Wall clock time and date at job start Sat Apr 11 2020 07:02:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30833 * 1
3 3 Si 1.86801 * 119.99975 * 2 1
4 4 H 1.48498 * 109.47402 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47255 * 300.00306 * 3 2 1
6 6 H 1.48502 * 109.46995 * 60.00015 * 3 2 1
7 7 C 1.39952 * 120.00147 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00070 * 197.98008 * 7 2 1
9 9 C 1.41007 * 119.99849 * 17.98427 * 7 2 1
10 10 C 1.40945 * 120.11702 * 24.68971 * 9 7 2
11 11 C 1.36229 * 119.87815 * 180.02562 * 10 9 7
12 12 C 1.39953 * 120.12163 * 359.97438 * 11 10 9
13 13 C 1.47975 * 119.88603 * 180.02562 * 12 11 10
14 14 C 1.36910 * 126.95910 * 180.02562 * 13 12 11
15 15 N 1.35090 * 106.00260 * 179.97438 * 14 13 12
16 16 C 1.46494 * 125.71303 * 179.97438 * 15 14 13
17 17 C 1.52996 * 109.47577 * 124.99806 * 16 15 14
18 18 C 1.52995 * 109.47325 * 179.97438 * 17 16 15
19 19 C 1.53002 * 109.47202 * 179.97438 * 18 17 16
20 20 N 1.46894 * 109.47211 * 179.97438 * 19 18 17
21 21 C 1.46907 * 111.00041 * 180.02562 * 20 19 18
22 22 C 1.53001 * 109.46981 * 180.02562 * 21 20 19
23 23 C 1.53005 * 109.47026 * 179.97438 * 22 21 20
24 24 N 1.46899 * 109.47081 * 179.97438 * 23 22 21
25 25 N 1.28635 * 108.57481 * 359.97438 * 15 14 13
26 26 N 1.28607 * 110.58841 * 0.02562 * 25 15 14
27 27 C 1.39959 * 120.23467 * 0.27583 * 12 11 10
28 28 C 1.36231 * 120.11858 * 359.47892 * 27 12 11
29 29 H 0.97004 * 120.00281 * 359.97438 * 1 2 3
30 30 H 1.07995 * 120.06091 * 0.02562 * 10 9 7
31 31 H 1.08005 * 119.93872 * 180.02562 * 11 10 9
32 32 H 1.07997 * 126.99956 * 0.22116 * 14 13 12
33 33 H 1.09007 * 109.47059 * 244.99812 * 16 15 14
34 34 H 1.09006 * 109.47164 * 4.99387 * 16 15 14
35 35 H 1.09007 * 109.46931 * 300.00084 * 17 16 15
36 36 H 1.08997 * 109.47302 * 59.99877 * 17 16 15
37 37 H 1.08998 * 109.47339 * 299.99807 * 18 17 16
38 38 H 1.09004 * 109.47606 * 60.00360 * 18 17 16
39 39 H 1.08995 * 109.47534 * 300.00201 * 19 18 17
40 40 H 1.09008 * 109.46660 * 60.00189 * 19 18 17
41 41 H 1.00901 * 110.99848 * 56.05027 * 20 19 18
42 42 H 1.08999 * 109.46704 * 300.00127 * 21 20 19
43 43 H 1.08992 * 109.47346 * 60.00305 * 21 20 19
44 44 H 1.08999 * 109.47202 * 299.99451 * 22 21 20
45 45 H 1.09001 * 109.47400 * 59.99762 * 22 21 20
46 46 H 1.08995 * 109.47376 * 300.00355 * 23 22 21
47 47 H 1.09003 * 109.46699 * 60.00105 * 23 22 21
48 48 H 1.00903 * 110.99796 * 56.05287 * 24 23 22
49 49 H 1.00901 * 110.99615 * 179.97438 * 24 23 22
50 50 H 1.08007 * 119.94431 * 179.74996 * 27 12 11
51 51 H 1.07994 * 120.06000 * 180.25498 * 28 27 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6178 0.0000
4 1 3.7023 1.3465 0.0006
5 1 1.8835 2.3965 -1.2125
6 1 1.8836 2.3964 1.2125
7 6 2.0081 -1.2120 0.0005
8 1 3.0486 -1.2347 0.2893
9 6 1.3548 -2.4035 -0.3760
10 6 0.2273 -2.3554 -1.2205
11 6 -0.4005 -3.5094 -1.5807
12 6 0.0724 -4.7413 -1.1143
13 6 -0.6132 -5.9917 -1.5094
14 6 -0.2772 -7.2667 -1.1404
15 7 -1.1789 -8.0768 -1.7368
16 6 -1.2180 -9.5373 -1.6307
17 6 -2.5996 -9.9764 -1.1415
18 6 -2.6405 -11.5019 -1.0313
19 6 -4.0220 -11.9409 -0.5415
20 7 -4.0615 -13.4055 -0.4362
21 6 -5.3762 -13.8644 0.0319
22 6 -5.3784 -15.3913 0.1292
23 6 -6.7475 -15.8692 0.6174
24 7 -6.7499 -17.3353 0.7103
25 7 -1.9974 -7.3509 -2.4135
26 7 -1.6945 -6.1058 -2.3040
27 6 1.1884 -4.7944 -0.2713
28 6 1.8266 -3.6467 0.0910
29 1 -0.4851 0.8401 0.0004
30 1 -0.1381 -1.4053 -1.5813
31 1 -1.2642 -3.4737 -2.2282
32 1 0.5396 -7.5639 -0.4995
33 1 -1.0217 -9.9781 -2.6081
34 1 -0.4590 -9.8707 -0.9228
35 1 -2.7959 -9.5357 -0.1640
36 1 -3.3585 -9.6432 -1.8493
37 1 -2.4444 -11.9422 -2.0088
38 1 -1.8816 -11.8356 -0.3235
39 1 -4.2177 -11.5006 0.4362
40 1 -4.7812 -11.6072 -1.2489
41 1 -3.3249 -13.7449 0.1641
42 1 -5.5815 -13.4377 1.0136
43 1 -6.1446 -13.5438 -0.6715
44 1 -5.1730 -15.8183 -0.8524
45 1 -4.6101 -15.7117 0.8329
46 1 -6.9527 -15.4422 1.5990
47 1 -7.5161 -15.5488 -0.0860
48 1 -6.0040 -17.6610 1.3067
49 1 -7.6438 -17.6758 1.0312
50 1 1.5469 -5.7474 0.0891
51 1 2.6901 -3.6892 0.7383
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001254163805.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:41
Heat of formation + Delta-G solvation = 69.692047 kcal
Electronic energy + Delta-G solvation = -27091.455266 eV
Core-core repulsion = 23218.379363 eV
Total energy + Delta-G solvation = -3873.075903 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.207 amu
Computer time = 1.41 seconds
Orbital eigenvalues (eV)
-43.97832 -39.39035 -38.45429 -37.07383 -35.94155 -35.57061 -33.77753 -32.90024
-31.52459 -31.08083 -30.46874 -28.52381 -27.16216 -25.36349 -23.91356 -23.81000
-22.98981 -22.57733 -21.93692 -21.79466 -21.15050 -19.25495 -18.33090 -17.43531
-17.26191 -17.18220 -16.86047 -16.48909 -16.12770 -15.90309 -15.83236 -15.51815
-15.30949 -15.12298 -14.87362 -14.42666 -14.36401 -13.89610 -13.87410 -13.70840
-13.45060 -13.26666 -12.92910 -12.85485 -12.78193 -12.69871 -12.50678 -12.35321
-12.30930 -12.16863 -12.00536 -11.85026 -11.75992 -11.55199 -11.52053 -11.21125
-11.17869 -10.87278 -10.42343 -9.65662 -9.44509 -9.42946 -8.93013 -8.65863
-6.31273 0.47983 0.87319 1.22958 1.38652 1.42463 1.55840 1.58412
2.01061 2.20442 2.82691 3.03046 3.49420 3.64332 3.72284 3.80189
3.83089 3.96816 4.06113 4.15801 4.19486 4.29311 4.34478 4.36770
4.38745 4.46565 4.50261 4.54569 4.55923 4.59549 4.71068 4.75419
4.75802 4.85294 4.95782 5.04577 5.14736 5.19869 5.20660 5.24390
5.29230 5.34211 5.36763 5.42948 5.71799 5.83215 6.00000 6.00601
6.10531 6.20567 6.23792 6.32794 6.44426 6.55604 6.67299 6.89539
7.01742 7.65797 8.28095
Molecular weight = 343.21amu
Principal moments of inertia in cm(-1)
A = 0.032152 B = 0.001230 C = 0.001224
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 870.648332 B =22749.538559 C =22878.436449
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.818 5.818
2 C 0.034 3.966
3 Si 0.984 3.016
4 H -0.252 1.252
5 H -0.267 1.267
6 H -0.265 1.265
7 C -0.485 4.485
8 H 0.086 0.914
9 C 0.088 3.912
10 C -0.195 4.195
11 C -0.077 4.077
12 C -0.162 4.162
13 C 0.039 3.961
14 C -0.054 4.054
15 N -0.279 5.279
16 C 0.109 3.891
17 C -0.124 4.124
18 C -0.100 4.100
19 C 0.059 3.941
20 N -0.695 5.695
21 C 0.061 3.939
22 C -0.107 4.107
23 C 0.062 3.938
24 N -0.863 5.863
25 N -0.116 5.116
26 N -0.322 5.322
27 C -0.055 4.055
28 C -0.239 4.239
29 H 0.290 0.710
30 H 0.098 0.902
31 H 0.088 0.912
32 H 0.227 0.773
33 H 0.113 0.887
34 H 0.141 0.859
35 H 0.062 0.938
36 H 0.062 0.938
37 H 0.080 0.920
38 H 0.085 0.915
39 H 0.029 0.971
40 H 0.063 0.937
41 H 0.348 0.652
42 H 0.031 0.969
43 H 0.066 0.934
44 H 0.065 0.935
45 H 0.065 0.935
46 H 0.031 0.969
47 H 0.068 0.932
48 H 0.347 0.653
49 H 0.350 0.650
50 H 0.136 0.864
51 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.794 -28.787 4.178 29.660
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.443 5.443
2 C -0.183 4.183
3 Si 0.804 3.196
4 H -0.176 1.176
5 H -0.192 1.192
6 H -0.189 1.189
7 C -0.514 4.514
8 H 0.104 0.896
9 C 0.085 3.915
10 C -0.215 4.215
11 C -0.097 4.097
12 C -0.166 4.166
13 C -0.098 4.098
14 C -0.204 4.204
15 N -0.074 5.074
16 C -0.010 4.010
17 C -0.163 4.163
18 C -0.139 4.139
19 C -0.070 4.070
20 N -0.327 5.327
21 C -0.069 4.069
22 C -0.146 4.146
23 C -0.069 4.069
24 N -0.394 5.394
25 N -0.095 5.095
26 N -0.188 5.188
27 C -0.075 4.075
28 C -0.258 4.258
29 H 0.101 0.899
30 H 0.116 0.884
31 H 0.106 0.894
32 H 0.244 0.756
33 H 0.131 0.869
34 H 0.159 0.841
35 H 0.081 0.919
36 H 0.081 0.919
37 H 0.099 0.901
38 H 0.104 0.896
39 H 0.047 0.953
40 H 0.081 0.919
41 H 0.166 0.834
42 H 0.049 0.951
43 H 0.084 0.916
44 H 0.084 0.916
45 H 0.084 0.916
46 H 0.049 0.951
47 H 0.086 0.914
48 H 0.160 0.840
49 H 0.163 0.837
50 H 0.154 0.846
51 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges -7.315 -28.789 1.794 29.758
hybrid contribution 0.491 1.557 2.451 2.945
sum -6.824 -27.232 4.244 28.393
Atomic orbital electron populations
1.69911 1.09349 1.30843 1.34187 1.26883 0.95405 1.04918 0.91047
0.85127 0.79671 0.75876 0.78891 1.17560 1.19183 1.18939 1.19954
0.98753 0.92358 1.40325 0.89627 1.18077 0.91227 0.93682 0.88490
1.20906 1.00943 0.96630 1.03007 1.20560 0.97882 0.92793 0.98424
1.17351 1.01171 0.88725 1.09321 1.20750 0.95305 0.94325 0.99418
1.23911 1.01006 0.89054 1.06444 1.47491 1.18810 1.10418 1.30652
1.22579 1.01448 0.70695 1.06293 1.21732 0.95380 0.97396 1.01785
1.21353 0.96932 0.92117 1.03474 1.21910 0.98218 0.87432 0.99479
1.60420 1.05398 1.10156 1.56728 1.21883 0.91499 0.95258 0.98231
1.21435 0.96865 0.94078 1.02187 1.21718 0.97693 0.88144 0.99394
1.58698 1.10057 1.09791 1.60821 1.77942 1.17031 0.97316 1.17206
1.75259 1.15149 1.09293 1.19127 1.20549 0.93432 0.98074 0.95402
1.20885 1.04827 0.92583 1.07524 0.89933 0.88381 0.89358 0.75630
0.86917 0.84084 0.91934 0.91943 0.90108 0.89624 0.95308 0.91881
0.83371 0.95103 0.91553 0.91616 0.91602 0.95092 0.91388 0.84049
0.83704 0.84607 0.86954
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -43.24 10.96 21.83 0.24 -43.00 16
2 C 0.03 1.68 5.13 85.26 0.44 2.12 16
3 Si 0.98 37.55 29.60 68.60 2.03 39.58 16
4 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16
5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16
6 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16
7 C -0.49 -25.68 9.03 23.36 0.21 -25.47 16
8 H 0.09 4.27 7.91 -2.91 -0.02 4.25 16
9 C 0.09 4.75 5.57 -21.28 -0.12 4.63 16
10 C -0.20 -10.79 8.63 22.46 0.19 -10.60 16
11 C -0.08 -4.01 9.64 22.22 0.21 -3.79 16
12 C -0.16 -7.47 5.90 -19.86 -0.12 -7.59 16
13 C 0.04 1.57 6.98 40.98 0.29 1.86 16
14 C -0.05 -1.56 10.96 83.88 0.92 -0.64 16
15 N -0.28 -7.43 3.43 -346.61 -1.19 -8.62 16
16 C 0.11 1.51 6.44 86.38 0.56 2.07 16
17 C -0.12 -1.71 5.34 30.59 0.16 -1.55 16
18 C -0.10 -0.90 5.47 30.59 0.17 -0.73 16
19 C 0.06 0.68 5.69 86.31 0.49 1.17 16
20 N -0.70 -7.54 6.50 -513.89 -3.34 -10.88 16
21 C 0.06 0.64 5.69 86.30 0.49 1.13 16
22 C -0.11 -1.01 5.74 30.60 0.18 -0.83 16
23 C 0.06 0.54 6.79 86.30 0.59 1.13 16
24 N -0.86 -7.24 9.62 -186.71 -1.80 -9.04 16
25 N -0.12 -4.21 12.87 37.02 0.48 -3.73 16
26 N -0.32 -14.03 12.15 -49.33 -0.60 -14.63 16
27 C -0.06 -2.32 9.51 22.22 0.21 -2.11 16
28 C -0.24 -11.22 9.73 22.46 0.22 -11.00 16
29 H 0.29 13.81 8.30 -92.70 -0.77 13.04 16
30 H 0.10 5.68 6.16 -2.91 -0.02 5.67 16
31 H 0.09 4.58 7.88 -2.91 -0.02 4.56 16
32 H 0.23 4.36 7.39 -2.91 -0.02 4.33 16
33 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16
34 H 0.14 0.92 8.06 -2.38 -0.02 0.90 16
35 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16
36 H 0.06 1.15 8.11 -2.39 -0.02 1.13 16
37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
38 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16
39 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16
40 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16
41 H 0.35 2.81 8.73 -89.69 -0.78 2.03 16
42 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16
43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16
44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
45 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16
46 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16
47 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
48 H 0.35 2.06 8.99 -89.69 -0.81 1.26 16
49 H 0.35 1.97 9.08 -89.69 -0.81 1.16 16
50 H 0.14 4.29 7.09 -2.91 -0.02 4.27 16
51 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16
Total: -1.00 -71.52 422.15 -0.55 -72.06
By element:
Atomic # 1 Polarization: 29.92 SS G_CDS: -1.45 Total: 28.46 kcal
Atomic # 6 Polarization: -55.29 SS G_CDS: 5.09 Total: -50.20 kcal
Atomic # 7 Polarization: -83.69 SS G_CDS: -6.21 Total: -89.90 kcal
Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal
Total: -71.52 -0.55 -72.06 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001254163805.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.756 kcal
(2) G-P(sol) polarization free energy of solvation -71.516 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.240 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.064 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.692 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.41 seconds