Wall clock time and date at job start Sat Apr 11 2020 07:00:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36935 * 119.99894 * 2 1
4 4 H 1.08003 * 119.99878 * 190.69045 * 3 2 1
5 5 C 1.38811 * 120.00351 * 10.68860 * 3 2 1
6 6 N 1.31624 * 119.99544 * 12.23867 * 5 3 2
7 7 Si 1.86799 * 120.00284 * 192.22935 * 5 3 2
8 8 H 1.48493 * 109.47008 * 0.02562 * 7 5 3
9 9 H 1.48504 * 109.46538 * 120.00134 * 7 5 3
10 10 H 1.48504 * 109.47334 * 239.99941 * 7 5 3
11 11 C 1.46496 * 120.00164 * 180.02562 * 2 1 3
12 12 C 1.52998 * 109.47343 * 85.18260 * 11 2 1
13 13 H 1.08999 * 109.70464 * 301.50799 * 12 11 2
14 14 C 1.53629 * 109.66431 * 62.10185 * 12 11 2
15 15 C 1.53037 * 109.24044 * 174.54957 * 14 12 11
16 16 C 1.53040 * 109.53934 * 298.50999 * 15 14 12
17 17 C 1.53189 * 109.31147 * 61.36852 * 16 15 14
18 18 N 1.46927 * 109.58549 * 181.15455 * 12 11 2
19 19 C 1.34778 * 120.63415 * 6.62708 * 18 12 11
20 20 O 1.21275 * 119.99626 * 354.76460 * 19 18 12
21 21 C 1.50690 * 120.00067 * 174.76507 * 19 18 12
22 22 H 1.09008 * 115.56651 * 34.30876 * 21 19 18
23 23 C 1.53077 * 117.49221 * 248.60111 * 21 19 18
24 24 C 1.52997 * 59.98344 * 252.51358 * 23 21 19
25 25 H 1.09004 * 117.49885 * 107.50471 * 24 23 21
26 26 C 1.50707 * 117.50050 * 252.49509 * 24 23 21
27 27 C 1.38669 * 120.41910 * 188.72262 * 26 24 23
28 28 C 1.38623 * 118.41921 * 179.75688 * 27 26 24
29 29 C 1.38234 * 119.16124 * 0.55089 * 28 27 26
30 30 N 1.31848 * 120.76072 * 359.43990 * 29 28 27
31 31 C 1.31889 * 121.72682 * 0.27362 * 30 29 28
32 32 H 1.08995 * 109.47129 * 174.91821 * 1 2 3
33 33 H 1.09000 * 109.46981 * 294.92320 * 1 2 3
34 34 H 1.09000 * 109.47105 * 54.92032 * 1 2 3
35 35 H 0.97007 * 119.99509 * 180.02562 * 6 5 3
36 36 H 1.09007 * 109.47124 * 325.18583 * 11 2 1
37 37 H 1.09002 * 109.47230 * 205.18774 * 11 2 1
38 38 H 1.09002 * 109.63234 * 54.55378 * 14 12 11
39 39 H 1.09003 * 109.45485 * 294.43734 * 14 12 11
40 40 H 1.09002 * 109.45420 * 178.49187 * 15 14 12
41 41 H 1.09000 * 109.46007 * 58.53463 * 15 14 12
42 42 H 1.09001 * 109.49725 * 301.41284 * 16 15 14
43 43 H 1.08996 * 109.52503 * 181.33794 * 16 15 14
44 44 H 1.09004 * 109.58720 * 185.58193 * 17 16 15
45 45 H 1.08999 * 109.70735 * 65.22462 * 17 16 15
46 46 H 1.08999 * 117.51298 * 145.03687 * 23 21 19
47 47 H 1.08998 * 117.51327 * 359.97438 * 23 21 19
48 48 H 1.08001 * 120.79249 * 0.05436 * 27 26 24
49 49 H 1.08001 * 120.42244 * 180.29165 * 28 27 26
50 50 H 1.07998 * 119.61767 * 179.71010 * 29 28 27
51 51 H 1.08000 * 119.61531 * 180.02562 * 31 30 29
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.2156 1.1940 -0.1735
5 6 1.4737 2.3776 0.2230
6 7 0.2357 2.3584 0.6694
7 14 2.3212 4.0086 -0.1104
8 1 3.6995 3.7587 -0.6032
9 1 1.5577 4.7622 -1.1373
10 1 2.3796 4.8016 1.1439
11 6 2.1975 -1.2687 -0.0006
12 6 2.3477 -1.7703 -1.4382
13 1 1.3629 -1.8963 -1.8882
14 6 3.1662 -0.7594 -2.2556
15 6 3.4265 -1.3319 -3.6508
16 6 4.2384 -2.6237 -3.5307
17 6 3.4369 -3.6529 -2.7276
18 7 3.0579 -3.0565 -1.4393
19 6 3.3513 -3.6801 -0.2811
20 8 3.1142 -3.1368 0.7770
21 6 3.9737 -5.0523 -0.3008
22 1 4.6623 -5.2448 -1.1236
23 6 3.1206 -6.2224 0.1957
24 6 4.2829 -5.7072 1.0470
25 1 4.0364 -5.1453 1.9479
26 6 5.5161 -6.5688 1.1354
27 6 6.5303 -6.2537 2.0271
28 6 7.6440 -7.0777 2.0776
29 6 7.7112 -8.1717 1.2353
30 7 6.7275 -8.4408 0.3996
31 6 5.6508 -7.6824 0.3285
32 1 -0.3633 -1.0236 -0.0910
33 1 -0.3633 0.4331 0.9320
34 1 -0.3633 0.5906 -0.8410
35 1 -0.2368 3.1912 0.8249
36 1 1.6485 -2.0055 0.5859
37 1 3.1846 -1.1185 0.4369
38 1 4.1167 -0.5694 -1.7571
39 1 2.6086 0.1731 -2.3431
40 1 3.9841 -0.6062 -4.2428
41 1 2.4755 -1.5447 -4.1392
42 1 5.1789 -2.4161 -3.0203
43 1 4.4439 -3.0185 -4.5256
44 1 4.0489 -4.5381 -2.5543
45 1 2.5393 -3.9317 -3.2795
46 1 3.2480 -7.1845 -0.3004
47 1 2.1097 -5.9994 0.5368
48 1 6.4523 -5.3897 2.6703
49 1 8.4508 -6.8652 2.7634
50 1 8.5775 -8.8159 1.2652
51 1 4.8652 -7.9349 -0.3683
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001158501633.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:05
Heat of formation + Delta-G solvation = 53.236972 kcal
Electronic energy + Delta-G solvation = -30622.467686 eV
Core-core repulsion = 26716.385486 eV
Total energy + Delta-G solvation = -3906.082200 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.200 amu
Computer time = 1.25 seconds
Orbital eigenvalues (eV)
-41.84006 -41.05339 -38.93799 -37.49101 -37.25777 -33.90622 -33.73575 -33.31467
-31.91282 -31.54724 -28.13730 -28.00472 -26.26112 -25.37149 -25.00723 -24.29751
-23.65291 -22.20990 -21.82659 -21.36916 -19.82774 -18.78354 -18.40085 -17.85003
-17.20891 -17.09136 -16.60457 -16.57516 -15.95427 -15.58229 -15.42658 -15.30003
-15.03397 -14.98562 -14.81261 -14.59113 -14.35427 -14.07267 -13.95762 -13.87418
-13.47851 -13.33305 -13.00725 -12.82133 -12.71986 -12.69036 -12.59093 -12.26021
-12.14408 -12.02688 -11.96520 -11.86534 -11.74724 -11.53660 -11.45778 -11.33538
-10.70555 -10.64888 -10.38654 -10.24167 -9.75829 -9.46617 -8.84407 -7.70580
-5.20063 0.11343 0.32972 1.43822 1.43957 1.53948 1.54789 1.97149
2.52420 2.68325 3.06335 3.28673 3.36019 3.61923 3.64472 3.71963
3.84040 3.88598 3.93967 3.97150 4.03204 4.05782 4.09487 4.13686
4.18917 4.36000 4.38758 4.50829 4.58311 4.64330 4.68993 4.74485
4.79606 4.82239 4.92372 4.97742 5.03323 5.06234 5.08145 5.13417
5.18401 5.24072 5.26566 5.33981 5.38899 5.43377 5.51017 5.62314
5.75578 5.77368 5.82660 6.33188 6.54605 7.02576 7.17607 7.27437
7.92364 8.32284 9.25269
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.014965 B = 0.002664 C = 0.002534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1870.551069 B =10507.812448 C =11047.415358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.175 3.825
2 N -0.623 5.623
3 C -0.237 4.237
4 H 0.069 0.931
5 C -0.066 4.066
6 N -0.945 5.945
7 Si 0.967 3.033
8 H -0.269 1.269
9 H -0.289 1.289
10 H -0.295 1.295
11 C 0.180 3.820
12 C 0.136 3.864
13 H 0.059 0.941
14 C -0.112 4.112
15 C -0.116 4.116
16 C -0.128 4.128
17 C 0.102 3.898
18 N -0.600 5.600
19 C 0.528 3.472
20 O -0.573 6.573
21 C -0.172 4.172
22 H 0.150 0.850
23 C -0.121 4.121
24 C -0.089 4.089
25 H 0.105 0.895
26 C -0.106 4.106
27 C -0.083 4.083
28 C -0.167 4.167
29 C 0.083 3.917
30 N -0.505 5.505
31 C 0.093 3.907
32 H 0.018 0.982
33 H 0.034 0.966
34 H 0.000 1.000
35 H 0.244 0.756
36 H 0.046 0.954
37 H 0.031 0.969
38 H 0.038 0.962
39 H 0.056 0.944
40 H 0.068 0.932
41 H 0.067 0.933
42 H 0.057 0.943
43 H 0.106 0.894
44 H 0.112 0.888
45 H 0.084 0.916
46 H 0.141 0.859
47 H 0.098 0.902
48 H 0.137 0.863
49 H 0.160 0.840
50 H 0.179 0.821
51 H 0.175 0.825
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.922 -23.737 -7.227 27.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 N -0.348 5.348
3 C -0.367 4.367
4 H 0.087 0.913
5 C -0.259 4.259
6 N -0.595 5.595
7 Si 0.796 3.204
8 H -0.193 1.193
9 H -0.216 1.216
10 H -0.222 1.222
11 C 0.054 3.946
12 C 0.031 3.969
13 H 0.077 0.923
14 C -0.151 4.151
15 C -0.154 4.154
16 C -0.166 4.166
17 C -0.019 4.019
18 N -0.333 5.333
19 C 0.318 3.682
20 O -0.453 6.453
21 C -0.193 4.193
22 H 0.167 0.833
23 C -0.158 4.158
24 C -0.109 4.109
25 H 0.123 0.877
26 C -0.108 4.108
27 C -0.108 4.108
28 C -0.186 4.186
29 C -0.073 4.073
30 N -0.214 5.214
31 C -0.063 4.063
32 H 0.037 0.963
33 H 0.052 0.948
34 H 0.019 0.981
35 H 0.054 0.946
36 H 0.064 0.936
37 H 0.050 0.950
38 H 0.057 0.943
39 H 0.075 0.925
40 H 0.086 0.914
41 H 0.086 0.914
42 H 0.075 0.925
43 H 0.124 0.876
44 H 0.130 0.870
45 H 0.102 0.898
46 H 0.159 0.841
47 H 0.117 0.883
48 H 0.155 0.845
49 H 0.177 0.823
50 H 0.196 0.804
51 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges 12.784 -24.070 -7.201 28.190
hybrid contribution -0.094 2.517 0.851 2.658
sum 12.690 -21.554 -6.350 25.805
Atomic orbital electron populations
1.20734 0.82640 0.93992 0.99580 1.44534 1.02350 1.01986 1.85902
1.19516 0.92441 0.84943 1.39821 0.91303 1.25633 0.97485 1.00985
1.01819 1.70326 1.12533 1.25130 1.51471 0.85182 0.78058 0.80235
0.76954 1.19308 1.21611 1.22232 1.21216 0.95148 0.85529 0.92709
1.21989 0.93900 0.82352 0.98709 0.92297 1.21803 0.98727 0.98280
0.96279 1.21537 1.00834 0.97850 0.95148 1.21909 0.98119 0.94941
1.01619 1.22100 1.00515 0.96747 0.82573 1.48302 1.56840 1.21147
1.07001 1.20287 0.77775 0.87041 0.83146 1.90789 1.54820 1.67001
1.32650 1.22406 1.05690 0.90892 1.00317 0.83294 1.23259 0.95452
0.96805 1.00282 1.20850 0.94726 1.00450 0.94851 0.87705 1.20124
0.95398 0.96937 0.98383 1.21742 0.92977 0.99162 0.96970 1.22436
0.99282 0.95841 1.01040 1.23251 0.97274 0.95806 0.91005 1.67755
1.01933 1.30477 1.21235 1.22951 0.95728 0.90313 0.97348 0.96308
0.94810 0.98132 0.94638 0.93618 0.95049 0.94283 0.92516 0.91358
0.91393 0.92464 0.87615 0.86978 0.89820 0.84078 0.88333 0.84510
0.82259 0.80375 0.80792
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 9.46 9.04 127.77 1.15 10.62 16
2 N -0.62 -33.80 2.69 -726.94 -1.95 -35.75 16
3 C -0.24 -13.69 8.22 84.03 0.69 -13.00 16
4 H 0.07 3.92 7.77 -2.91 -0.02 3.90 16
5 C -0.07 -3.89 5.32 84.86 0.45 -3.44 16
6 N -0.94 -58.35 9.94 21.65 0.22 -58.14 16
7 Si 0.97 47.18 29.57 68.60 2.03 49.21 16
8 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16
9 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16
10 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16
11 C 0.18 8.44 3.51 86.38 0.30 8.74 16
12 C 0.14 5.00 3.20 45.12 0.14 5.14 16
13 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
14 C -0.11 -3.99 4.67 30.82 0.14 -3.84 16
15 C -0.12 -2.84 5.88 30.62 0.18 -2.66 16
16 C -0.13 -2.28 6.08 30.67 0.19 -2.10 16
17 C 0.10 1.80 6.33 86.36 0.55 2.34 16
18 N -0.60 -16.91 2.97 -794.22 -2.36 -19.27 16
19 C 0.53 15.77 7.39 87.65 0.65 16.41 16
20 O -0.57 -22.89 11.66 -3.01 -0.04 -22.93 16
21 C -0.17 -3.32 4.90 -11.52 -0.06 -3.37 16
22 H 0.15 2.07 6.38 -2.38 -0.02 2.06 16
23 C -0.12 -1.83 9.57 30.62 0.29 -1.54 16
24 C -0.09 -1.75 5.57 -11.54 -0.06 -1.82 16
25 H 0.10 2.62 7.67 -2.38 -0.02 2.61 16
26 C -0.11 -1.88 5.62 -19.77 -0.11 -1.99 16
27 C -0.08 -1.42 9.89 22.46 0.22 -1.19 16
28 C -0.17 -2.27 10.11 22.36 0.23 -2.04 16
29 C 0.08 1.19 11.18 84.69 0.95 2.14 16
30 N -0.51 -9.10 10.36 -195.84 -2.03 -11.13 16
31 C 0.09 1.49 10.47 84.67 0.89 2.37 16
32 H 0.02 0.88 7.90 -2.39 -0.02 0.86 16
33 H 0.03 2.02 6.44 -2.39 -0.02 2.01 16
34 H 0.00 0.01 7.79 -2.39 -0.02 -0.01 16
35 H 0.24 14.58 8.31 -92.70 -0.77 13.81 16
36 H 0.05 2.26 6.27 -2.38 -0.01 2.25 16
37 H 0.03 1.62 6.98 -2.39 -0.02 1.60 16
38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
39 H 0.06 2.42 6.98 -2.39 -0.02 2.40 16
40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
43 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16
44 H 0.11 1.30 5.48 -2.39 -0.01 1.28 16
45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
46 H 0.14 1.16 6.21 -2.39 -0.01 1.15 16
47 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16
48 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16
49 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16
50 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16
51 H 0.18 1.86 6.04 -2.91 -0.02 1.85 16
Total: -1.00 -76.72 395.01 3.58 -73.14
By element:
Atomic # 1 Polarization: 13.19 SS G_CDS: 0.92 Total: 14.11 kcal
Atomic # 6 Polarization: 3.98 SS G_CDS: 6.79 Total: 10.77 kcal
Atomic # 7 Polarization: -118.17 SS G_CDS: -6.12 Total: -124.29 kcal
Atomic # 8 Polarization: -22.89 SS G_CDS: -0.04 Total: -22.93 kcal
Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal
Total: -76.72 3.58 -73.14 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001158501633.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.374 kcal
(2) G-P(sol) polarization free energy of solvation -76.720 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.654 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.237 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.25 seconds