Wall clock time and date at job start Sat Apr 11 2020 07:00:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36935 * 119.99894 * 2 1
4 4 H 1.08003 * 119.99878 * 190.69045 * 3 2 1
5 5 C 1.38811 * 120.00351 * 10.68860 * 3 2 1
6 6 N 1.31624 * 119.99544 * 12.23867 * 5 3 2
7 7 Si 1.86799 * 120.00284 * 192.22935 * 5 3 2
8 8 H 1.48493 * 109.47008 * 0.02562 * 7 5 3
9 9 H 1.48504 * 109.46538 * 120.00134 * 7 5 3
10 10 H 1.48504 * 109.47334 * 239.99941 * 7 5 3
11 11 C 1.46496 * 120.00164 * 180.02562 * 2 1 3
12 12 C 1.52998 * 109.47343 * 85.18260 * 11 2 1
13 13 H 1.08999 * 109.70464 * 301.50799 * 12 11 2
14 14 C 1.53629 * 109.66431 * 62.10185 * 12 11 2
15 15 C 1.53037 * 109.24044 * 174.54957 * 14 12 11
16 16 C 1.53040 * 109.53934 * 298.50999 * 15 14 12
17 17 C 1.53189 * 109.31147 * 61.36852 * 16 15 14
18 18 N 1.46927 * 109.58549 * 181.15455 * 12 11 2
19 19 C 1.34778 * 120.63415 * 6.62708 * 18 12 11
20 20 O 1.21275 * 119.99626 * 354.76460 * 19 18 12
21 21 C 1.50690 * 120.00067 * 174.76507 * 19 18 12
22 22 H 1.09008 * 115.56651 * 34.30876 * 21 19 18
23 23 C 1.53077 * 117.49221 * 248.60111 * 21 19 18
24 24 C 1.52997 * 59.98344 * 252.51358 * 23 21 19
25 25 H 1.09004 * 117.49885 * 107.50471 * 24 23 21
26 26 C 1.50707 * 117.50050 * 252.49509 * 24 23 21
27 27 C 1.38669 * 120.41910 * 188.72262 * 26 24 23
28 28 C 1.38623 * 118.41921 * 179.75688 * 27 26 24
29 29 C 1.38234 * 119.16124 * 0.55089 * 28 27 26
30 30 N 1.31848 * 120.76072 * 359.43990 * 29 28 27
31 31 C 1.31889 * 121.72682 * 0.27362 * 30 29 28
32 32 H 1.08995 * 109.47129 * 174.91821 * 1 2 3
33 33 H 1.09000 * 109.46981 * 294.92320 * 1 2 3
34 34 H 1.09000 * 109.47105 * 54.92032 * 1 2 3
35 35 H 0.97007 * 119.99509 * 180.02562 * 6 5 3
36 36 H 1.09007 * 109.47124 * 325.18583 * 11 2 1
37 37 H 1.09002 * 109.47230 * 205.18774 * 11 2 1
38 38 H 1.09002 * 109.63234 * 54.55378 * 14 12 11
39 39 H 1.09003 * 109.45485 * 294.43734 * 14 12 11
40 40 H 1.09002 * 109.45420 * 178.49187 * 15 14 12
41 41 H 1.09000 * 109.46007 * 58.53463 * 15 14 12
42 42 H 1.09001 * 109.49725 * 301.41284 * 16 15 14
43 43 H 1.08996 * 109.52503 * 181.33794 * 16 15 14
44 44 H 1.09004 * 109.58720 * 185.58193 * 17 16 15
45 45 H 1.08999 * 109.70735 * 65.22462 * 17 16 15
46 46 H 1.08999 * 117.51298 * 145.03687 * 23 21 19
47 47 H 1.08998 * 117.51327 * 359.97438 * 23 21 19
48 48 H 1.08001 * 120.79249 * 0.05436 * 27 26 24
49 49 H 1.08001 * 120.42244 * 180.29165 * 28 27 26
50 50 H 1.07998 * 119.61767 * 179.71010 * 29 28 27
51 51 H 1.08000 * 119.61531 * 180.02562 * 31 30 29
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.2156 1.1940 -0.1735
5 6 1.4737 2.3776 0.2230
6 7 0.2357 2.3584 0.6694
7 14 2.3212 4.0086 -0.1104
8 1 3.6995 3.7587 -0.6032
9 1 1.5577 4.7622 -1.1373
10 1 2.3796 4.8016 1.1439
11 6 2.1975 -1.2687 -0.0006
12 6 2.3477 -1.7703 -1.4382
13 1 1.3629 -1.8963 -1.8882
14 6 3.1662 -0.7594 -2.2556
15 6 3.4265 -1.3319 -3.6508
16 6 4.2384 -2.6237 -3.5307
17 6 3.4369 -3.6529 -2.7276
18 7 3.0579 -3.0565 -1.4393
19 6 3.3513 -3.6801 -0.2811
20 8 3.1142 -3.1368 0.7770
21 6 3.9737 -5.0523 -0.3008
22 1 4.6623 -5.2448 -1.1236
23 6 3.1206 -6.2224 0.1957
24 6 4.2829 -5.7072 1.0470
25 1 4.0364 -5.1453 1.9479
26 6 5.5161 -6.5688 1.1354
27 6 6.5303 -6.2537 2.0271
28 6 7.6440 -7.0777 2.0776
29 6 7.7112 -8.1717 1.2353
30 7 6.7275 -8.4408 0.3996
31 6 5.6508 -7.6824 0.3285
32 1 -0.3633 -1.0236 -0.0910
33 1 -0.3633 0.4331 0.9320
34 1 -0.3633 0.5906 -0.8410
35 1 -0.2368 3.1912 0.8249
36 1 1.6485 -2.0055 0.5859
37 1 3.1846 -1.1185 0.4369
38 1 4.1167 -0.5694 -1.7571
39 1 2.6086 0.1731 -2.3431
40 1 3.9841 -0.6062 -4.2428
41 1 2.4755 -1.5447 -4.1392
42 1 5.1789 -2.4161 -3.0203
43 1 4.4439 -3.0185 -4.5256
44 1 4.0489 -4.5381 -2.5543
45 1 2.5393 -3.9317 -3.2795
46 1 3.2480 -7.1845 -0.3004
47 1 2.1097 -5.9994 0.5368
48 1 6.4523 -5.3897 2.6703
49 1 8.4508 -6.8652 2.7634
50 1 8.5775 -8.8159 1.2652
51 1 4.8652 -7.9349 -0.3683
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001158501633.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:06
Heat of formation + Delta-G solvation = 71.709636 kcal
Electronic energy + Delta-G solvation = -30621.666652 eV
Core-core repulsion = 26716.385486 eV
Total energy + Delta-G solvation = -3905.281165 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-40.87509 -40.13677 -37.84476 -36.41838 -35.39538 -32.77627 -32.56836 -32.00252
-31.05021 -30.00151 -26.69000 -25.85428 -24.99083 -24.53293 -24.05617 -23.49568
-22.17872 -21.16485 -20.46639 -20.16492 -18.72284 -17.68071 -17.02688 -16.58417
-16.31304 -15.78444 -15.54452 -15.04131 -14.83851 -14.43532 -14.24035 -14.19470
-14.08865 -13.82584 -13.38306 -13.31369 -13.11066 -12.80768 -12.70898 -12.46022
-12.29668 -12.22375 -11.99250 -11.62392 -11.27496 -11.12046 -11.00636 -10.77858
-10.71075 -10.62145 -10.55170 -10.37839 -10.23333 -10.02685 -9.98848 -9.81601
-9.72438 -9.66827 -9.12524 -8.84041 -8.46991 -8.18824 -6.71670 -5.51545
-2.98252 0.75536 0.98645 2.63424 3.10814 3.42291 3.43666 3.49996
3.51851 3.82864 4.04380 4.31313 4.46155 4.54270 4.59441 4.61110
4.68716 4.74038 4.80931 4.94029 4.98178 5.02411 5.11667 5.21644
5.37752 5.42201 5.51060 5.51896 5.54907 5.57910 5.70491 5.76482
5.77448 5.90104 5.92807 5.95745 6.01786 6.07955 6.15041 6.19334
6.38491 6.46081 6.52120 6.73596 6.86253 6.94912 7.03126 7.33057
7.58110 7.66281 7.70004 7.86614 8.03147 8.43385 8.55102 9.38024
10.03875 10.47791 11.45380
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.014965 B = 0.002664 C = 0.002534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1870.551069 B =10507.812448 C =11047.415358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.158 3.842
2 N -0.608 5.608
3 C -0.236 4.236
4 H 0.072 0.928
5 C -0.009 4.009
6 N -0.914 5.914
7 Si 0.901 3.099
8 H -0.280 1.280
9 H -0.292 1.292
10 H -0.292 1.292
11 C 0.167 3.833
12 C 0.123 3.877
13 H 0.062 0.938
14 C -0.120 4.120
15 C -0.121 4.121
16 C -0.134 4.134
17 C 0.107 3.893
18 N -0.600 5.600
19 C 0.537 3.463
20 O -0.521 6.521
21 C -0.175 4.175
22 H 0.123 0.877
23 C -0.143 4.143
24 C -0.085 4.085
25 H 0.131 0.869
26 C -0.099 4.099
27 C -0.066 4.066
28 C -0.169 4.169
29 C 0.089 3.911
30 N -0.483 5.483
31 C 0.096 3.904
32 H -0.007 1.007
33 H 0.064 0.936
34 H 0.018 0.982
35 H 0.247 0.753
36 H 0.059 0.941
37 H 0.058 0.942
38 H 0.057 0.943
39 H 0.093 0.907
40 H 0.059 0.941
41 H 0.059 0.941
42 H 0.064 0.936
43 H 0.068 0.932
44 H 0.079 0.921
45 H 0.066 0.934
46 H 0.106 0.894
47 H 0.108 0.892
48 H 0.138 0.862
49 H 0.136 0.864
50 H 0.155 0.845
51 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.987 -21.118 -4.878 24.300
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 N -0.332 5.332
3 C -0.365 4.365
4 H 0.090 0.910
5 C -0.206 4.206
6 N -0.562 5.562
7 Si 0.732 3.268
8 H -0.206 1.206
9 H -0.219 1.219
10 H -0.220 1.220
11 C 0.040 3.960
12 C 0.019 3.981
13 H 0.080 0.920
14 C -0.158 4.158
15 C -0.159 4.159
16 C -0.172 4.172
17 C -0.016 4.016
18 N -0.334 5.334
19 C 0.324 3.676
20 O -0.397 6.397
21 C -0.196 4.196
22 H 0.140 0.860
23 C -0.180 4.180
24 C -0.104 4.104
25 H 0.149 0.851
26 C -0.101 4.101
27 C -0.092 4.092
28 C -0.189 4.189
29 C -0.068 4.068
30 N -0.191 5.191
31 C -0.061 4.061
32 H 0.012 0.988
33 H 0.082 0.918
34 H 0.036 0.964
35 H 0.058 0.942
36 H 0.077 0.923
37 H 0.076 0.924
38 H 0.076 0.924
39 H 0.112 0.888
40 H 0.078 0.922
41 H 0.078 0.922
42 H 0.083 0.917
43 H 0.087 0.913
44 H 0.098 0.902
45 H 0.084 0.916
46 H 0.124 0.876
47 H 0.127 0.873
48 H 0.156 0.844
49 H 0.154 0.846
50 H 0.172 0.828
51 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges 10.812 -21.395 -4.809 24.450
hybrid contribution 0.457 1.778 0.035 1.836
sum 11.269 -19.617 -4.774 23.121
Atomic orbital electron populations
1.21061 0.82483 0.93194 1.01937 1.44303 1.02179 1.01139 1.85560
1.19319 0.92387 0.84016 1.40818 0.91046 1.24848 0.96602 0.97747
1.01354 1.70129 1.11224 1.24732 1.50154 0.86210 0.78545 0.84568
0.77482 1.20573 1.21861 1.21976 1.21361 0.97398 0.87271 0.90014
1.22617 0.93185 0.80098 1.02248 0.91978 1.21966 1.00641 0.99719
0.93450 1.21574 0.99635 0.96278 0.98423 1.21913 0.99184 0.96465
0.99641 1.21730 0.99116 0.95969 0.84781 1.48268 1.57477 1.22552
1.05065 1.19478 0.78543 0.85601 0.83958 1.90813 1.52617 1.65442
1.30829 1.22510 1.04672 0.93316 0.99107 0.85957 1.23128 0.96593
0.96427 1.01852 1.20993 0.93333 1.00184 0.95939 0.85079 1.20175
0.95681 0.96624 0.97612 1.21527 0.92281 0.98652 0.96692 1.22174
0.99213 0.96488 1.00989 1.22774 0.96911 0.95481 0.91623 1.67706
1.01227 1.29887 1.20316 1.22686 0.95375 0.90812 0.97228 0.98831
0.91817 0.96382 0.94172 0.92289 0.92408 0.92400 0.88837 0.92193
0.92233 0.91744 0.91342 0.90244 0.91588 0.87570 0.87326 0.84419
0.84631 0.82819 0.82784
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 4.08 9.04 59.85 0.54 4.62 16
2 N -0.61 -15.77 2.69 -181.12 -0.49 -16.26 16
3 C -0.24 -6.55 8.22 -15.06 -0.12 -6.68 16
4 H 0.07 1.95 7.77 -52.48 -0.41 1.55 16
5 C -0.01 -0.27 5.32 -17.43 -0.09 -0.36 16
6 N -0.91 -27.23 9.94 55.49 0.55 -26.68 16
7 Si 0.90 22.36 29.57 -169.99 -5.03 17.34 16
8 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16
9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
11 C 0.17 3.73 3.51 -4.04 -0.01 3.72 16
12 C 0.12 2.23 3.20 -67.37 -0.22 2.01 16
13 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16
14 C -0.12 -2.09 4.67 -26.39 -0.12 -2.22 16
15 C -0.12 -1.61 5.88 -26.69 -0.16 -1.77 16
16 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16
17 C 0.11 1.15 6.33 -3.71 -0.02 1.13 16
18 N -0.60 -8.79 2.97 -164.96 -0.49 -9.27 16
19 C 0.54 8.09 7.39 -10.99 -0.08 8.01 16
20 O -0.52 -9.92 11.66 5.56 0.06 -9.85 16
21 C -0.17 -1.86 4.90 -91.74 -0.45 -2.31 16
22 H 0.12 1.10 6.38 -51.92 -0.33 0.77 16
23 C -0.14 -1.25 9.57 -26.69 -0.26 -1.51 16
24 C -0.09 -0.87 5.57 -91.77 -0.51 -1.38 16
25 H 0.13 1.55 7.67 -51.93 -0.40 1.15 16
26 C -0.10 -0.95 5.62 -104.48 -0.59 -1.54 16
27 C -0.07 -0.59 9.89 -39.28 -0.39 -0.98 16
28 C -0.17 -1.31 10.11 -39.44 -0.40 -1.71 16
29 C 0.09 0.75 11.18 -17.55 -0.20 0.55 16
30 N -0.48 -4.97 10.36 -13.25 -0.14 -5.10 16
31 C 0.10 0.90 10.47 -17.55 -0.18 0.71 16
32 H -0.01 -0.16 7.90 -51.93 -0.41 -0.57 16
33 H 0.06 1.82 6.44 -51.93 -0.33 1.49 16
34 H 0.02 0.48 7.79 -51.93 -0.40 0.08 16
35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16
36 H 0.06 1.38 6.27 -51.92 -0.33 1.06 16
37 H 0.06 1.40 6.98 -51.93 -0.36 1.04 16
38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
39 H 0.09 1.92 6.98 -51.93 -0.36 1.56 16
40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16
44 H 0.08 0.67 5.48 -51.93 -0.28 0.38 16
45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
46 H 0.11 0.67 6.21 -51.93 -0.32 0.35 16
47 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16
48 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16
49 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16
50 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16
51 H 0.16 1.13 6.04 -52.49 -0.32 0.81 16
LS Contribution 395.01 15.07 5.95 5.95
Total: -1.00 -33.01 395.01 -11.04 -44.05
By element:
Atomic # 1 Polarization: 9.19 SS G_CDS: -8.05 Total: 1.14 kcal
Atomic # 6 Polarization: 2.11 SS G_CDS: -3.42 Total: -1.31 kcal
Atomic # 7 Polarization: -56.75 SS G_CDS: -0.56 Total: -57.31 kcal
Atomic # 8 Polarization: -9.92 SS G_CDS: 0.06 Total: -9.85 kcal
Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.34 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -33.01 -11.04 -44.05 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001158501633.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.757 kcal
(2) G-P(sol) polarization free energy of solvation -33.006 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.751 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.042 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.710 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds