 -24.87652
-23.77388 -22.31476 -22.16696 -20.78163 -20.30322 -18.42194 -18.07334 -17.87193
-17.15862 -16.98199 -16.86122 -16.24475 -15.83365 -15.64137 -15.56578 -15.02608
-14.76337 -14.59752 -14.44374 -14.32174 -14.15234 -14.06146 -13.70798 -13.58875
-13.44981 -13.23251 -13.16522 -13.01943 -12.83905 -12.74038 -12.66487 -12.41405
-12.25865 -12.18824 -12.11456 -11.93071 -11.79741 -11.58672 -11.32838 -11.19402
-10.90375 -10.47239 -10.40291 -9.96555 -9.20926 -9.02659 -8.49918 -7.71383
-5.18752 -0.21207 0.26814 1.18936 1.38411 1.47853 1.51836 1.59623
2.58039 2.65190 3.13353 3.25712 3.29942 3.40127 3.53482 3.66660
3.76551 4.02259 4.17351 4.20190 4.29710 4.33826 4.36696 4.40044
4.48239 4.60669 4.63139 4.66596 4.67293 4.74650 4.80684 4.82384
4.85534 4.87924 4.89768 4.91672 5.02279 5.06008 5.14265 5.30625
5.35039 5.38080 5.38781 5.43868 5.56682 5.61143 5.75370 5.82434
5.84754 6.08534 6.30144 6.37519 6.44346 6.53313 6.88198 7.30034
7.99906 8.53456 9.30256
Molecular weight = 343.21amu
Principal moments of inertia in cm(-1)
A = 0.019430 B = 0.002738 C = 0.002599
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1440.743886 B =10223.754685 C =10771.823273
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.110 3.890
3 N -0.270 5.270
4 N -0.409 5.409
5 C 0.109 3.891
6 C 0.288 3.712
7 N -0.523 5.523
8 C 0.175 3.825
9 C -0.167 4.167
10 C 0.107 3.893
11 N -0.531 5.531
12 C 0.062 3.938
13 C 0.165 3.835
14 H 0.008 0.992
15 C -0.129 4.129
16 N -0.599 5.599
17 C -0.247 4.247
18 H 0.069 0.931
19 C -0.047 4.047
20 N -0.920 5.920
21 Si 0.950 3.050
22 H -0.272 1.272
23 H -0.300 1.300
24 H -0.293 1.293
25 C 0.196 3.804
26 H 0.054 0.946
27 C -0.118 4.118
28 C 0.056 3.944
29 C 0.031 3.969
30 C -0.242 4.242
31 H 0.094 0.906
32 H 0.090 0.910
33 H 0.102 0.898
34 H 0.079 0.921
35 H 0.099 0.901
36 H 0.089 0.911
37 H 0.176 0.824
38 H 0.100 0.900
39 H 0.051 0.949
40 H 0.028 0.972
41 H 0.076 0.924
42 H 0.051 0.949
43 H 0.068 0.932
44 H 0.039 0.961
45 H 0.244 0.756
46 H 0.039 0.961
47 H 0.034 0.966
48 H 0.034 0.966
49 H 0.085 0.915
50 H 0.019 0.981
51 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.129 15.992 -14.933 21.881
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.068 4.068
3 N -0.085 5.085
4 N -0.200 5.200
5 C -0.031 4.031
6 C 0.049 3.951
7 N -0.238 5.238
8 C 0.007 3.993
9 C -0.171 4.171
10 C -0.021 4.021
11 N -0.255 5.255
12 C -0.067 4.067
13 C 0.059 3.941
14 H 0.025 0.975
15 C -0.187 4.187
16 N -0.323 5.323
17 C -0.378 4.378
18 H 0.087 0.913
19 C -0.243 4.243
20 N -0.566 5.566
21 Si 0.780 3.220
22 H -0.196 1.196
23 H -0.228 1.228
24 H -0.220 1.220
25 C 0.090 3.910
26 H 0.072 0.928
27 C -0.177 4.177
28 C -0.073 4.073
29 C 0.002 3.998
30 C -0.252 4.252
31 H 0.112 0.888
32 H 0.109 0.891
33 H 0.120 0.880
34 H 0.098 0.902
35 H 0.117 0.883
36 H 0.108 0.892
37 H 0.193 0.807
38 H 0.119 0.881
39 H 0.070 0.930
40 H 0.047 0.953
41 H 0.094 0.906
42 H 0.070 0.930
43 H 0.087 0.913
44 H 0.058 0.942
45 H 0.053 0.947
46 H 0.058 0.942
47 H 0.053 0.947
48 H 0.053 0.947
49 H 0.103 0.897
50 H 0.038 0.962
51 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 0.488 18.028 -14.570 23.185
hybrid contribution 0.303 -2.540 0.513 2.609
sum 0.791 15.488 -14.057 20.931
Atomic orbital electron populations
1.20462 0.82612 1.05404 1.04757 1.24124 0.98347 0.87645 0.96650
1.76599 0.86770 1.23770 1.21326 1.48282 1.04955 1.01755 1.65020
1.21959 0.84042 0.93137 1.03957 1.19326 0.91255 0.86781 0.97700
1.66794 1.33617 1.03428 1.19921 1.22961 0.97306 0.89048 0.90000
1.20264 0.93617 0.96969 1.06289 1.20918 1.02918 0.89011 0.89216
1.61898 1.29478 1.19507 1.14647 1.22462 0.89739 0.99718 0.94809
1.20605 0.93434 0.86567 0.93474 0.97459 1.21698 0.96242 1.00863
0.99874 1.44536 1.29395 1.07598 1.50788 1.19488 0.91734 1.05200
1.21362 0.91350 1.25605 0.96089 1.03048 0.99575 1.70223 1.04368
1.30712 1.51313 0.85466 0.78421 0.81074 0.76991 1.19623 1.22767
1.22020 1.20279 0.85902 0.97435 0.87430 0.92794 1.21738 0.97193
0.98416 1.00377 1.22568 0.99252 0.87233 0.98202 1.20877 1.00794
0.89077 0.89050 1.20680 0.93556 0.95716 1.15232 0.88766 0.89090
0.87957 0.90213 0.88258 0.89194 0.80672 0.88132 0.93038 0.95345
0.90611 0.93013 0.91316 0.94169 0.94686 0.94240 0.94672 0.94704
0.89683 0.96235 0.82072
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.97 10.48 71.24 0.75 -0.22 16
2 C 0.11 2.46 7.44 44.77 0.33 2.80 16
3 N -0.27 -6.84 12.40 -43.74 -0.54 -7.38 16
4 N -0.41 -10.44 4.04 -366.56 -1.48 -11.92 16
5 C 0.11 1.91 11.44 127.77 1.46 3.37 16
6 C 0.29 7.98 7.97 134.12 1.07 9.05 16
7 N -0.52 -14.24 10.40 -192.97 -2.01 -16.24 16
8 C 0.18 4.16 9.00 84.88 0.76 4.92 16
9 C -0.17 -3.78 4.86 -20.02 -0.10 -3.87 16
10 C 0.11 2.38 5.13 85.56 0.44 2.82 16
11 N -0.53 -16.11 4.12 -899.81 -3.71 -19.82 16
12 C 0.06 2.03 4.64 86.39 0.40 2.43 16
13 C 0.17 6.74 3.24 44.96 0.15 6.88 16
14 H 0.01 0.35 7.60 -2.39 -0.02 0.33 16
15 C -0.13 -4.76 7.96 71.98 0.57 -4.19 16
16 N -0.60 -28.69 2.72 -650.65 -1.77 -30.47 16
17 C -0.25 -13.08 8.71 84.03 0.73 -12.34 16
18 H 0.07 3.56 6.17 -2.91 -0.02 3.54 16
19 C -0.05 -2.58 4.91 84.86 0.42 -2.17 16
20 N -0.92 -52.35 9.81 21.65 0.21 -52.13 16
21 Si 0.95 44.44 29.59 68.60 2.03 46.47 16
22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16
23 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16
24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16
25 C 0.20 8.79 2.35 44.96 0.11 8.90 16
26 H 0.05 2.82 6.25 -2.39 -0.01 2.80 16
27 C -0.12 -5.23 8.98 71.98 0.65 -4.58 16
28 C 0.06 1.95 5.01 86.38 0.43 2.38 16
29 C 0.03 0.67 9.83 22.41 0.22 0.89 16
30 C -0.24 -6.06 6.35 -20.23 -0.13 -6.19 16
31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16
32 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16
33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16
34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16
35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16
36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
37 H 0.18 3.46 7.92 -2.91 -0.02 3.43 16
38 H 0.10 1.88 7.91 -2.38 -0.02 1.86 16
39 H 0.05 1.06 8.07 -2.39 -0.02 1.05 16
40 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16
41 H 0.08 2.25 5.66 -2.39 -0.01 2.23 16
42 H 0.05 1.92 7.32 -2.39 -0.02 1.90 16
43 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16
44 H 0.04 1.62 7.79 -2.39 -0.02 1.60 16
45 H 0.24 13.62 8.32 -92.71 -0.77 12.85 16
46 H 0.04 1.53 8.14 -2.38 -0.02 1.52 16
47 H 0.03 1.81 6.77 -2.38 -0.02 1.80 16
48 H 0.03 1.49 7.06 -2.39 -0.02 1.47 16
49 H 0.08 2.53 7.99 -2.39 -0.02 2.51 16
50 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16
51 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16
Total: -1.00 -68.34 397.01 1.91 -66.43
By element:
Atomic # 1 Polarization: 13.27 SS G_CDS: 0.92 Total: 14.19 kcal
Atomic # 6 Polarization: 2.61 SS G_CDS: 8.26 Total: 10.87 kcal
Atomic # 7 Polarization: -128.66 SS G_CDS: -9.30 Total: -137.96 kcal
Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal
Total: -68.34 1.91 -66.43 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000878774201.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 185.411 kcal
(2) G-P(sol) polarization free energy of solvation -68.336 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.074 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.428 kcal
(6) G-S(sol) free energy of system = (1) + (5) 118.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.43 seconds