Wall clock time and date at job start Sat Apr 11 2020 07:02:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30833 * 1
3 3 Si 1.86801 * 119.99975 * 2 1
4 4 H 1.48498 * 109.47402 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47255 * 300.00306 * 3 2 1
6 6 H 1.48502 * 109.46995 * 60.00015 * 3 2 1
7 7 C 1.39952 * 120.00147 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00070 * 197.98008 * 7 2 1
9 9 C 1.41007 * 119.99849 * 17.98427 * 7 2 1
10 10 C 1.40945 * 120.11702 * 24.68971 * 9 7 2
11 11 C 1.36229 * 119.87815 * 180.02562 * 10 9 7
12 12 C 1.39953 * 120.12163 * 359.97438 * 11 10 9
13 13 C 1.47975 * 119.88603 * 180.02562 * 12 11 10
14 14 C 1.36910 * 126.95910 * 180.02562 * 13 12 11
15 15 N 1.35090 * 106.00260 * 179.97438 * 14 13 12
16 16 C 1.46494 * 125.71303 * 179.97438 * 15 14 13
17 17 C 1.52996 * 109.47577 * 124.99806 * 16 15 14
18 18 C 1.52995 * 109.47325 * 179.97438 * 17 16 15
19 19 C 1.53002 * 109.47202 * 179.97438 * 18 17 16
20 20 N 1.46894 * 109.47211 * 179.97438 * 19 18 17
21 21 C 1.46907 * 111.00041 * 180.02562 * 20 19 18
22 22 C 1.53001 * 109.46981 * 180.02562 * 21 20 19
23 23 C 1.53005 * 109.47026 * 179.97438 * 22 21 20
24 24 N 1.46899 * 109.47081 * 179.97438 * 23 22 21
25 25 N 1.28635 * 108.57481 * 359.97438 * 15 14 13
26 26 N 1.28607 * 110.58841 * 0.02562 * 25 15 14
27 27 C 1.39959 * 120.23467 * 0.27583 * 12 11 10
28 28 C 1.36231 * 120.11858 * 359.47892 * 27 12 11
29 29 H 0.97004 * 120.00281 * 359.97438 * 1 2 3
30 30 H 1.07995 * 120.06091 * 0.02562 * 10 9 7
31 31 H 1.08005 * 119.93872 * 180.02562 * 11 10 9
32 32 H 1.07997 * 126.99956 * 0.22116 * 14 13 12
33 33 H 1.09007 * 109.47059 * 244.99812 * 16 15 14
34 34 H 1.09006 * 109.47164 * 4.99387 * 16 15 14
35 35 H 1.09007 * 109.46931 * 300.00084 * 17 16 15
36 36 H 1.08997 * 109.47302 * 59.99877 * 17 16 15
37 37 H 1.08998 * 109.47339 * 299.99807 * 18 17 16
38 38 H 1.09004 * 109.47606 * 60.00360 * 18 17 16
39 39 H 1.08995 * 109.47534 * 300.00201 * 19 18 17
40 40 H 1.09008 * 109.46660 * 60.00189 * 19 18 17
41 41 H 1.00901 * 110.99848 * 56.05027 * 20 19 18
42 42 H 1.08999 * 109.46704 * 300.00127 * 21 20 19
43 43 H 1.08992 * 109.47346 * 60.00305 * 21 20 19
44 44 H 1.08999 * 109.47202 * 299.99451 * 22 21 20
45 45 H 1.09001 * 109.47400 * 59.99762 * 22 21 20
46 46 H 1.08995 * 109.47376 * 300.00355 * 23 22 21
47 47 H 1.09003 * 109.46699 * 60.00105 * 23 22 21
48 48 H 1.00903 * 110.99796 * 56.05287 * 24 23 22
49 49 H 1.00901 * 110.99615 * 179.97438 * 24 23 22
50 50 H 1.08007 * 119.94431 * 179.74996 * 27 12 11
51 51 H 1.07994 * 120.06000 * 180.25498 * 28 27 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6178 0.0000
4 1 3.7023 1.3465 0.0006
5 1 1.8835 2.3965 -1.2125
6 1 1.8836 2.3964 1.2125
7 6 2.0081 -1.2120 0.0005
8 1 3.0486 -1.2347 0.2893
9 6 1.3548 -2.4035 -0.3760
10 6 0.2273 -2.3554 -1.2205
11 6 -0.4005 -3.5094 -1.5807
12 6 0.0724 -4.7413 -1.1143
13 6 -0.6132 -5.9917 -1.5094
14 6 -0.2772 -7.2667 -1.1404
15 7 -1.1789 -8.0768 -1.7368
16 6 -1.2180 -9.5373 -1.6307
17 6 -2.5996 -9.9764 -1.1415
18 6 -2.6405 -11.5019 -1.0313
19 6 -4.0220 -11.9409 -0.5415
20 7 -4.0615 -13.4055 -0.4362
21 6 -5.3762 -13.8644 0.0319
22 6 -5.3784 -15.3913 0.1292
23 6 -6.7475 -15.8692 0.6174
24 7 -6.7499 -17.3353 0.7103
25 7 -1.9974 -7.3509 -2.4135
26 7 -1.6945 -6.1058 -2.3040
27 6 1.1884 -4.7944 -0.2713
28 6 1.8266 -3.6467 0.0910
29 1 -0.4851 0.8401 0.0004
30 1 -0.1381 -1.4053 -1.5813
31 1 -1.2642 -3.4737 -2.2282
32 1 0.5396 -7.5639 -0.4995
33 1 -1.0217 -9.9781 -2.6081
34 1 -0.4590 -9.8707 -0.9228
35 1 -2.7959 -9.5357 -0.1640
36 1 -3.3585 -9.6432 -1.8493
37 1 -2.4444 -11.9422 -2.0088
38 1 -1.8816 -11.8356 -0.3235
39 1 -4.2177 -11.5006 0.4362
40 1 -4.7812 -11.6072 -1.2489
41 1 -3.3249 -13.7449 0.1641
42 1 -5.5815 -13.4377 1.0136
43 1 -6.1446 -13.5438 -0.6715
44 1 -5.1730 -15.8183 -0.8524
45 1 -4.6101 -15.7117 0.8329
46 1 -6.9527 -15.4422 1.5990
47 1 -7.5161 -15.5488 -0.0860
48 1 -6.0040 -17.6610 1.3067
49 1 -7.6438 -17.6758 1.0312
50 1 1.5469 -5.7474 0.0891
51 1 2.6901 -3.6892 0.7383
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001254163805.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:42
Heat of formation + Delta-G solvation = 90.227076 kcal
Electronic energy + Delta-G solvation = -27090.564801 eV
Core-core repulsion = 23218.379363 eV
Total energy + Delta-G solvation = -3872.185438 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.207 amu
Computer time = 1.36 seconds
Orbital eigenvalues (eV)
-42.59046 -37.95800 -37.55417 -36.39421 -35.11940 -33.94372 -32.87506 -31.28620
-30.54210 -29.59372 -28.81077 -27.77007 -25.39674 -24.65452 -23.11706 -22.33095
-22.13800 -21.50735 -21.22267 -20.24389 -19.69403 -17.42328 -17.10465 -16.86077
-16.44993 -16.24463 -15.71087 -15.39696 -15.30891 -14.92385 -14.71735 -14.58722
-14.32635 -13.85168 -13.80656 -13.23862 -13.11452 -12.93868 -12.66838 -12.37777
-12.25399 -12.06991 -11.89660 -11.82083 -11.74482 -11.51336 -11.47387 -11.33046
-11.17910 -11.12813 -11.00352 -10.77930 -10.61019 -10.32095 -9.75744 -9.68265
-9.40723 -9.30407 -9.28936 -8.94159 -8.81518 -7.56818 -7.14050 -6.86350
-4.40951 1.94396 2.45107 2.64318 2.95844 3.03018 3.08251 3.12948
3.51448 3.68944 3.85316 4.06236 4.27503 4.39600 4.45615 4.62806
4.63659 4.68347 4.77561 4.82550 4.88748 4.96671 5.01387 5.09633
5.12724 5.17272 5.22563 5.36173 5.50634 5.56930 5.62505 5.69476
5.72206 5.77659 5.79834 5.89062 6.10923 6.19500 6.44878 6.47125
6.54588 6.77100 6.80873 6.87302 6.95775 6.97528 7.02034 7.21126
7.30435 7.58004 7.83965 7.98380 8.09707 8.20341 8.55831 8.77845
8.89522 9.09247 10.04815
Molecular weight = 343.21amu
Principal moments of inertia in cm(-1)
A = 0.032152 B = 0.001230 C = 0.001224
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 870.648332 B =22749.538559 C =22878.436449
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.778 5.778
2 C 0.075 3.925
3 Si 0.909 3.091
4 H -0.259 1.259
5 H -0.270 1.270
6 H -0.273 1.273
7 C -0.450 4.450
8 H 0.082 0.918
9 C 0.120 3.880
10 C -0.174 4.174
11 C -0.060 4.060
12 C -0.168 4.168
13 C 0.084 3.916
14 C -0.091 4.091
15 N -0.296 5.296
16 C 0.122 3.878
17 C -0.131 4.131
18 C -0.113 4.113
19 C 0.058 3.942
20 N -0.691 5.691
21 C 0.059 3.941
22 C -0.117 4.117
23 C 0.061 3.939
24 N -0.853 5.853
25 N -0.101 5.101
26 N -0.279 5.279
27 C -0.060 4.060
28 C -0.231 4.231
29 H 0.284 0.716
30 H 0.119 0.881
31 H 0.097 0.903
32 H 0.181 0.819
33 H 0.094 0.906
34 H 0.100 0.900
35 H 0.070 0.930
36 H 0.083 0.917
37 H 0.077 0.923
38 H 0.064 0.936
39 H 0.031 0.969
40 H 0.075 0.925
41 H 0.340 0.660
42 H 0.028 0.972
43 H 0.074 0.926
44 H 0.080 0.920
45 H 0.058 0.942
46 H 0.025 0.975
47 H 0.073 0.927
48 H 0.340 0.660
49 H 0.343 0.657
50 H 0.088 0.912
51 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.421 -25.862 2.956 27.068
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.402 5.402
2 C -0.145 4.145
3 Si 0.733 3.267
4 H -0.182 1.182
5 H -0.195 1.195
6 H -0.199 1.199
7 C -0.478 4.478
8 H 0.100 0.900
9 C 0.117 3.883
10 C -0.193 4.193
11 C -0.079 4.079
12 C -0.172 4.172
13 C -0.051 4.051
14 C -0.239 4.239
15 N -0.092 5.092
16 C 0.000 4.000
17 C -0.170 4.170
18 C -0.152 4.152
19 C -0.071 4.071
20 N -0.321 5.321
21 C -0.071 4.071
22 C -0.155 4.155
23 C -0.070 4.070
24 N -0.382 5.382
25 N -0.079 5.079
26 N -0.146 5.146
27 C -0.080 4.080
28 C -0.250 4.250
29 H 0.095 0.905
30 H 0.137 0.863
31 H 0.116 0.884
32 H 0.199 0.801
33 H 0.112 0.888
34 H 0.118 0.882
35 H 0.089 0.911
36 H 0.102 0.898
37 H 0.096 0.904
38 H 0.083 0.917
39 H 0.049 0.951
40 H 0.094 0.906
41 H 0.157 0.843
42 H 0.046 0.954
43 H 0.093 0.907
44 H 0.099 0.901
45 H 0.077 0.923
46 H 0.043 0.957
47 H 0.092 0.908
48 H 0.153 0.847
49 H 0.155 0.845
50 H 0.107 0.893
51 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -8.916 -25.809 0.581 27.312
hybrid contribution 1.115 0.999 2.864 3.232
sum -7.801 -24.810 3.445 26.235
Atomic orbital electron populations
1.69847 1.07736 1.29605 1.33044 1.26007 0.94753 1.01632 0.92134
0.86238 0.81042 0.80654 0.78734 1.18219 1.19499 1.19853 1.19697
0.98342 0.91353 1.38423 0.90026 1.17734 0.90756 0.92075 0.87754
1.21000 0.99722 0.96994 1.01608 1.20491 0.97780 0.91853 0.97772
1.17069 1.01195 0.88441 1.10447 1.20770 0.94039 0.93346 0.96940
1.23367 1.01307 0.90698 1.08570 1.46973 1.20639 1.08471 1.33072
1.21949 0.99868 0.74291 1.03861 1.21824 0.96344 0.95885 1.02977
1.21465 0.96855 0.94075 1.02770 1.21954 0.98043 0.87160 0.99907
1.60438 1.04959 1.10445 1.56295 1.21912 0.91821 0.94945 0.98392
1.21542 0.96415 0.94619 1.02921 1.21754 0.98115 0.87898 0.99272
1.58698 1.09258 1.09908 1.60332 1.78018 1.15964 0.97905 1.16027
1.75311 1.14017 1.07471 1.17811 1.20183 0.94584 0.96643 0.96584
1.20603 1.04191 0.92771 1.07456 0.90536 0.86314 0.88446 0.80144
0.88770 0.88176 0.91101 0.89807 0.90386 0.91683 0.95072 0.90605
0.84256 0.95361 0.90743 0.90084 0.92294 0.95673 0.90831 0.84750
0.84517 0.89350 0.88671
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -19.68 10.96 55.55 0.61 -19.07 16
2 C 0.07 1.82 5.13 -17.34 -0.09 1.73 16
3 Si 0.91 18.00 29.60 -169.99 -5.03 12.97 16
4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16
5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16
6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16
7 C -0.45 -11.54 9.03 -37.89 -0.34 -11.88 16
8 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16
9 C 0.12 3.13 5.57 -106.80 -0.60 2.54 16
10 C -0.17 -4.55 8.63 -39.28 -0.34 -4.89 16
11 C -0.06 -1.48 9.64 -39.66 -0.38 -1.86 16
12 C -0.17 -3.89 5.90 -104.62 -0.62 -4.51 16
13 C 0.08 1.77 6.98 -83.11 -0.58 1.19 16
14 C -0.09 -1.51 10.96 -16.60 -0.18 -1.69 16
15 N -0.30 -4.44 3.43 -60.91 -0.21 -4.65 16
16 C 0.12 1.12 6.44 -4.05 -0.03 1.09 16
17 C -0.13 -1.09 5.34 -26.74 -0.14 -1.23 16
18 C -0.11 -0.69 5.47 -26.73 -0.15 -0.83 16
19 C 0.06 0.39 5.69 -3.83 -0.02 0.37 16
20 N -0.69 -4.38 6.50 -113.78 -0.74 -5.12 16
21 C 0.06 0.34 5.69 -3.82 -0.02 0.32 16
22 C -0.12 -0.62 5.74 -26.73 -0.15 -0.77 16
23 C 0.06 0.30 6.79 -3.82 -0.03 0.27 16
24 N -0.85 -4.05 9.62 -10.37 -0.10 -4.15 16
25 N -0.10 -1.88 12.87 60.35 0.78 -1.10 16
26 N -0.28 -6.07 12.15 33.06 0.40 -5.66 16
27 C -0.06 -1.32 9.51 -39.66 -0.38 -1.70 16
28 C -0.23 -5.48 9.73 -39.28 -0.38 -5.86 16
29 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16
30 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16
31 H 0.10 2.35 7.88 -52.48 -0.41 1.94 16
32 H 0.18 2.37 7.39 -52.49 -0.39 1.98 16
33 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16
34 H 0.10 0.66 8.06 -51.93 -0.42 0.24 16
35 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16
36 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16
37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
39 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16
40 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16
41 H 0.34 1.80 8.73 -39.29 -0.34 1.46 16
42 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16
43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
45 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16
46 H 0.03 0.11 8.14 -51.93 -0.42 -0.31 16
47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
48 H 0.34 1.23 8.99 -39.29 -0.35 0.88 16
49 H 0.34 1.14 9.08 -39.29 -0.36 0.78 16
50 H 0.09 1.62 7.09 -52.48 -0.37 1.24 16
51 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16
LS Contribution 422.15 15.07 6.36 6.36
Total: -1.00 -30.75 422.15 -10.79 -41.54
By element:
Atomic # 1 Polarization: 15.03 SS G_CDS: -8.44 Total: 6.60 kcal
Atomic # 6 Polarization: -23.29 SS G_CDS: -4.42 Total: -27.72 kcal
Atomic # 7 Polarization: -40.49 SS G_CDS: 0.74 Total: -39.76 kcal
Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal
Total LS contribution 6.36 Total: 6.36 kcal
Total: -30.75 -10.79 -41.54 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001254163805.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.768 kcal
(2) G-P(sol) polarization free energy of solvation -30.751 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.017 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) 90.227 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.37 seconds