Wall clock time and date at job start Sat Apr 11 2020 07:02:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 C 1.34776 * 119.99838 * 2 1
4 4 O 1.21283 * 120.00289 * 185.57362 * 3 2 1
5 5 C 1.50702 * 120.00235 * 5.57836 * 3 2 1
6 6 C 1.50696 * 110.01416 * 296.26292 * 5 3 2
7 7 C 1.38682 * 120.42193 * 353.55987 * 6 5 3
8 8 C 1.38625 * 118.42400 * 179.78115 * 7 6 5
9 9 C 1.38232 * 119.15938 * 0.47442 * 8 7 6
10 10 N 1.31854 * 120.76276 * 359.77104 * 9 8 7
11 11 C 1.31888 * 121.72796 * 359.97438 * 10 9 8
12 12 C 1.53873 * 110.03350 * 57.65212 * 5 3 2
13 13 C 1.54260 * 106.64077 * 119.26333 * 12 5 3
14 14 C 1.54967 * 104.16109 * 336.44396 * 13 12 5
15 15 C 1.54263 * 110.03644 * 174.82187 * 5 3 2
16 16 C 1.46494 * 120.00449 * 180.02562 * 2 1 3
17 17 C 1.53785 * 113.61366 * 37.49435 * 16 2 1
18 18 C 1.53782 * 87.08204 * 220.02394 * 17 16 2
19 19 N 1.46508 * 113.60966 * 270.88102 * 18 17 16
20 20 C 1.36934 * 119.99898 * 252.49534 * 19 18 17
21 21 H 1.08001 * 120.00312 * 0.02562 * 20 19 18
22 22 C 1.38808 * 119.99780 * 180.02562 * 20 19 18
23 23 N 1.31620 * 120.00151 * 180.02562 * 22 20 19
24 24 Si 1.86806 * 120.00203 * 359.97438 * 22 20 19
25 25 H 1.48502 * 109.46717 * 89.99905 * 24 22 20
26 26 H 1.48493 * 109.47331 * 209.99954 * 24 22 20
27 27 H 1.48499 * 109.46927 * 330.00558 * 24 22 20
28 28 C 1.53782 * 113.61316 * 299.99798 * 16 2 1
29 29 H 1.08994 * 109.47725 * 95.46333 * 1 2 3
30 30 H 1.09001 * 109.47225 * 215.46644 * 1 2 3
31 31 H 1.09007 * 109.47312 * 335.45797 * 1 2 3
32 32 H 1.08002 * 120.78420 * 0.02579 * 7 6 5
33 33 H 1.07996 * 120.41847 * 180.26815 * 8 7 6
34 34 H 1.07997 * 119.61663 * 179.78611 * 9 8 7
35 35 H 1.07999 * 119.62035 * 180.02562 * 11 10 9
36 36 H 1.08997 * 110.03219 * 238.57350 * 12 5 3
37 37 H 1.09003 * 110.03414 * 359.95236 * 12 5 3
38 38 H 1.09005 * 110.48854 * 95.09484 * 13 12 5
39 39 H 1.09008 * 110.49068 * 217.73852 * 13 12 5
40 40 H 1.08996 * 110.72479 * 279.57265 * 14 13 12
41 41 H 1.09006 * 110.92359 * 156.29349 * 14 13 12
42 42 H 1.08999 * 110.48675 * 22.99788 * 15 5 3
43 43 H 1.08993 * 110.49065 * 145.51182 * 15 5 3
44 44 H 1.08999 * 112.85624 * 168.79722 * 16 2 1
45 45 H 1.08999 * 113.61468 * 334.56695 * 17 16 2
46 46 H 1.09001 * 113.61819 * 105.46934 * 17 16 2
47 47 H 1.08994 * 113.69294 * 139.99622 * 18 17 16
48 48 H 0.96995 * 119.99443 * 72.50284 * 19 18 17
49 49 H 0.97005 * 120.00337 * 179.97438 * 23 22 20
50 50 H 1.08998 * 113.61494 * 254.52761 * 28 16 2
51 51 H 1.09006 * 113.61559 * 25.35011 * 28 16 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1388 1.1672 0.0000
4 8 3.3473 1.1698 -0.1020
5 6 1.3906 2.4692 0.1269
6 6 0.4864 2.6626 -1.0630
7 6 0.5320 1.7787 -2.1307
8 6 -0.3214 1.9931 -3.2018
9 6 -1.1765 3.0788 -3.1748
10 7 -1.1892 3.9019 -2.1447
11 6 -0.3950 3.7259 -1.1066
12 6 0.5635 2.4777 1.4243
13 6 1.0851 3.6554 2.2731
14 6 2.5268 3.8873 1.7544
15 6 2.3863 3.6429 0.2314
16 6 2.1975 -1.2686 -0.0006
17 6 1.5374 -2.3608 -0.8587
18 6 1.9129 -3.3526 0.2549
19 7 3.2398 -3.9503 0.0854
20 6 3.3570 -5.2614 -0.2918
21 1 2.4713 -5.8548 -0.4648
22 6 4.6141 -5.8278 -0.4519
23 7 4.7268 -7.0879 -0.8150
24 14 6.1460 -4.8013 -0.1534
25 1 6.5489 -4.9162 1.2713
26 1 7.2473 -5.2918 -1.0203
27 1 5.8595 -3.3798 -0.4736
28 6 1.8955 -2.1549 1.2193
29 1 -0.3634 -0.0978 -1.0229
30 1 -0.3634 -0.8370 0.5963
31 1 -0.3634 0.9349 0.4269
32 1 1.2135 0.9408 -2.1259
33 1 -0.3159 1.3223 -4.0482
34 1 -1.8421 3.2549 -4.0069
35 1 -0.4340 4.4209 -0.2808
36 1 -0.4919 2.6224 1.1934
37 1 0.7025 1.5396 1.9619
38 1 0.4738 4.5432 2.1103
39 1 1.0974 3.3882 3.3299
40 1 3.2167 3.1699 2.1988
41 1 2.8526 4.9083 1.9534
42 1 3.3481 3.3669 -0.2009
43 1 1.9864 4.5277 -0.2637
44 1 3.2625 -1.1425 -0.1956
45 1 0.4624 -2.2291 -0.9818
46 1 2.0527 -2.5466 -1.8011
47 1 1.1392 -4.0917 0.4624
48 1 4.0351 -3.4172 0.2405
49 1 5.6053 -7.4837 -0.9272
50 1 2.6999 -2.1746 1.9546
51 1 0.9189 -1.9660 1.6653
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000999308448.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:28
Heat of formation + Delta-G solvation = 27.416264 kcal
Electronic energy + Delta-G solvation = -31422.960387 eV
Core-core repulsion = 27515.758517 eV
Total energy + Delta-G solvation = -3907.201870 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.61752 -40.83012 -39.86215 -38.08540 -36.48485 -35.00163 -33.65409 -32.65255
-32.35528 -29.78751 -29.31371 -28.08124 -26.63921 -26.35610 -25.04805 -24.19431
-23.96780 -22.24337 -21.63316 -20.29964 -19.71225 -19.58217 -18.76405 -17.85329
-17.75351 -16.99211 -16.67734 -16.55205 -16.23285 -16.11404 -15.86345 -15.41894
-15.04719 -14.81041 -14.71732 -14.57316 -14.25851 -14.11108 -13.94502 -13.75223
-13.51381 -13.47711 -13.38583 -13.24772 -12.90675 -12.71785 -12.45466 -12.40822
-12.25623 -12.04339 -11.93704 -11.89829 -11.84622 -11.74015 -11.50469 -11.27716
-11.01448 -10.87635 -10.71830 -10.33544 -9.89388 -9.64451 -9.37131 -8.07871
-5.41039 0.09279 0.26154 1.33429 1.34386 1.40862 1.46097 1.90008
2.41856 2.78368 3.22227 3.24311 3.31322 3.42784 3.57493 3.61006
3.67580 3.76554 3.78518 3.92702 4.01124 4.12556 4.14697 4.17264
4.21348 4.29109 4.43446 4.45809 4.52522 4.58153 4.59363 4.67456
4.71955 4.77481 4.81637 4.85709 4.89504 4.98476 4.99904 5.04185
5.10175 5.13518 5.16703 5.17859 5.23027 5.26899 5.30827 5.44464
5.59952 5.71295 5.74931 6.17786 6.34955 6.98796 7.01731 7.06817
7.78791 7.95038 9.13310
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.014972 B = 0.003070 C = 0.002819
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1869.730421 B = 9118.534520 C = 9929.101613
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.056 3.944
2 N -0.592 5.592
3 C 0.519 3.481
4 O -0.583 6.583
5 C -0.028 4.028
6 C -0.122 4.122
7 C -0.084 4.084
8 C -0.166 4.166
9 C 0.094 3.906
10 N -0.498 5.498
11 C 0.112 3.888
12 C -0.113 4.113
13 C -0.117 4.117
14 C -0.124 4.124
15 C -0.107 4.107
16 C 0.125 3.875
17 C -0.161 4.161
18 C 0.156 3.844
19 N -0.738 5.738
20 C -0.229 4.229
21 H 0.067 0.933
22 C -0.057 4.057
23 N -0.979 5.979
24 Si 0.944 3.056
25 H -0.276 1.276
26 H -0.293 1.293
27 H -0.265 1.265
28 C -0.147 4.147
29 H 0.063 0.937
30 H 0.089 0.911
31 H 0.099 0.901
32 H 0.115 0.885
33 H 0.151 0.849
34 H 0.180 0.820
35 H 0.177 0.823
36 H 0.101 0.899
37 H 0.070 0.930
38 H 0.094 0.906
39 H 0.077 0.923
40 H 0.046 0.954
41 H 0.087 0.913
42 H 0.055 0.945
43 H 0.090 0.910
44 H 0.077 0.923
45 H 0.111 0.889
46 H 0.048 0.952
47 H 0.078 0.922
48 H 0.362 0.638
49 H 0.259 0.741
50 H 0.058 0.942
51 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.725 28.048 3.024 32.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 N -0.323 5.323
3 C 0.308 3.692
4 O -0.462 6.462
5 C -0.032 4.032
6 C -0.125 4.125
7 C -0.110 4.110
8 C -0.186 4.186
9 C -0.062 4.062
10 N -0.206 5.206
11 C -0.045 4.045
12 C -0.150 4.150
13 C -0.154 4.154
14 C -0.161 4.161
15 C -0.145 4.145
16 C 0.021 3.979
17 C -0.203 4.203
18 C 0.046 3.954
19 N -0.379 5.379
20 C -0.360 4.360
21 H 0.085 0.915
22 C -0.249 4.249
23 N -0.629 5.629
24 Si 0.773 3.227
25 H -0.203 1.203
26 H -0.220 1.220
27 H -0.190 1.190
28 C -0.187 4.187
29 H 0.081 0.919
30 H 0.107 0.893
31 H 0.117 0.883
32 H 0.133 0.867
33 H 0.169 0.831
34 H 0.197 0.803
35 H 0.194 0.806
36 H 0.119 0.881
37 H 0.088 0.912
38 H 0.113 0.887
39 H 0.096 0.904
40 H 0.064 0.936
41 H 0.105 0.895
42 H 0.074 0.926
43 H 0.109 0.891
44 H 0.096 0.904
45 H 0.129 0.871
46 H 0.067 0.933
47 H 0.097 0.903
48 H 0.195 0.805
49 H 0.068 0.932
50 H 0.077 0.923
51 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -16.749 28.512 2.900 33.194
hybrid contribution 2.430 -1.186 -0.343 2.726
sum -14.319 27.326 2.556 30.956
Atomic orbital electron populations
1.22443 0.77659 1.05335 1.03062 1.47866 1.07978 1.04615 1.71799
1.20962 0.87353 0.86254 0.74639 1.90677 1.16526 1.87678 1.51353
1.20314 0.94993 0.92339 0.95518 1.20485 0.98725 0.97701 0.95562
1.21710 0.97627 0.98130 0.93583 1.22343 0.96816 0.99994 0.99448
1.23207 0.96603 0.89923 0.96448 1.67808 1.22272 1.28992 1.01567
1.22799 0.90244 0.94919 0.96541 1.22496 0.99810 1.00560 0.92149
1.22427 0.95226 0.98229 0.99519 1.22506 0.97774 1.02081 0.93768
1.22442 0.97903 0.95718 0.98405 1.22391 0.96107 0.81406 0.97996
1.24076 1.01623 0.95906 0.98650 1.21169 0.86910 0.92700 0.94619
1.42585 1.03309 1.09372 1.82628 1.19091 0.93385 0.86911 1.36631
0.91479 1.25368 1.00213 0.96932 1.02356 1.69848 1.23624 1.13604
1.55850 0.85572 0.80331 0.78911 0.77924 1.20254 1.22000 1.19034
1.23839 1.03411 0.94896 0.96546 0.91862 0.89293 0.88262 0.86726
0.83110 0.80260 0.80571 0.88061 0.91178 0.88749 0.90394 0.93553
0.89470 0.92632 0.89114 0.90440 0.87070 0.93329 0.90344 0.80498
0.93248 0.92275 0.86286
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.88 6.79 127.77 0.87 1.75 16
2 N -0.59 -14.02 2.30 -819.66 -1.89 -15.90 16
3 C 0.52 13.84 4.91 87.66 0.43 14.27 16
4 O -0.58 -21.33 14.85 -3.04 -0.05 -21.37 16
5 C -0.03 -0.50 0.47 -52.95 -0.02 -0.53 16
6 C -0.12 -2.03 3.48 -19.77 -0.07 -2.10 16
7 C -0.08 -1.58 6.75 22.47 0.15 -1.43 16
8 C -0.17 -2.49 10.11 22.36 0.23 -2.27 16
9 C 0.09 1.32 11.18 84.69 0.95 2.26 16
10 N -0.50 -8.16 10.36 -195.84 -2.03 -10.19 16
11 C 0.11 1.59 9.25 84.67 0.78 2.38 16
12 C -0.11 -1.39 3.89 31.32 0.12 -1.26 16
13 C -0.12 -1.18 6.84 31.69 0.22 -0.97 16
14 C -0.12 -1.88 6.91 31.91 0.22 -1.66 16
15 C -0.11 -1.99 5.68 31.67 0.18 -1.81 16
16 C 0.12 3.76 4.10 45.52 0.19 3.95 16
17 C -0.16 -4.90 7.35 31.12 0.23 -4.67 16
18 C 0.16 5.58 4.56 45.52 0.21 5.79 16
19 N -0.74 -34.63 5.11 -320.44 -1.64 -36.27 16
20 C -0.23 -13.01 10.45 84.03 0.88 -12.13 16
21 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16
22 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16
23 N -0.98 -62.92 13.97 21.65 0.30 -62.62 16
24 Si 0.94 47.21 27.74 68.60 1.90 49.12 16
25 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16
26 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16
27 H -0.26 -12.60 6.52 99.48 0.65 -11.95 16
28 C -0.15 -4.18 7.39 31.12 0.23 -3.95 16
29 H 0.06 0.96 6.49 -2.39 -0.02 0.94 16
30 H 0.09 1.15 6.59 -2.39 -0.02 1.14 16
31 H 0.10 1.22 3.52 -2.38 -0.01 1.21 16
32 H 0.11 2.67 5.90 -2.91 -0.02 2.65 16
33 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16
34 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16
35 H 0.18 1.64 7.84 -2.91 -0.02 1.61 16
36 H 0.10 0.82 6.39 -2.39 -0.02 0.80 16
37 H 0.07 1.00 6.91 -2.39 -0.02 0.98 16
38 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16
39 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16
40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
41 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16
42 H 0.05 1.42 6.78 -2.39 -0.02 1.41 16
43 H 0.09 1.34 7.35 -2.39 -0.02 1.32 16
44 H 0.08 2.97 7.21 -2.39 -0.02 2.96 16
45 H 0.11 2.59 6.79 -2.39 -0.02 2.58 16
46 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
47 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16
48 H 0.36 17.07 5.76 -92.71 -0.53 16.53 16
49 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16
50 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16
51 H 0.12 2.51 6.86 -2.38 -0.02 2.50 16
Total: -1.00 -76.06 384.51 3.21 -72.84
By element:
Atomic # 1 Polarization: 29.35 SS G_CDS: 0.36 Total: 29.70 kcal
Atomic # 6 Polarization: -11.56 SS G_CDS: 6.25 Total: -5.31 kcal
Atomic # 7 Polarization: -119.73 SS G_CDS: -5.25 Total: -124.98 kcal
Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.37 kcal
Atomic # 14 Polarization: 47.21 SS G_CDS: 1.90 Total: 49.12 kcal
Total: -76.06 3.21 -72.84 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999308448.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.261 kcal
(2) G-P(sol) polarization free energy of solvation -76.055 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.206 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.845 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.416 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds