Wall clock time and date at job start Sat Apr 11 2020 07:01:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.36941 * 120.00065 * 2 1
4 4 H 1.07995 * 120.00203 * 199.44026 * 3 2 1
5 5 C 1.38815 * 119.99565 * 19.44868 * 3 2 1
6 6 N 1.31612 * 120.00222 * 20.15112 * 5 3 2
7 7 Si 1.86806 * 119.99826 * 200.15031 * 5 3 2
8 8 H 1.48500 * 109.47071 * 0.02562 * 7 5 3
9 9 H 1.48498 * 109.47047 * 119.99485 * 7 5 3
10 10 H 1.48494 * 109.47316 * 240.00226 * 7 5 3
11 11 C 1.46499 * 120.00602 * 180.02562 * 2 1 3
12 12 C 1.53044 * 109.45689 * 300.00293 * 11 2 1
13 13 C 1.53188 * 109.31425 * 181.36840 * 12 11 2
14 14 N 1.46930 * 108.77355 * 305.36434 * 13 12 11
15 15 C 1.34780 * 120.62454 * 233.58354 * 14 13 12
16 16 O 1.21513 * 120.00430 * 10.46228 * 15 14 13
17 17 C 1.48173 * 119.99561 * 190.18552 * 15 14 13
18 18 C 1.39171 * 119.82041 * 188.79940 * 17 15 14
19 19 C 1.39000 * 119.25302 * 179.97438 * 18 17 15
20 20 C 1.37861 * 118.55498 * 359.78672 * 19 18 17
21 21 C 1.39117 * 119.07736 * 0.30003 * 20 19 18
22 22 N 1.31322 * 121.19744 * 359.54962 * 21 20 19
23 23 C 1.50506 * 122.48298 * 180.39595 * 20 19 18
24 24 C 1.52789 * 110.46778 * 342.09880 * 23 20 19
25 25 C 1.53310 * 108.50615 * 51.19010 * 24 23 20
26 26 C 1.50355 * 118.62569 * 179.44612 * 19 18 17
27 27 C 1.46918 * 118.73885 * 53.85882 * 14 13 12
28 28 C 1.53041 * 109.44778 * 60.05773 * 11 2 1
29 29 H 1.08995 * 109.46739 * 275.45652 * 1 2 3
30 30 H 1.08999 * 109.47086 * 35.45116 * 1 2 3
31 31 H 1.08995 * 109.46974 * 155.45367 * 1 2 3
32 32 H 0.97005 * 119.99748 * 179.97438 * 6 5 3
33 33 H 1.08990 * 109.46628 * 180.02562 * 11 2 1
34 34 H 1.08999 * 109.49821 * 61.41366 * 12 11 2
35 35 H 1.09006 * 109.52302 * 301.33254 * 12 11 2
36 36 H 1.09001 * 109.59055 * 185.57304 * 13 12 11
37 37 H 1.09006 * 109.70788 * 65.21506 * 13 12 11
38 38 H 1.08001 * 120.37365 * 0.02562 * 18 17 15
39 39 H 1.07999 * 119.40843 * 179.79389 * 21 20 19
40 40 H 1.09005 * 109.30632 * 102.40333 * 23 20 19
41 41 H 1.09001 * 109.30438 * 221.78951 * 23 20 19
42 42 H 1.08998 * 109.62986 * 170.89255 * 24 23 20
43 43 H 1.09004 * 109.62814 * 291.48156 * 24 23 20
44 44 H 1.08997 * 109.63681 * 49.88220 * 25 24 23
45 45 H 1.08992 * 109.63978 * 170.29621 * 25 24 23
46 46 H 1.08998 * 109.30201 * 283.09789 * 26 19 18
47 47 H 1.09007 * 109.29877 * 42.47484 * 26 19 18
48 48 H 1.09003 * 109.58872 * 65.93451 * 27 14 13
49 49 H 1.09004 * 109.58315 * 186.35304 * 27 14 13
50 50 H 1.09004 * 109.49861 * 298.57609 * 28 11 2
51 51 H 1.08992 * 109.50002 * 58.67444 * 28 11 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1835 1.2126 -0.3113
5 6 1.5149 2.3538 0.4003
6 7 0.4271 2.2917 1.1384
7 14 2.2049 4.0134 -0.1087
8 1 3.4251 3.8112 -0.9305
9 1 1.1893 4.7488 -0.9043
10 1 2.5485 4.7995 1.1034
11 6 2.1976 -1.2686 -0.0006
12 6 1.8277 -2.0715 1.2487
13 6 2.6210 -3.3819 1.2622
14 7 2.3845 -4.0909 -0.0027
15 6 1.9581 -5.3695 -0.0038
16 8 1.5844 -5.8863 1.0306
17 6 1.9392 -6.1430 -1.2674
18 6 1.3309 -7.3942 -1.3040
19 6 1.3195 -8.1095 -2.4958
20 6 1.9114 -7.5478 -3.6070
21 6 2.5026 -6.2933 -3.4969
22 7 2.4976 -5.6365 -2.3598
23 6 1.9424 -8.2400 -4.9431
24 6 1.6600 -9.7325 -4.7783
25 6 0.3786 -9.8970 -3.9529
26 6 0.6696 -9.4651 -2.5161
27 6 2.6274 -3.3817 -1.2662
28 6 1.8287 -2.0695 -1.2514
29 1 -0.3632 0.0977 1.0230
30 1 -0.3633 0.8371 -0.5961
31 1 -0.3633 -0.9348 -0.4269
32 1 -0.0162 3.1079 1.4184
33 1 3.2691 -1.0693 0.0000
34 1 0.7604 -2.2925 1.2364
35 1 2.0687 -1.4911 2.1394
36 1 2.2897 -4.0011 2.0958
37 1 3.6845 -3.1667 1.3670
38 1 0.8720 -7.8045 -0.4165
39 1 2.9707 -5.8498 -4.3632
40 1 1.1871 -7.8001 -5.5944
41 1 2.9253 -8.1070 -5.3951
42 1 1.5255 -10.1901 -5.7584
43 1 2.4930 -10.2078 -4.2602
44 1 -0.4095 -9.2710 -4.3712
45 1 0.0644 -10.9406 -3.9682
46 1 1.3355 -10.1910 -2.0495
47 1 -0.2645 -9.4252 -1.9556
48 1 3.6910 -3.1643 -1.3646
49 1 2.3002 -4.0009 -2.1015
50 1 0.7614 -2.2906 -1.2402
51 1 2.0708 -1.4876 -2.1406
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000985527145.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:21
Heat of formation + Delta-G solvation = 26.151456 kcal
Electronic energy + Delta-G solvation = -30336.749278 eV
Core-core repulsion = 26429.492562 eV
Total energy + Delta-G solvation = -3907.256716 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-41.27327 -39.61956 -37.49082 -37.10166 -35.00448 -33.18443 -32.33879 -31.59902
-30.50192 -29.90745 -29.44869 -25.95442 -25.46372 -24.61828 -23.85096 -23.08600
-22.63559 -22.05611 -20.69231 -19.64258 -18.61214 -17.47856 -16.75910 -16.57232
-16.18731 -15.66825 -15.42877 -15.16237 -14.93706 -14.90246 -14.35077 -14.13828
-13.89686 -13.77802 -13.50850 -13.37427 -13.16233 -13.08011 -12.91147 -12.62065
-12.48939 -12.21748 -12.04249 -11.70934 -11.42521 -11.38664 -11.20285 -11.02456
-10.89278 -10.74422 -10.71579 -10.37014 -10.19555 -10.15833 -10.06222 -9.77077
-9.72573 -9.58721 -9.20246 -8.94559 -8.46900 -8.30216 -6.71791 -5.67965
-3.08070 0.45891 0.91771 2.68307 3.10295 3.41133 3.48874 3.50987
3.64959 3.96950 4.14068 4.18470 4.40101 4.46499 4.48054 4.54678
4.69863 4.87890 4.97871 5.03128 5.15424 5.20761 5.35465 5.36854
5.40570 5.42544 5.46914 5.46994 5.51412 5.60613 5.63868 5.66571
5.77015 5.81868 5.86384 5.88013 5.99300 6.07582 6.24678 6.27327
6.38982 6.50413 6.58379 6.64581 6.75312 6.87757 7.08923 7.11391
7.41282 7.46501 7.65912 7.75971 7.86250 8.25212 8.43570 9.28183
9.94408 10.43316 11.37197
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.021725 B = 0.002303 C = 0.002192
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1288.519256 B =12156.374465 C =12768.530752
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.162 3.838
2 N -0.596 5.596
3 C -0.252 4.252
4 H 0.069 0.931
5 C -0.001 4.001
6 N -0.903 5.903
7 Si 0.899 3.101
8 H -0.279 1.279
9 H -0.290 1.290
10 H -0.292 1.292
11 C 0.178 3.822
12 C -0.143 4.143
13 C 0.111 3.889
14 N -0.583 5.583
15 C 0.567 3.433
16 O -0.545 6.545
17 C 0.080 3.920
18 C -0.111 4.111
19 C -0.041 4.041
20 C -0.111 4.111
21 C 0.096 3.904
22 N -0.445 5.445
23 C -0.079 4.079
24 C -0.121 4.121
25 C -0.121 4.121
26 C -0.084 4.084
27 C 0.082 3.918
28 C -0.147 4.147
29 H 0.028 0.972
30 H 0.037 0.963
31 H 0.001 0.999
32 H 0.251 0.749
33 H 0.062 0.938
34 H 0.058 0.942
35 H 0.075 0.925
36 H 0.084 0.916
37 H 0.066 0.934
38 H 0.147 0.853
39 H 0.163 0.837
40 H 0.082 0.918
41 H 0.081 0.919
42 H 0.071 0.929
43 H 0.067 0.933
44 H 0.068 0.932
45 H 0.071 0.929
46 H 0.084 0.916
47 H 0.082 0.918
48 H 0.062 0.938
49 H 0.135 0.865
50 H 0.057 0.943
51 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.575 -26.087 -12.696 29.126
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 N -0.317 5.317
3 C -0.382 4.382
4 H 0.087 0.913
5 C -0.199 4.199
6 N -0.548 5.548
7 Si 0.729 3.271
8 H -0.204 1.204
9 H -0.217 1.217
10 H -0.219 1.219
11 C 0.070 3.930
12 C -0.183 4.183
13 C -0.011 4.011
14 N -0.313 5.313
15 C 0.353 3.647
16 O -0.423 6.423
17 C -0.056 4.056
18 C -0.132 4.132
19 C -0.049 4.049
20 C -0.113 4.113
21 C -0.065 4.065
22 N -0.157 5.157
23 C -0.117 4.117
24 C -0.159 4.159
25 C -0.158 4.158
26 C -0.121 4.121
27 C -0.040 4.040
28 C -0.187 4.187
29 H 0.046 0.954
30 H 0.056 0.944
31 H 0.019 0.981
32 H 0.061 0.939
33 H 0.080 0.920
34 H 0.077 0.923
35 H 0.093 0.907
36 H 0.103 0.897
37 H 0.084 0.916
38 H 0.164 0.836
39 H 0.180 0.820
40 H 0.101 0.899
41 H 0.099 0.901
42 H 0.090 0.910
43 H 0.085 0.915
44 H 0.086 0.914
45 H 0.090 0.910
46 H 0.102 0.898
47 H 0.101 0.899
48 H 0.080 0.920
49 H 0.152 0.848
50 H 0.075 0.925
51 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 2.652 -25.333 -11.968 28.143
hybrid contribution -0.103 0.477 -0.159 0.514
sum 2.549 -24.855 -12.128 27.774
Atomic orbital electron populations
1.20713 0.82937 0.95320 0.99307 1.44019 1.01720 1.00334 1.85669
1.19252 0.96531 0.84731 1.37651 0.91312 1.24897 0.98383 0.98131
0.98529 1.70137 1.21648 1.26530 1.36486 0.86275 0.78231 0.84634
0.77978 1.20368 1.21721 1.21933 1.20319 0.95883 0.85917 0.90887
1.22489 0.99947 0.94349 1.01555 1.21776 0.99830 0.93986 0.85531
1.48017 1.63609 1.10881 1.08831 1.17881 0.78014 0.81856 0.86932
1.90748 1.48340 1.70407 1.32772 1.21183 0.97866 0.93528 0.92997
1.22094 0.98195 0.94085 0.98785 1.19872 0.96290 0.96523 0.92229
1.20736 0.98215 0.96171 0.96220 1.23027 0.96313 0.91153 0.95958
1.67688 1.16205 1.32659 0.99110 1.20453 1.03006 0.95217 0.93018
1.21573 0.98129 0.95573 1.00596 1.21574 0.97996 1.01737 0.94526
1.20499 1.00798 0.92532 0.98277 1.22980 1.00089 0.94304 0.86662
1.22572 0.99966 0.95312 1.00849 0.95354 0.94442 0.98096 0.93927
0.92000 0.92278 0.90665 0.89734 0.91552 0.83560 0.82031 0.89924
0.90052 0.91048 0.91459 0.91365 0.91015 0.89813 0.89929 0.91975
0.84830 0.92468 0.91007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 4.10 8.06 59.85 0.48 4.58 16
2 N -0.60 -15.08 2.81 -173.45 -0.49 -15.57 16
3 C -0.25 -6.99 9.59 -15.06 -0.14 -7.13 16
4 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16
5 C 0.00 -0.03 4.95 -17.43 -0.09 -0.12 16
6 N -0.90 -26.83 10.93 55.49 0.61 -26.22 16
7 Si 0.90 22.10 29.60 -169.99 -5.03 17.07 16
8 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
11 C 0.18 3.69 2.55 -67.89 -0.17 3.51 16
12 C -0.14 -2.76 5.34 -26.61 -0.14 -2.91 16
13 C 0.11 1.85 6.44 -3.71 -0.02 1.82 16
14 N -0.58 -9.50 2.97 -173.49 -0.51 -10.01 16
15 C 0.57 9.34 7.64 -12.18 -0.09 9.25 16
16 O -0.54 -10.18 15.81 5.35 0.08 -10.10 16
17 C 0.08 1.09 6.56 -83.05 -0.55 0.55 16
18 C -0.11 -1.27 9.26 -38.95 -0.36 -1.64 16
19 C -0.04 -0.37 5.74 -104.64 -0.60 -0.97 16
20 C -0.11 -0.90 5.75 -104.53 -0.60 -1.50 16
21 C 0.10 0.89 10.79 -17.44 -0.19 0.70 16
22 N -0.45 -5.47 6.18 -9.73 -0.06 -5.53 16
23 C -0.08 -0.41 5.71 -28.09 -0.16 -0.57 16
24 C -0.12 -0.55 5.97 -26.68 -0.16 -0.71 16
25 C -0.12 -0.59 5.98 -26.66 -0.16 -0.75 16
26 C -0.08 -0.53 5.71 -28.14 -0.16 -0.69 16
27 C 0.08 1.25 5.86 -3.49 -0.02 1.23 16
28 C -0.15 -2.62 5.34 -26.39 -0.14 -2.76 16
29 H 0.03 0.78 7.40 -51.93 -0.38 0.39 16
30 H 0.04 1.01 7.31 -51.93 -0.38 0.63 16
31 H 0.00 0.01 6.47 -51.93 -0.34 -0.32 16
32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16
33 H 0.06 1.29 7.84 -51.93 -0.41 0.88 16
34 H 0.06 1.22 7.72 -51.93 -0.40 0.82 16
35 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16
36 H 0.08 1.43 7.01 -51.93 -0.36 1.06 16
37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
38 H 0.15 1.64 7.67 -52.49 -0.40 1.24 16
39 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16
40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16
41 H 0.08 0.33 8.13 -51.93 -0.42 -0.09 16
42 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16
43 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16
44 H 0.07 0.36 8.10 -51.93 -0.42 -0.07 16
45 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
46 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16
47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
49 H 0.14 1.91 4.15 -78.36 -0.33 1.59 16
50 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16
51 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16
LS Contribution 390.96 15.07 5.89 5.89
Total: -1.00 -32.80 390.96 -11.17 -43.97
By element:
Atomic # 1 Polarization: 6.98 SS G_CDS: -8.39 Total: -1.40 kcal
Atomic # 6 Polarization: 5.18 SS G_CDS: -3.28 Total: 1.91 kcal
Atomic # 7 Polarization: -56.88 SS G_CDS: -0.46 Total: -57.34 kcal
Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal
Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -32.80 -11.17 -43.97 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000985527145.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.122 kcal
(2) G-P(sol) polarization free energy of solvation -32.797 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.325 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.174 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.151 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds