Wall clock time and date at job start Sat Apr 11 2020 07:02:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 C 1.34776 * 119.99838 * 2 1
4 4 O 1.21283 * 120.00289 * 185.57362 * 3 2 1
5 5 C 1.50702 * 120.00235 * 5.57836 * 3 2 1
6 6 C 1.50696 * 110.01416 * 296.26292 * 5 3 2
7 7 C 1.38682 * 120.42193 * 353.55987 * 6 5 3
8 8 C 1.38625 * 118.42400 * 179.78115 * 7 6 5
9 9 C 1.38232 * 119.15938 * 0.47442 * 8 7 6
10 10 N 1.31854 * 120.76276 * 359.77104 * 9 8 7
11 11 C 1.31888 * 121.72796 * 359.97438 * 10 9 8
12 12 C 1.53873 * 110.03350 * 57.65212 * 5 3 2
13 13 C 1.54260 * 106.64077 * 119.26333 * 12 5 3
14 14 C 1.54967 * 104.16109 * 336.44396 * 13 12 5
15 15 C 1.54263 * 110.03644 * 174.82187 * 5 3 2
16 16 C 1.46494 * 120.00449 * 180.02562 * 2 1 3
17 17 C 1.53785 * 113.61366 * 37.49435 * 16 2 1
18 18 C 1.53782 * 87.08204 * 220.02394 * 17 16 2
19 19 N 1.46508 * 113.60966 * 270.88102 * 18 17 16
20 20 C 1.36934 * 119.99898 * 252.49534 * 19 18 17
21 21 H 1.08001 * 120.00312 * 0.02562 * 20 19 18
22 22 C 1.38808 * 119.99780 * 180.02562 * 20 19 18
23 23 N 1.31620 * 120.00151 * 180.02562 * 22 20 19
24 24 Si 1.86806 * 120.00203 * 359.97438 * 22 20 19
25 25 H 1.48502 * 109.46717 * 89.99905 * 24 22 20
26 26 H 1.48493 * 109.47331 * 209.99954 * 24 22 20
27 27 H 1.48499 * 109.46927 * 330.00558 * 24 22 20
28 28 C 1.53782 * 113.61316 * 299.99798 * 16 2 1
29 29 H 1.08994 * 109.47725 * 95.46333 * 1 2 3
30 30 H 1.09001 * 109.47225 * 215.46644 * 1 2 3
31 31 H 1.09007 * 109.47312 * 335.45797 * 1 2 3
32 32 H 1.08002 * 120.78420 * 0.02579 * 7 6 5
33 33 H 1.07996 * 120.41847 * 180.26815 * 8 7 6
34 34 H 1.07997 * 119.61663 * 179.78611 * 9 8 7
35 35 H 1.07999 * 119.62035 * 180.02562 * 11 10 9
36 36 H 1.08997 * 110.03219 * 238.57350 * 12 5 3
37 37 H 1.09003 * 110.03414 * 359.95236 * 12 5 3
38 38 H 1.09005 * 110.48854 * 95.09484 * 13 12 5
39 39 H 1.09008 * 110.49068 * 217.73852 * 13 12 5
40 40 H 1.08996 * 110.72479 * 279.57265 * 14 13 12
41 41 H 1.09006 * 110.92359 * 156.29349 * 14 13 12
42 42 H 1.08999 * 110.48675 * 22.99788 * 15 5 3
43 43 H 1.08993 * 110.49065 * 145.51182 * 15 5 3
44 44 H 1.08999 * 112.85624 * 168.79722 * 16 2 1
45 45 H 1.08999 * 113.61468 * 334.56695 * 17 16 2
46 46 H 1.09001 * 113.61819 * 105.46934 * 17 16 2
47 47 H 1.08994 * 113.69294 * 139.99622 * 18 17 16
48 48 H 0.96995 * 119.99443 * 72.50284 * 19 18 17
49 49 H 0.97005 * 120.00337 * 179.97438 * 23 22 20
50 50 H 1.08998 * 113.61494 * 254.52761 * 28 16 2
51 51 H 1.09006 * 113.61559 * 25.35011 * 28 16 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1388 1.1672 0.0000
4 8 3.3473 1.1698 -0.1020
5 6 1.3906 2.4692 0.1269
6 6 0.4864 2.6626 -1.0630
7 6 0.5320 1.7787 -2.1307
8 6 -0.3214 1.9931 -3.2018
9 6 -1.1765 3.0788 -3.1748
10 7 -1.1892 3.9019 -2.1447
11 6 -0.3950 3.7259 -1.1066
12 6 0.5635 2.4777 1.4243
13 6 1.0851 3.6554 2.2731
14 6 2.5268 3.8873 1.7544
15 6 2.3863 3.6429 0.2314
16 6 2.1975 -1.2686 -0.0006
17 6 1.5374 -2.3608 -0.8587
18 6 1.9129 -3.3526 0.2549
19 7 3.2398 -3.9503 0.0854
20 6 3.3570 -5.2614 -0.2918
21 1 2.4713 -5.8548 -0.4648
22 6 4.6141 -5.8278 -0.4519
23 7 4.7268 -7.0879 -0.8150
24 14 6.1460 -4.8013 -0.1534
25 1 6.5489 -4.9162 1.2713
26 1 7.2473 -5.2918 -1.0203
27 1 5.8595 -3.3798 -0.4736
28 6 1.8955 -2.1549 1.2193
29 1 -0.3634 -0.0978 -1.0229
30 1 -0.3634 -0.8370 0.5963
31 1 -0.3634 0.9349 0.4269
32 1 1.2135 0.9408 -2.1259
33 1 -0.3159 1.3223 -4.0482
34 1 -1.8421 3.2549 -4.0069
35 1 -0.4340 4.4209 -0.2808
36 1 -0.4919 2.6224 1.1934
37 1 0.7025 1.5396 1.9619
38 1 0.4738 4.5432 2.1103
39 1 1.0974 3.3882 3.3299
40 1 3.2167 3.1699 2.1988
41 1 2.8526 4.9083 1.9534
42 1 3.3481 3.3669 -0.2009
43 1 1.9864 4.5277 -0.2637
44 1 3.2625 -1.1425 -0.1956
45 1 0.4624 -2.2291 -0.9818
46 1 2.0527 -2.5466 -1.8011
47 1 1.1392 -4.0917 0.4624
48 1 4.0351 -3.4172 0.2405
49 1 5.6053 -7.4837 -0.9272
50 1 2.6999 -2.1746 1.9546
51 1 0.9189 -1.9660 1.6653
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000999308448.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:29
Heat of formation + Delta-G solvation = 47.750142 kcal
Electronic energy + Delta-G solvation = -31422.078644 eV
Core-core repulsion = 27515.758517 eV
Total energy + Delta-G solvation = -3906.320127 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.77082 -39.88268 -38.74807 -37.15220 -35.21452 -33.38859 -32.64863 -31.95672
-30.45404 -29.09666 -28.56770 -27.19318 -25.29997 -25.00375 -23.89492 -23.35378
-22.71346 -21.21696 -20.98185 -19.08524 -18.44067 -18.08081 -17.63454 -17.01717
-16.74210 -16.11277 -15.87186 -15.29096 -15.26351 -14.82468 -14.63984 -14.36722
-14.16227 -13.77453 -13.60488 -13.21483 -13.20171 -13.03282 -12.80778 -12.73767
-12.51424 -12.21857 -12.15376 -12.00380 -11.93414 -11.71822 -11.36237 -11.26167
-11.19025 -10.95970 -10.92083 -10.78627 -10.40270 -10.33073 -10.04732 -10.00392
-9.81476 -9.64724 -9.47716 -9.23666 -8.97082 -8.56394 -7.35671 -5.82956
-3.19934 0.74467 0.96215 2.47870 2.90610 3.36420 3.40951 3.44392
3.44486 3.98925 4.06372 4.24611 4.25979 4.46663 4.54939 4.61130
4.65764 4.74074 4.84832 4.92749 4.95900 5.00188 5.09194 5.12172
5.15248 5.17898 5.25209 5.30968 5.34034 5.38678 5.40653 5.48003
5.57166 5.61166 5.63544 5.71115 5.75239 5.79283 5.83810 5.92936
5.94051 5.97199 6.05005 6.07455 6.23206 6.35299 6.39885 6.51631
6.60285 6.82442 7.36714 7.63630 7.93202 8.09697 8.36268 9.13479
9.86041 10.04345 11.34796
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.014972 B = 0.003070 C = 0.002819
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1869.730421 B = 9118.534520 C = 9929.101613
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.062 3.938
2 N -0.599 5.599
3 C 0.524 3.476
4 O -0.531 6.531
5 C -0.036 4.036
6 C -0.121 4.121
7 C -0.069 4.069
8 C -0.167 4.167
9 C 0.095 3.905
10 N -0.482 5.482
11 C 0.107 3.893
12 C -0.115 4.115
13 C -0.124 4.124
14 C -0.124 4.124
15 C -0.106 4.106
16 C 0.120 3.880
17 C -0.180 4.180
18 C 0.178 3.822
19 N -0.729 5.729
20 C -0.250 4.250
21 H 0.093 0.907
22 C 0.009 3.991
23 N -0.931 5.931
24 Si 0.881 3.119
25 H -0.283 1.283
26 H -0.289 1.289
27 H -0.275 1.275
28 C -0.169 4.169
29 H 0.057 0.943
30 H 0.074 0.926
31 H 0.081 0.919
32 H 0.137 0.863
33 H 0.137 0.863
34 H 0.156 0.844
35 H 0.155 0.845
36 H 0.078 0.922
37 H 0.077 0.923
38 H 0.069 0.931
39 H 0.070 0.930
40 H 0.071 0.929
41 H 0.071 0.929
42 H 0.089 0.911
43 H 0.073 0.927
44 H 0.115 0.885
45 H 0.076 0.924
46 H 0.073 0.927
47 H 0.077 0.923
48 H 0.363 0.637
49 H 0.261 0.739
50 H 0.069 0.931
51 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.933 24.905 2.106 28.615
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 N -0.330 5.330
3 C 0.311 3.689
4 O -0.408 6.408
5 C -0.040 4.040
6 C -0.123 4.123
7 C -0.095 4.095
8 C -0.186 4.186
9 C -0.062 4.062
10 N -0.191 5.191
11 C -0.050 4.050
12 C -0.152 4.152
13 C -0.161 4.161
14 C -0.161 4.161
15 C -0.143 4.143
16 C 0.018 3.982
17 C -0.222 4.222
18 C 0.066 3.934
19 N -0.369 5.369
20 C -0.379 4.379
21 H 0.110 0.890
22 C -0.187 4.187
23 N -0.578 5.578
24 Si 0.711 3.289
25 H -0.209 1.209
26 H -0.216 1.216
27 H -0.201 1.201
28 C -0.209 4.209
29 H 0.076 0.924
30 H 0.092 0.908
31 H 0.099 0.901
32 H 0.155 0.845
33 H 0.155 0.845
34 H 0.173 0.827
35 H 0.172 0.828
36 H 0.097 0.903
37 H 0.096 0.904
38 H 0.088 0.912
39 H 0.089 0.911
40 H 0.090 0.910
41 H 0.089 0.911
42 H 0.108 0.892
43 H 0.092 0.908
44 H 0.133 0.867
45 H 0.094 0.906
46 H 0.092 0.908
47 H 0.095 0.905
48 H 0.197 0.803
49 H 0.071 0.929
50 H 0.088 0.912
51 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -13.881 25.316 1.965 28.939
hybrid contribution 1.671 -0.233 0.008 1.687
sum -12.210 25.083 1.974 27.967
Atomic orbital electron populations
1.22187 0.80094 1.03631 1.02166 1.47908 1.06708 1.05917 1.72492
1.20263 0.87743 0.84954 0.75909 1.90698 1.14100 1.86889 1.49065
1.20359 0.95015 0.94757 0.93916 1.20554 0.98483 0.97268 0.95985
1.21782 0.97226 0.98133 0.92392 1.22178 0.97316 0.99602 0.99535
1.22793 0.96699 0.90578 0.96128 1.67735 1.21787 1.28523 1.01004
1.22526 0.91076 0.95193 0.96163 1.22454 0.98992 1.00290 0.93487
1.22419 0.96534 0.97731 0.99461 1.22516 0.96775 1.01869 0.94967
1.22441 0.99411 0.95146 0.97335 1.22803 0.97612 0.79853 0.97950
1.24255 0.99810 0.97215 1.00884 1.20840 0.89169 0.91466 0.91937
1.42558 1.01158 1.10840 1.82387 1.19081 0.94418 0.85420 1.39019
0.88962 1.24666 0.97109 0.95826 1.01145 1.69696 1.23157 1.11690
1.53214 0.86607 0.84220 0.80062 0.78045 1.20912 1.21552 1.20148
1.23975 1.01786 0.97624 0.97545 0.92418 0.90773 0.90099 0.84506
0.84527 0.82685 0.82770 0.90347 0.90444 0.91199 0.91115 0.91040
0.91054 0.89250 0.90843 0.86717 0.90566 0.90779 0.90512 0.80349
0.92924 0.91203 0.90011
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.58 6.79 59.84 0.41 0.98 16
2 N -0.60 -7.42 2.30 -173.01 -0.40 -7.82 16
3 C 0.52 7.01 4.91 -10.98 -0.05 6.96 16
4 O -0.53 -9.27 14.85 5.55 0.08 -9.18 16
5 C -0.04 -0.36 0.47 -155.70 -0.07 -0.43 16
6 C -0.12 -1.13 3.48 -104.48 -0.36 -1.50 16
7 C -0.07 -0.70 6.75 -39.27 -0.27 -0.96 16
8 C -0.17 -1.43 10.11 -39.44 -0.40 -1.82 16
9 C 0.09 0.80 11.18 -17.54 -0.20 0.60 16
10 N -0.48 -4.73 10.36 -13.25 -0.14 -4.87 16
11 C 0.11 0.95 9.25 -17.55 -0.16 0.78 16
12 C -0.11 -0.89 3.89 -25.62 -0.10 -0.99 16
13 C -0.12 -0.84 6.84 -25.03 -0.17 -1.01 16
14 C -0.12 -1.03 6.91 -24.69 -0.17 -1.20 16
15 C -0.11 -1.03 5.68 -25.07 -0.14 -1.17 16
16 C 0.12 1.83 4.10 -67.12 -0.28 1.56 16
17 C -0.18 -2.81 7.35 -25.92 -0.19 -3.00 16
18 C 0.18 3.25 4.56 -67.11 -0.31 2.94 16
19 N -0.73 -16.94 5.11 -52.63 -0.27 -17.21 16
20 C -0.25 -6.93 10.45 -15.06 -0.16 -7.08 16
21 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16
22 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16
23 N -0.93 -29.00 13.97 55.49 0.78 -28.22 16
24 Si 0.88 22.26 27.74 -169.99 -4.71 17.54 16
25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16
26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16
27 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16
28 C -0.17 -2.54 7.39 -25.92 -0.19 -2.73 16
29 H 0.06 0.52 6.49 -51.93 -0.34 0.19 16
30 H 0.07 0.64 6.59 -51.93 -0.34 0.30 16
31 H 0.08 0.65 3.52 -51.93 -0.18 0.46 16
32 H 0.14 1.60 5.90 -52.49 -0.31 1.29 16
33 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16
34 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16
35 H 0.16 1.07 7.84 -52.49 -0.41 0.66 16
36 H 0.08 0.50 6.39 -51.93 -0.33 0.17 16
37 H 0.08 0.67 6.91 -51.93 -0.36 0.31 16
38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
39 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16
40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
42 H 0.09 1.09 6.78 -51.93 -0.35 0.74 16
43 H 0.07 0.62 7.35 -51.93 -0.38 0.23 16
44 H 0.11 2.12 7.21 -51.93 -0.37 1.74 16
45 H 0.08 0.99 6.79 -51.93 -0.35 0.64 16
46 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16
47 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16
48 H 0.36 8.49 5.76 -40.82 -0.24 8.26 16
49 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16
50 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
51 H 0.08 1.02 6.86 -51.93 -0.36 0.66 16
LS Contribution 384.51 15.07 5.79 5.79
Total: -1.00 -33.12 384.51 -9.49 -42.61
By element:
Atomic # 1 Polarization: 16.98 SS G_CDS: -7.72 Total: 9.27 kcal
Atomic # 6 Polarization: -5.00 SS G_CDS: -2.91 Total: -7.91 kcal
Atomic # 7 Polarization: -58.09 SS G_CDS: -0.03 Total: -58.12 kcal
Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.18 kcal
Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -33.12 -9.49 -42.61 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999308448.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.365 kcal
(2) G-P(sol) polarization free energy of solvation -33.120 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.245 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.750 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds